BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg494322 Length=1262 Score E Sequences producing significant alignments: (Bits) Value AT5G46560.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Inner nuc... 848 0.0 > AT5G46560.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Inner nuclear membrane protein MAN1 (InterPro:IPR018996); Has 58 Blast hits to 58 proteins in 29 species: Archae - 0; Bacteria - 4; Metazoa - 11; Fungi - 15; Plants - 20; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). | chr5:18888061-18890462 FORWARD LENGTH=1536 Length=1536 Score = 848 bits (459), Expect = 0.0 Identities = 560/609 (92%), Gaps = 5/609 (1%) Strand=Plus/Plus Query 1 ATGGATTCGATACCAAGGAAGCGACCCAAATCGGAGACCAGAAC-TCCA-AA-ACGGAAC 57 ||||||||||||||| ||||||||||||||||||| |||||||| || || | || Sbjct 1 ATGGATTCGATACCACGGAAGCGACCCAAATCGGAAACCAGAACGGGCAGAACCCCTAAA 60 Query 58 CCTAAATCATCTTCTTCTCCGATCAGATCAATGCTCGAGCCACCACAAAGTTTCTTTCCT 117 || || ||||||||||||||||||||||||||||||||||||||||| || |||||| Sbjct 61 TCTTCTTCTTCTTCTTCTCCGATCAGATCAATGCTCGAGCCACCACAAAGCTTATTTCCT 120 Query 118 TCCAAGGAAGAGTTCTTCAGACTCTTGAAAGTTTTGCTTGTCGCTTGTGTTGTTGCTTTT 177 ||||||| ||||||||||| ||| ||||| ||||||||||||||||||| ||| |||||| Sbjct 121 TCCAAGGGAGAGTTCTTCACACTATTGAAGGTTTTGCTTGTCGCTTGTGCTGTAGCTTTT 180 Query 178 ACCTGCAATTTCCTCGCTAAGTCTCTGAGCTCAAACCCTACTAAATCTTTCTGCGATAGT 237 ||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| Sbjct 181 ACCTGCAATTTCCTCTCTAAGTCTCTGAGCTCAAACCCTTCTAAATCTTTCTGCGATAGT 240 Query 238 AACTATGATTCCATCGAGTCAGACTTGGATTTTTGTGAACCTTGTCCAATTAATGGAGAA 297 |||| | || ||||||| |||||||||||| ||||||||||||||||||||||||||||| Sbjct 241 AACTTTAATCCCATCGATTCAGACTTGGATATTTGTGAACCTTGTCCAATTAATGGAGAA 300 Query 298 TGTTGCCAAGGGAAGTTGAAATGTAATCTTGGATACAAAAAGCAAAGAAATTTATGTGTA 357 |||| ||||||||||||| |||||||||||||||||||||| ||||| |||||||||||| Sbjct 301 TGTTACCAAGGGAAGTTGCAATGTAATCTTGGATACAAAAATCAAAGGAATTTATGTGTA 360 Query 358 GAAGATGGAGAAATCAATGAATCAACCAAGAAATTGGTTGGGTATTTTGAGAGAAAAGTT 417 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 361 GAAGATGGAGAAATCAATGAATCAACTAAGAAATTGGTTGGGTATTTTGAGAGAAAAGTT 420 Query 418 TGTGAAGCATATGCTCATAATGAATGCTATGGCACTGGAGCCATTTGGGTTCCGGAGAAT 477 |||||| ||||||||||||||||||| ||||| || ||| ||||||||||||| || ||| Sbjct 421 TGTGAATCATATGCTCATAATGAATGTTATGGTACGGGAACCATTTGGGTTCCAGAAAAT 480 Query 478 GATGTTTGGGA-AGAACTACGTAGCAACAGTTTCTTGAATAATTTAGACGAGTCTGCTTA 536 ||||||| ||| |||||||||||| ||||||||||||| ||| ||||||||||||||||| Sbjct 481 GATGTTT-GGACAGAACTACGTAGTAACAGTTTCTTGAGTAACTTAGACGAGTCTGCTTA 539 Query 537 CAATTTTTTGAAAGGAAAGGCTGTAGAAGGTGTCACCGAGCTACTAGAGAAAAGGACTAA 596 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 540 CAATTTTTTGAAAGGAAAGGCTGTTGAAGGTGTCACCGAGCTACTAGAGAAAAGGACTAA 599 Query 597 TTCTAATGG 605 ||||||||| Sbjct 600 TTCTAATGG 608 Score = 843 bits (456), Expect = 0.0 Identities = 595/661 (90%), Gaps = 14/661 (2%) Strand=Plus/Plus Query 605 GCCAGAAGCTACAAACCCTTGACTTGCCGCATGCGTCAATGGCTCTTGAGGCACATCTTA 664 |||| ||| |||||||| ||||| || ||| ||| ||||||| ||||| |||| |||||| Sbjct 640 GCCAAAAGTTACAAACCTTTGACCTGTCGCTTGCATCAATGGATCTTGCGGCATATCTTA 699 Query 665 ATTATCTCGTCCG-CATGTGCAATGGTATTCTAGTCGGCAGCGCAGTATTGCGTAGGAAA 723 || ||||||| || | |||||||| | ||||| ||||||||| | |||||||||| | Sbjct 700 ATCATCTCGT-CGTCCTGTGCAAT-G----CTAGTGGGCAGCGCAATGTTGCGTAGGAGA 753 Query 724 ATTCAACGTAAGCGATATTTTTCAAGAAGAGTGGAAGAGTTATACGACCAGGTCTGTGAC 783 ||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| Sbjct 754 ATTCAACGTAAGCAATGTTTTTCAAGAAGAGTGGAAGAGTTATACGACCAGGTCTGTGAC 813 Query 784 TTCCTGGAAGAGAATGCAGTGGCATCAAATTCTGCAGACACTAGTAATTGTGAGCCTTGG 843 |||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||| Sbjct 814 TTCCTGGAAGAGAATGCAGTGGCATCAAATTCTGCAGAAACTAGTAACTGCGAGCCTTGG 873 Query 844 GTTATCGCATCTTGGTTACGTGATTATCTACTCTTGCCTAGAGAAAGAAGAGACCCTCTG 903 ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 874 GTTATTGCATCTTGGTTACGTGATTATCTACTCTTGCCTAGGGAAAGAAGAGACCCTCTG 933 Query 904 TTATGGACTAAGGTTGAGGAGTTAATAAAGGAGGATTCACGTATAGACCAATGTCCGAAA 963 ||||||||||||||||||||||||||||| ||||||||||||||||||| || | ||| Sbjct 934 TTATGGACTAAGGTTGAGGAGTTAATAAAAGAGGATTCACGTATAGACCGATATGAAAAA 993 Query 964 GTCGTTAAGGGTGAACAAAAAGTTGTATATGAATGGCAAGTCGAAGGTTCACTTAGTTTA 1023 || | || |||||| |||||||||||| ||||||||||| |||||||||||||||||| Sbjct 994 CTCCTCAAAGGTGAAAAAAAAGTTGTATGGGAATGGCAAGTGGAAGGTTCACTTAGTTTA 1053 Query 1024 TCCAAGTTGAAGAAACAGCGAGAGACGCAGAAGAAAGTTAGAAAAAGTATCGGCTCAAGC 1083 |||||||||||||||||| ||||||||||||||||||| ||||||||||||| ||||||| Sbjct 1054 TCCAAGTTGAAGAAACAGAGAGAGACGCAGAAGAAAGTCAGAAAAAGTATCGACTCAAGC 1113 Query 1084 ACAAGCTTGCAAGAAAATTACAACAGAAGGAT-GCCGAGACAAGTTCTTAGTACATTTAC 1142 |||||||||||||| ||||||||||| | || ||||||||||||||||||||||| ||| Sbjct 1114 ACAAGCTTGCAAGAGTATTACAACAGACGAATTGCCGAGACAAGTTCTTAGTACATGTAC 1173 Query 1143 AAAAGAACCAT-ATAGAAGCTTGTTATGATTCTTCACGTAATTTTAGAAGATCCAAGGAA 1201 | |||||| || ||||||||||| |||||||||||||||||| | ||||||||||||||| Sbjct 1174 AGAAGAAC-ATTATAGAAGCTTGCTATGATTCTTCACGTAATGTCAGAAGATCCAAGGAA 1232 Query 1202 TGAAGCATTGTCGATATT-CCAAGtttttttttttttCTGTTGATGATGATGCTTGAATT 1260 ||||||||||||||| || ||| ||||||||||| | ||||||||||||||||||||| Sbjct 1233 TGAAGCATTGTCGATTTTTCCATGTTTTTTTTTTAT---GTTGATGATGATGCTTGAATT 1289 Query 1261 T 1261 | Sbjct 1290 T 1290 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 62047873620 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5