BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494322
Length=1262
Score E
Sequences producing significant alignments: (Bits) Value
AT5G46560.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Inner nuc... 848 0.0
> AT5G46560.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Inner nuclear
membrane protein MAN1 (InterPro:IPR018996); Has 58 Blast
hits to 58 proteins in 29 species: Archae - 0; Bacteria
- 4; Metazoa - 11; Fungi - 15; Plants - 20; Viruses - 0; Other
Eukaryotes - 8 (source: NCBI BLink). | chr5:18888061-18890462
FORWARD LENGTH=1536
Length=1536
Score = 848 bits (459), Expect = 0.0
Identities = 560/609 (92%), Gaps = 5/609 (1%)
Strand=Plus/Plus
Query 1 ATGGATTCGATACCAAGGAAGCGACCCAAATCGGAGACCAGAAC-TCCA-AA-ACGGAAC 57
||||||||||||||| ||||||||||||||||||| |||||||| || || | ||
Sbjct 1 ATGGATTCGATACCACGGAAGCGACCCAAATCGGAAACCAGAACGGGCAGAACCCCTAAA 60
Query 58 CCTAAATCATCTTCTTCTCCGATCAGATCAATGCTCGAGCCACCACAAAGTTTCTTTCCT 117
|| || ||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 61 TCTTCTTCTTCTTCTTCTCCGATCAGATCAATGCTCGAGCCACCACAAAGCTTATTTCCT 120
Query 118 TCCAAGGAAGAGTTCTTCAGACTCTTGAAAGTTTTGCTTGTCGCTTGTGTTGTTGCTTTT 177
||||||| ||||||||||| ||| ||||| ||||||||||||||||||| ||| ||||||
Sbjct 121 TCCAAGGGAGAGTTCTTCACACTATTGAAGGTTTTGCTTGTCGCTTGTGCTGTAGCTTTT 180
Query 178 ACCTGCAATTTCCTCGCTAAGTCTCTGAGCTCAAACCCTACTAAATCTTTCTGCGATAGT 237
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 181 ACCTGCAATTTCCTCTCTAAGTCTCTGAGCTCAAACCCTTCTAAATCTTTCTGCGATAGT 240
Query 238 AACTATGATTCCATCGAGTCAGACTTGGATTTTTGTGAACCTTGTCCAATTAATGGAGAA 297
|||| | || ||||||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct 241 AACTTTAATCCCATCGATTCAGACTTGGATATTTGTGAACCTTGTCCAATTAATGGAGAA 300
Query 298 TGTTGCCAAGGGAAGTTGAAATGTAATCTTGGATACAAAAAGCAAAGAAATTTATGTGTA 357
|||| ||||||||||||| |||||||||||||||||||||| ||||| ||||||||||||
Sbjct 301 TGTTACCAAGGGAAGTTGCAATGTAATCTTGGATACAAAAATCAAAGGAATTTATGTGTA 360
Query 358 GAAGATGGAGAAATCAATGAATCAACCAAGAAATTGGTTGGGTATTTTGAGAGAAAAGTT 417
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 361 GAAGATGGAGAAATCAATGAATCAACTAAGAAATTGGTTGGGTATTTTGAGAGAAAAGTT 420
Query 418 TGTGAAGCATATGCTCATAATGAATGCTATGGCACTGGAGCCATTTGGGTTCCGGAGAAT 477
|||||| ||||||||||||||||||| ||||| || ||| ||||||||||||| || |||
Sbjct 421 TGTGAATCATATGCTCATAATGAATGTTATGGTACGGGAACCATTTGGGTTCCAGAAAAT 480
Query 478 GATGTTTGGGA-AGAACTACGTAGCAACAGTTTCTTGAATAATTTAGACGAGTCTGCTTA 536
||||||| ||| |||||||||||| ||||||||||||| ||| |||||||||||||||||
Sbjct 481 GATGTTT-GGACAGAACTACGTAGTAACAGTTTCTTGAGTAACTTAGACGAGTCTGCTTA 539
Query 537 CAATTTTTTGAAAGGAAAGGCTGTAGAAGGTGTCACCGAGCTACTAGAGAAAAGGACTAA 596
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 540 CAATTTTTTGAAAGGAAAGGCTGTTGAAGGTGTCACCGAGCTACTAGAGAAAAGGACTAA 599
Query 597 TTCTAATGG 605
|||||||||
Sbjct 600 TTCTAATGG 608
Score = 843 bits (456), Expect = 0.0
Identities = 595/661 (90%), Gaps = 14/661 (2%)
Strand=Plus/Plus
Query 605 GCCAGAAGCTACAAACCCTTGACTTGCCGCATGCGTCAATGGCTCTTGAGGCACATCTTA 664
|||| ||| |||||||| ||||| || ||| ||| ||||||| ||||| |||| ||||||
Sbjct 640 GCCAAAAGTTACAAACCTTTGACCTGTCGCTTGCATCAATGGATCTTGCGGCATATCTTA 699
Query 665 ATTATCTCGTCCG-CATGTGCAATGGTATTCTAGTCGGCAGCGCAGTATTGCGTAGGAAA 723
|| ||||||| || | |||||||| | ||||| ||||||||| | |||||||||| |
Sbjct 700 ATCATCTCGT-CGTCCTGTGCAAT-G----CTAGTGGGCAGCGCAATGTTGCGTAGGAGA 753
Query 724 ATTCAACGTAAGCGATATTTTTCAAGAAGAGTGGAAGAGTTATACGACCAGGTCTGTGAC 783
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 754 ATTCAACGTAAGCAATGTTTTTCAAGAAGAGTGGAAGAGTTATACGACCAGGTCTGTGAC 813
Query 784 TTCCTGGAAGAGAATGCAGTGGCATCAAATTCTGCAGACACTAGTAATTGTGAGCCTTGG 843
|||||||||||||||||||||||||||||||||||||| |||||||| || |||||||||
Sbjct 814 TTCCTGGAAGAGAATGCAGTGGCATCAAATTCTGCAGAAACTAGTAACTGCGAGCCTTGG 873
Query 844 GTTATCGCATCTTGGTTACGTGATTATCTACTCTTGCCTAGAGAAAGAAGAGACCCTCTG 903
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 874 GTTATTGCATCTTGGTTACGTGATTATCTACTCTTGCCTAGGGAAAGAAGAGACCCTCTG 933
Query 904 TTATGGACTAAGGTTGAGGAGTTAATAAAGGAGGATTCACGTATAGACCAATGTCCGAAA 963
||||||||||||||||||||||||||||| ||||||||||||||||||| || | |||
Sbjct 934 TTATGGACTAAGGTTGAGGAGTTAATAAAAGAGGATTCACGTATAGACCGATATGAAAAA 993
Query 964 GTCGTTAAGGGTGAACAAAAAGTTGTATATGAATGGCAAGTCGAAGGTTCACTTAGTTTA 1023
|| | || |||||| |||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 994 CTCCTCAAAGGTGAAAAAAAAGTTGTATGGGAATGGCAAGTGGAAGGTTCACTTAGTTTA 1053
Query 1024 TCCAAGTTGAAGAAACAGCGAGAGACGCAGAAGAAAGTTAGAAAAAGTATCGGCTCAAGC 1083
|||||||||||||||||| ||||||||||||||||||| ||||||||||||| |||||||
Sbjct 1054 TCCAAGTTGAAGAAACAGAGAGAGACGCAGAAGAAAGTCAGAAAAAGTATCGACTCAAGC 1113
Query 1084 ACAAGCTTGCAAGAAAATTACAACAGAAGGAT-GCCGAGACAAGTTCTTAGTACATTTAC 1142
|||||||||||||| ||||||||||| | || ||||||||||||||||||||||| |||
Sbjct 1114 ACAAGCTTGCAAGAGTATTACAACAGACGAATTGCCGAGACAAGTTCTTAGTACATGTAC 1173
Query 1143 AAAAGAACCAT-ATAGAAGCTTGTTATGATTCTTCACGTAATTTTAGAAGATCCAAGGAA 1201
| |||||| || ||||||||||| |||||||||||||||||| | |||||||||||||||
Sbjct 1174 AGAAGAAC-ATTATAGAAGCTTGCTATGATTCTTCACGTAATGTCAGAAGATCCAAGGAA 1232
Query 1202 TGAAGCATTGTCGATATT-CCAAGtttttttttttttCTGTTGATGATGATGCTTGAATT 1260
||||||||||||||| || ||| ||||||||||| | |||||||||||||||||||||
Sbjct 1233 TGAAGCATTGTCGATTTTTCCATGTTTTTTTTTTAT---GTTGATGATGATGCTTGAATT 1289
Query 1261 T 1261
|
Sbjct 1290 T 1290
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62047873620
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5