BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494329
Length=2022
Score E
Sequences producing significant alignments: (Bits) Value
AT5G46420.1 | Symbols: | 16S rRNA processing protein RimM fami... 3116 0.0
> AT5G46420.1 | Symbols: | 16S rRNA processing protein RimM family
| chr5:18829955-18832953 FORWARD LENGTH=2066
Length=2066
Score = 3116 bits (1687), Expect = 0.0
Identities = 1919/2030 (95%), Gaps = 19/2030 (1%)
Strand=Plus/Plus
Query 1 AAGAGATAATGCTGAGAGCTTCGCTTCTCTGTTCTTCGGCCTCAATCACTTTCACACCAA 60
||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct 37 AAGAGATAATGCTGAGAGCTTCGCTGCTCTGTTCTTCGACCTCAATCACTTTCACACCAA 96
Query 61 TTCAACTATTCAATCCCAATA-TCTCCCCTCATTTCCAAAGCTTCGAAGTATCTCGTCCC 119
||||||||||||||||||||| | |||| || ||||| ||| |||||| ||||||||||
Sbjct 97 TTCAACTATTCAATCCCAATAGT-TCCCATCGTTTCCCAAGATTCGAACTATCTCGTCCT 155
Query 120 GTCTCGGCTTTGTCTCGTACCAAAAATTGTCACTTCAGTCTCGTGAGAGCTCGTGGGAAA 179
||||||||||||||||||||| ||| |||||||| |||||| |||||||||||||||||
Sbjct 156 GTCTCGGCTTTGTCTCGTACC--AAA-TGTCACTTGAGTCTCCTGAGAGCTCGTGGGAAA 212
Query 180 TCCAGCTTCTTCGTTCGTAGCACCGCTACTCAAGAAGCTGTTGAAACCAGTAGTAACAGT 239
||||||||| || ||| |||||||||||| | |||||||||||||| ||||||||||||
Sbjct 213 TCCAGCTTCCTCACTCGCAGCACCGCTACTGATGAAGCTGTTGAAACTAGTAGTAACAGT 272
Query 240 GAATTGGATTTAGTTGAAGTTGGATTCTTGTCTGGTGTTCATGG-CTTACAAGGCGAGAT 298
| ||||||||| ||||| |||||||||||||||||||||||||| ||| |||||||||||
Sbjct 273 GGATTGGATTTGGTTGAGGTTGGATTCTTGTCTGGTGTTCATGGCCTT-CAAGGCGAGAT 331
Query 299 TTGCATAAAACCAAACACTGATTTTCCTGATTTACGTTTCTCCAAGCCTGGTAGAAGATG 358
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 332 TTGCATAAAACCAAACACTGATTTTCCTGATTTACGTTTCTCTAAGCCTGGTAGAAGATG 391
Query 359 GTTAAAACAACAATTGATGGGACAAGATAAGATTGATGAGGTTGAATTAGTTGAAGGAAG 418
|||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||
Sbjct 392 GTTAAAACAACAATTGTTGGGACAAGATAAGATTGATGAGGTTGAATTAGTCGAAGGAAG 451
Query 419 ACCTCATCCTGCGCAGAAGAGTTGGATTCTTAAGTTTCGAGGGTTGGATGATGTTGATCA 478
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 452 ACCTCATCCTGCGCAGAAGAGTTGGATTCTTAAGTTTCGAGGGTTGGACGATGTTGATCA 511
Query 479 GGTGAGACAACTCGTTGGTGCAACTCTGCTTGCTGAGGACGATGATCGTCCTGAGCTTGA 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 512 GGTGAGACAACTCGTTGGTGCAACTCTGCTTGCTGAGGACGATGATCGTCCTGAGCTTGA 571
Query 539 TG-ATGATGAATTTTACTCTCGTGATCTTGTAGGCATGAAAGTTCTTCTCAAGGAGACGG 597
|| | || |||||||||||||| |||||||||||||||| |||||||||||||||||| |
Sbjct 572 TGAAGGA-GAATTTTACTCTCGAGATCTTGTAGGCATGAGAGTTCTTCTCAAGGAGACCG 630
Query 598 GTCAACTTGTTGGAACTGTTGCTAATATTTTCGACAATGGAGGAAATGATCTTCTACACG 657
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 631 GTCAACTTGTTGGAACTGTTGCTAATATTTTCGACAATGGAGGAAATGATCTTCTACATG 690
Query 658 TTTTGCTTGACTCATCCATGGAAGTCTGCAACGGGAGTGCAAAGACCAATCAGCTTGTGT 717
||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |
Sbjct 691 TTTTGCTTGACTCATCCATGGAAGTCTGCAATGGGAATGCAAAGACCAATCAGCTTGTTT 750
Query 718 GGATACCTTTTGTAGACGCAATTGTTCCTGATGTTGATTTAGAAAGAAAAGAGATGTATA 777
|||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 751 GGATACCTTTTGTAGATGCAATTGTTCCTGATGTTGATTTGGAAAGAAAGGAGATGTATA 810
Query 778 TAACTCCCCCGAAGGGACTCCTCGAGGTGAATATGCGAGCAGATGATCGGTCCAAGAAAG 837
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 811 TAACTCCACCGAAGGGACTCCTCGAGGTGAATATGCGAGCAGATGATCGGTCCAAGAAAG 870
Query 838 AAAGGCGGCAGCTTGAATGGAAAGAAAGAAAAAAGCAGCAGAAGCGTCTTATTGCTGCTA 897
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 871 AAAGGCGGCAGCTTGAATGGAAAGAAAGAAAAAAACAGCAGAAGCGCCTTATTGCTGCTA 930
Query 898 AAAAGAAGTTATGTGAATTGGAGCAAAAGCATGTGTTTGATGGATTAAGGTTTGGAGAAA 957
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 931 AAAAGAAGTTATGTGAAATGGAGCAAAAGCATGTGTTTGATGGATTAAGGTTTGGAGAAA 990
Query 958 AGTCTCAAAGGAATTTACTTGCTGATCATATCCTTGATGTAAACTCCACACTGCTTCAGA 1017
||||||||||||||||||||||||||||||||||| | |||||||||||||| |||||||
Sbjct 991 AGTCTCAAAGGAATTTACTTGCTGATCATATCCTTAACGTAAACTCCACACTACTTCAGA 1050
Query 1018 AAGCGTTGCAAAGTATTGACACCTCATCGAAGAGATGGAATGTAATTGAGGAAATCAATG 1077
|||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1051 AAGCTTTGCAAAGTATTGACACCTCATCGAAGAGATGGAATGTAACTGAGGAAATCAATG 1110
Query 1078 -AGCTGAGAGCTAGAGTATCGGAATGTACTCTGAATGTGTCACGAGAATGCCTTAGTTTT 1136
| ||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 1111 CA-CTGAGAGCTAGAGTATCGGAATGTAATCTGAGTGTGTCACGAGAATGCCTTAGTTTT 1169
Query 1137 GATGCAAGCAAAGAGAAAATGGGTGATAACTTCAGTTTCCTTCAACAAGGGCAAAGTCTA 1196
||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct 1170 GATGCAAGCAAAGAGAACATGGGTGATAACTTCAGTTTCCTTCAACAAGGGCAAAATCTG 1229
Query 1197 TTCTCTGAGGGTAAAGTTTCTATTTGTTTGGTTCTCAATGATCACGAGAACGAACAACCA 1256
|||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 1230 TTCTCTGAGGGTAAAGTTTCTATTTGTTTGGTTCTCAATGATCACGAGAATGAAGAACCA 1289
Query 1257 GAAGGTGAGAATGGTGTAGTCTCGTACCTTCATACACTACTTGATGAGGAGCAGAGTTTC 1316
|||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct 1290 GAAGGTGAGAATGGTGTAGTCTCGTACCTTCACGCACTACTTGATGAGGAGCAGAGGTTC 1349
Query 1317 ATAAAGGAAGAAGATCGCGCTTGCGTGCCACTTGTCATAGTTTCCCCTGAACATACCGTT 1376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1350 ATAAAGGAAGAAGATCGCGCTTGCGTGCCACTTGTCATAGTTTCCCCTGAACATACCATT 1409
Query 1377 GAAGCTCTGCAGAAGCTATTTCAGGATAATGATCATTTTGGATTTGAAG-CAGAAAAGAT 1435
||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 1410 GAAGCTCTGCAGAAGCTATTTCAGGATAATGATCATTTTGGATTTGA-GTCAGAAAAGAT 1468
Query 1436 CTGGATTCTCAAAGAAGAAACGCTTCCAGTAGTATGTAGCTCACCAGAGGAACCGAAAAA 1495
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 1469 CTGGATTCTCAAAGAAGAAACGCTTCCAGTAGTTTGCAGCTCACCAGAGGAACCGAAAAA 1528
Query 1496 GCACAAGATTTTGATGAAATCTCCATGGGAGATACTTAAGTCCCCGGTTGGCTCTGGAGG 1555
|||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1529 GCACAAAATTTTGATGAAATCTCCATGGGAGATACTTGAGTCCCCGGTTGGCTCTGGAGG 1588
Query 1556 AGTCTTGAGCATCCTTGCTTCACATGGAATTACAGACTCTCTTTCCAGTCTGGGAATCGA 1615
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |
Sbjct 1589 AGTCTTGAGCATCCTTGCTTCACATGGAACTACAGACTCTCTTTCCACCCTGGGAATCAA 1648
Query 1616 TTATCTTCAGGTACACAGCATTGAAACAAAACCACAACCTTCGCAACATTACATCAATCC 1675
|||||||||||||||||| |||||||||||||||||||| || |||||||||||||||||
Sbjct 1649 TTATCTTCAGGTACACAGTATTGAAACAAAACCACAACCGTCACAACATTACATCAATCC 1708
Query 1676 GATGCTCGTTGGATTT-GCT-AGTGCAAAAGGTGCTGAGATTGGGATCCAGGTGACCAAA 1733
||||| ||||| ||| | | || |||| ||| || |||||||||||||| |||||| ||
Sbjct 1709 CATGCTTGTTGG-TTTCG-TGAGCGCAAGAGGAGCAGAGATTGGGATCCAAGTGACCGAA 1766
Query 1734 GAATCTGTATTCAAGAACTTGGAAATGGCATTCTCAATGAAGTTTTTGAAGAGATTAAAG 1793
||||||| | ||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 1767 GAATCTGAACTCAAGAACTTGGAAATGACATTCTCAATGAAGTTTCTGAAGAGATTAAAG 1826
Query 1794 GGCAAAATCGAGTTTGAAGCTGTTATGAAGATGCACTCACATGTTCAGAAGGTTGAAAAG 1853
|| |||||||||||||||||||| ||||||||| | |||||||||||||| |||||||||
Sbjct 1827 GGAAAAATCGAGTTTGAAGCTGTCATGAAGATGAATTCACATGTTCAGAATGTTGAAAAG 1886
Query 1854 GAGTGGGTTGAGTCCGTACCATCAGAACCGAACTCGTTTGAGTTTCATTCTGATATATGC 1913
|||||||||||||| |||||||||||||| |||||||||||||||| ||||||||| | |
Sbjct 1887 GAGTGGGTTGAGTCAGTACCATCAGAACCAAACTCGTTTGAGTTTCGTTCTGATATTTAC 1946
Query 1914 AGAGTCTTGAGTGAATGTTCTTCATCAGCTAAGATTTGTTTGATGAACATCACAGTTTAG 1973
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 1947 AGAGTCTTGAGTGAATGTTCTTCATCAGCTAAGATTTGTTTGATGAACATTACCGTTTAG 2006
Query 1974 AACATGTATATTTTGCTACTTAGTT-TTTCGTCCTCACATCTAAAAAGCT 2022
||| |||| |||||||||||||||| ||| ||||||||||||||||||||
Sbjct 2007 AACTTGTACATTTTGCTACTTAGTTGTTT-GTCCTCACATCTAAAAAGCT 2055
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 100200287820
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5