BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494326
Length=2094
Score E
Sequences producing significant alignments: (Bits) Value
AT5G46460.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 3236 0.0
AT5G46440.1 | Symbols: | FUNCTIONS IN: molecular_function unkn... 143 7e-33
> AT5G46460.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily
protein | chr5:18840305-18842398 FORWARD LENGTH=2094
Length=2094
Score = 3236 bits (1752), Expect = 0.0
Identities = 1983/2097 (95%), Gaps = 6/2097 (0%)
Strand=Plus/Plus
Query 1 ATGTGGAGTCGTGCCATTTTTCAACGATTCAGGTTTCGAGCTTTCTCCATGTCTCACGTT 60
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 1 ATGTGGAGTCGTGCCATTTTTCAACGATTCAGGTTTCGAGCTTTCTCTATATCTCACGTT 60
Query 61 ATCCATGGGAAAAGCTT-CAGGAGTTACTCAGTTACTGTGGAGTTTCAGAATCGCGAAGT 119
|||||||||||| | || ||| |||| |||||||||||||||||||||||||||||| ||
Sbjct 61 ATCCATGGGAAATG-TTACAGAAGTTTCTCAGTTACTGTGGAGTTTCAGAATCGCGAGGT 119
Query 120 TTTGATATGTAATCACTTGTTGAATCGAAGACTCGACGAGGCACGAGAGGTTTTCGATCA 179
||||||||||||||||||||||| |||| || |||| ||||| |||||||||||| ||||
Sbjct 120 TTTGATATGTAATCACTTGTTGAGTCGACGAATCGATGAGGCTCGAGAGGTTTTCAATCA 179
Query 180 GGTTCCATCTCCTCATGTGAGTCTTTACACCAAGATGATTTCGGGATACACGAGGAGTAA 239
|||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct 180 GGTTCCATCTCCTCATGTGAGTCTTTACACAAAGATGATTACGGGATACACGAGGAGTAA 239
Query 240 TAGATTGGTTGATGCGTTGAATCTGTTCGACGAAATGCCTTTGAGAGATGTTGTTTCGTG 299
|||||||||||||||||||||||||||||||||||||||| ||||||||||||| || ||
Sbjct 240 TAGATTGGTTGATGCGTTGAATCTGTTCGACGAAATGCCTGTGAGAGATGTTGTATCATG 299
Query 300 GAATTCGATGATCAGTGGTTGTGTGGAGTGTGGTGATATAG-ATACTGCAGTGAAGATGT 358
||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |||
Sbjct 300 GAATTCGATGATCAGTGGTTGTGTGGAGTGTGGTGATAT-GAATACTGCAGTGAAGCTGT 358
Query 359 TCGATGAAATGCCTGAGAGAAGCGTTGTTTCATGGACAGCGATGGTAAATGGGTGTTTTA 418
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 359 TCGATGAAATGCCTGAGAGAAGCGTGGTTTCATGGACAGCGATGGTAAATGGGTGTTTTA 418
Query 419 GGTTTGGTATGGTTGATCAAGCGGAGAGATTGTTTTATCAAATGCTTGTGAAAGATATTG 478
||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 419 GGTCTGGTAAGGTTGATCAAGCGGAGAGATTGTTTTATCAAATGCCTGTGAAAGATACTG 478
Query 479 CAGCCTGGAATGCGATGGTTCATGGGTATTTACAGTTTGGTAAAGTAGACGATGCCTTGA 538
|||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 CAGCGTGGAATTCGATGGTTCATGGGTATTTACAGTTTGGTAAAGTAGACGATGCCTTGA 538
Query 539 AGTTGTTTAAGCAAATGCCCCGGAAGAATGTGATTTCCTGGACGACAATGATCTGCGGAT 598
||||||||||||||||||| |||||||||||||||| ||||||||||||||||| || |
Sbjct 539 AGTTGTTTAAGCAAATGCCTGGGAAGAATGTGATTTCGTGGACGACAATGATCTGTGGGT 598
Query 599 TAGACCAGAATGAGAGGAGTGGAGAAGCTCTCAATTTGTTCAAGAACATGTTGCGTTGTT 658
||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct 599 TAGACCAGAATGAGAGGAGTGGAGAGGCTCTCGATTTGTTCAAGAACATGTTGCGTTGTT 658
Query 659 GCATAAAATCGACTTCAAGAACGTTCACTTGTGTAATCACCGCTTGTGCAAATGCTCCAG 718
|||||||||||||||||||| | |||||||| |||||||||||||| || ||||||||||
Sbjct 659 GCATAAAATCGACTTCAAGACCATTCACTTGCGTAATCACCGCTTGCGCGAATGCTCCAG 718
Query 719 CGTTTCATATGGGTACCCAAGTTCATGGCTTCATCATCAAGTCGGGGTTTTTATATGAAG 778
||||||||||||| | |||||||||||||| |||||||||| |||||||||||||||||
Sbjct 719 CGTTTCATATGGGGATACAAGTTCATGGCTTGATCATCAAGTTGGGGTTTTTATATGAAG 778
Query 779 AATATGTAACTGCTTCGCTCATAACGTTATATGCAAACTGCAAAAGAACAGAGGATTCTC 838
|||||||| |||||||||||||||| || ||||||||||||||||||| || ||||||||
Sbjct 779 AATATGTATCTGCTTCGCTCATAACTTTTTATGCAAACTGCAAAAGAATAGGGGATTCTC 838
Query 839 GTAAGGTGTTTGGCGAGATGGTTCATGAA-AAGGTTGCTGTGTGGACTGCTCTATTGTCT 897
| |||||||||| ||||| |||||||||| || ||||||||||||||||||||||||||
Sbjct 839 GGAAGGTGTTTGACGAGAAGGTTCATGAACAA-GTTGCTGTGTGGACTGCTCTATTGTCA 897
Query 898 GGGTATAGTCTGAATAGAAAGCATGAAGATGCGTTAAATGTTTTCTCCGGGATGTTAAGA 957
|| ||||||||||| | |||||| ||||||||||| | | | ||||||||||||||||||
Sbjct 898 GGTTATAGTCTGAACAAAAAGCACGAAGATGCGTTGAGTATATTCTCCGGGATGTTAAGA 957
Query 958 AACAGTATCTTACCAAATCAATCAACATTTGCTAGCGGATTAAACTCTTGCTCTGCTTTG 1017
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 AACAGTATCTTACCAAATCAATCAACATTTGCTAGCGGATTAAACTCTTGCTCTGCTTTG 1017
Query 1018 GGAACATTGGATTGGGGTAAGGAGATACATGGAGTTGCTGTGAAGCTCGGTTTAGGAACT 1077
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||| ||||
Sbjct 1018 GGAACATTGGATTGGGGTAAGGAGATGCATGGAGTTGCTGTGAAGCTTGGTTTAGAAACT 1077
Query 1078 GATGCCTTTGTGGGTAATTCTCTTGTTGTGATGTACAGCGATTCTGGAAACGTTAACGAT 1137
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1078 GATGCCTTTGTGGGTAATTCTCTTGTTGTGATGTACAGCGATTCTGGAAACGTTAATGAT 1137
Query 1138 GCCGTTTCAGTGTTCATAGAAATCTTCAAGAAGAGCATTGTGTCATGGAATTCCATTATT 1197
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1138 GCCGTTTCAGTGTTCATAAAAATCTTCAAGAAGAGCATTGTGTCATGGAATTCCATTATT 1197
Query 1198 GTTGGCTGCGCACAGCATGGGCGTGGAAAGTGGGCGTTTGTCATATTCGGTCAAATGATT 1257
||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1198 GTTGGCTGCGCGCAGCATGGGCGTGGAAAGTGGGCGTTTGTCATATTTGGTCAAATGATA 1257
Query 1258 CGCCTAAACAAAGAGCCAGATGAGATAACTTTCACTGGCTTGCTCTCTGCTTGTAGCCAT 1317
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 1258 CGCCTAAACAAAGAGCCAGATGAGATCACTTTCACTGGCTTACTCTCTGCTTGTAGCCAT 1317
Query 1318 TGCGGGTTCCTACAGAAAGGAAGAAAGCTGTTCTATTACATGTCAAGCGGACTAAATCAT 1377
|||||||||||| |||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 1318 TGCGGGTTCCTAGAGAAAGGAAGAAAGCTGTTCTATTACATGTCAAGTGGAATAAATCAT 1377
Query 1378 ATCGATAGAAAGATTCAACACTACACTTGTATGGTTGATATCTTGGGAAGATGCGGGGAA 1437
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1378 ATCGATAGAAAGATTCAACACTACACTTGTATGGTTGATATCTTGGGAAGATGCGGAAAA 1437
Query 1438 TTGAAAGAAGCAGAAAAACTTATCGAGAGCATGGTTGTGAAACCTAATGAAATGGTTTGG 1497
||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1438 TTGAAAGAAGCAGAAGAACTTATCGAGAGAATGGTTGTGAAACCTAATGAAATGGTTTGG 1497
Query 1498 TTGGCTTTACTTAGTGCTTGTAGGATGCATTCTGATGTAGATAGAGGCGAGAAAGCTGCT 1557
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1498 TTGGCTTTACTTAGTGCTTGTAGGATGCATTCTGATGTAGACAGAGGCGAGAAAGCTGCT 1557
Query 1558 GCAGCCATTTTTAATCTGGACTCAAAATCAAGCGCTGCTTATGTCTTGTTGTCAAATATA 1617
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1558 GCAGCCATTTTTAATCTGGACTCAAAATCAAGCGCTGCTTATGTCTTATTGTCAAATATA 1617
Query 1618 TATGCTTCTGCTGGTAGATGGTCCAGTGTATCGAAATTGAGAGTTAAGATGAAGCAGAAG 1677
||||||||||||||||||||||| | |||||| ||||||||||||||||||||| ||||
Sbjct 1618 TATGCTTCTGCTGGTAGATGGTCGAATGTATCAAAATTGAGAGTTAAGATGAAGAAGAAT 1677
Query 1678 GGGATTATGAAGAAACCCGGGAGCAGTTGGGTTGTGATTAGAGGGAAAAAGCACGAGTTT 1737
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 1678 GGGATTATGAAGAAACCCGGGAGCAGTTGGGTTGTTATTAGAGGGAAAAAGCACGAATTT 1737
Query 1738 TTCTCCGGTGATCGTCCACATTGCTTGAGAATATTTGAGAAGTTGGAATTTCTGAGAGAG 1797
||||||||||||| |||||||||| ||| |||| |||||||||||| ||||||||||||
Sbjct 1738 TTCTCCGGTGATCAACCACATTGCTCGAGGATATATGAGAAGTTGGAGTTTCTGAGAGAG 1797
Query 1798 AAGTTGAAGGAACTGGGCTATGTTCCTGATTATAGATCTGCTTTACATGATGTTGAAGAT 1857
|||||||||||||||||||||| ||||||||||||||| ||||||||||| |||||||||
Sbjct 1798 AAGTTGAAGGAACTGGGCTATGCTCCTGATTATAGATCCGCTTTACATGACGTTGAAGAT 1857
Query 1858 GAACAGAAAGAAGAGATGTTATGGTATCACAGTGAGAGGCTTGCTATTGCGTTTGGGTTG 1917
|||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||
Sbjct 1858 GAACAGAAAGAAGAGATGTTGTGGTACCACAGTGAGAGGCTTGCTATTGCTTTTGGGTTG 1917
Query 1918 ATTAATACAGTTGAAGGAAGTACAGTGACAGTAATGAAAAATCTACGAGTTTGTGAAGAT 1977
||||||||||||||||||||| |||| ||||| ||||| |||||||| ||||||||||||
Sbjct 1918 ATTAATACAGTTGAAGGAAGTGCAGTCACAGTGATGAAGAATCTACGGGTTTGTGAAGAT 1977
Query 1978 TGTCACACAGTGATTAAGTTAATCTCCAGAGTTGTGGGATGTAAGATTGTTTTAAGGGAT 2037
||||||||||||||||||||||||||| ||||||||||| || |||||||||||||||||
Sbjct 1978 TGTCACACAGTGATTAAGTTAATCTCCGGAGTTGTGGGACGTGAGATTGTTTTAAGGGAT 2037
Query 2038 CCGACTCGGTTTCATCATTTCAAGAATGGGATGTGTTCTTGCGGGGATTATTGGTAG 2094
|||| |||||||||||||||||||||||||| ||||||||| |||||||||||||||
Sbjct 2038 CCGATTCGGTTTCATCATTTCAAGAATGGGACGTGTTCTTGTGGGGATTATTGGTAG 2094
> AT5G46440.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; BEST Arabidopsis thaliana protein match
is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G46460.1);
Has 1807 Blast hits to 1807 proteins in 277
species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347;
Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source:
NCBI BLink). | chr5:18834643-18835153 FORWARD LENGTH=511
Length=511
Score = 143 bits (77), Expect = 7e-33
Identities = 97/107 (91%), Gaps = 0/107 (0%)
Strand=Plus/Plus
Query 181 GTTCCATCTCCTCATGTGAGTCTTTACACCAAGATGATTTCGGGATACACGAGGAGTAAT 240
|||||||||||||| ||||||| ||||||||||||||||| |||||||||||||| ||
Sbjct 112 GTTCCATCTCCTCACGTGAGTCGTTACACCAAGATGATTTGGGGATACACGAGGAACAAA 171
Query 241 AGATTGGTTGATGCGTTGAATCTGTTCGACGAAATGCCTTTGAGAGA 287
| ||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct 172 AAATTAGTTGATGCGTTGAATCTGTTCGACGAAATGCCTGAGAGAGA 218
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 103814727060
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5