BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494331
Length=2522
Score E
Sequences producing significant alignments: (Bits) Value
AT5G46410.2 | Symbols: SSP4 | SCP1-like small phosphatase 4 | c... 3642 0.0
> AT5G46410.2 | Symbols: SSP4 | SCP1-like small phosphatase 4 |
chr5:18825103-18829221 FORWARD LENGTH=2560
Length=2560
Score = 3642 bits (1972), Expect = 0.0
Identities = 2373/2559 (93%), Gaps = 58/2559 (2%)
Strand=Plus/Plus
Query 1 CTCTCTTGACCGTTCGTGGAAGTTATGTgagagaaagaaaaaacccagagagaagagaga 60
|||| ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 1 CTCTATTGACCGTTCGTGGAAGTTGTGTGAGAGAAAGAAAAAGCCCAGAGAGAAGAGAGA 60
Query 61 gagaCCCACAACACAAACACAAAGTAGACGAAGACGACGACGACGAATCAGCTCTCTTC- 119
|||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct 61 GAGACCCACAACACAAACACAAAGTAGACGAAGAAGACGACGACGAAACAGCTCTCTTCT 120
Query 120 TCTTCTCCTCTCCTATCGCAGCATCTTCTGCTGGTTTGGTCTTT--C---A--------- 165
|| |||||||| | || |||||||||||||||||||||||||| | |
Sbjct 121 TC-TCTCCTCT-C--TCTCAGCATCTTCTGCTGGTTTGGTCTTTCACTAAAGTCTCGGTG 176
Query 166 TGCACCTAAATGTGCTTGATCCAAGGTCGTTATAATTCTGTATACAGAGCCAATGCCATA 225
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 177 TGCACCTAAATGTGCTTGATCCAAGGTCGTTATAATTCTGTGTACAGAGCCAATGCCATA 236
Query 226 TATAGAAATGAAGAGCAAGATAAGCAAGGTTCTTGGTGTCTGTAAGAAACATAAAGCAAC 285
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 237 TATAGAAATGAAGAGCAAGATAAGCAAGGTTCTTGGTGTCTGTAAGAAACATAAAGCAAG 296
Query 286 TACAAGAAATTCTTGCTCTTTGTCCAAAATATCAGGGGACTTGGAAAGCATGACAGCAGC 345
|||||||||||||||||||||||||||||||||||| |||||||||||||| || |||||
Sbjct 297 TACAAGAAATTCTTGCTCTTTGTCCAAAATATCAGGAGACTTGGAAAGCATAACCGCAGC 356
Query 346 TATTACTCATGCTTGCGACGGCGATGAGAAACAGCATCCTGTTTCTTCAGGGCTGGATAC 405
||||||| | ||||| ||| ||||||||||||||| ||||||||||||||| |||||||
Sbjct 357 TATTACT-A--CTTGCCACGACGATGAGAAACAGCACCCTGTTTCTTCAGGGTTGGATAC 413
Query 406 TTTTACTCGGGATACTGAAACCAATGAGCCTGCTGAAATGCTTGTTGACGACACTTCTCA 465
|||| ||||||| | |||||| |||||||| ||||||||||||||||| || ||||||||
Sbjct 414 TTTTTCTCGGGAGAGTGAAACTAATGAGCCCGCTGAAATGCTTGTTGAAGATACTTCTCA 473
Query 466 ATCTCAGGGGTTTGCATCTTCAGTCGATGGTTCTGAATCTGTCGAAAAAATGGAAAATGC 525
||||||||||||||| ||| |||||||||||| ||||||||||||| |||||||||||
Sbjct 474 GTCTCAGGGGTTTGCACCTTGGGTCGATGGTTCTCAATCTGTCGAAAATATGGAAAATGC 533
Query 526 TTGCAATTACATGTCGAACTCAGATACAATATTTTCACCTGTTCTGAATGATGAACTGAA 585
||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| |
Sbjct 534 TTGCAATCACATGTCAAACTCAGATACAATATTTTCACCTGTTCTGAATGATGAACTGGA 593
Query 586 TGGAACTGATCGAGTATTTTCAGCAGGAAACTCTGTGCA-CTGGGAAACCCCTAGGTGGG 644
|||||||| |||||||||| |||||||||| |||||| | |||||||||||| |||||||
Sbjct 594 TGGAACTGGTCGAGTATTTACAGCAGGAAATTCTGTG-ATCTGGGAAACCCCCAGGTGGG 652
Query 645 GAGCCGACGAGAGCAGCAACAAGATTTGCTTTGACAACCAAACATGCAACGTTTCTGATT 704
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 653 GAGCCGACGAGAGCAGCAACAAGATTTGCTTTGACAACCAAACGTGCAACGTTTCTGATT 712
Query 705 TCTATATTTCCGACGTTCTTATTGCGAGCTTGCCGTTTGATGAGAGTGGAAACAATGATG 764
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 713 TCTATATTTCTGACGTTCTTATTGCGAGCTTGCCGTTTGATGAGAGTGGAAACAACGATG 772
Query 765 CTTTCACTGAAATAAGCCCCTTGCCTCATTACATCTTTCCTGAACAGTACATGGTACTAC 824
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 773 CGTTCACTGAAATAAGCCCCTTGCCTCATTACATCTTTCCTGAGCAGTACATGGTACTAC 832
Query 825 CTTACTTAAAAGATGGATCAGCCAACACAGATGATATTAAATCAGACGTTGACAAGATTA 884
|||||||| |||||||||||||||||| |||||||||||| ||||| |||||||||||
Sbjct 833 CTTACTTAGAAGATGGATCAGCCAACAAAGATGATATTAAGTCAGATACTGACAAGATTA 892
Query 885 ATCTCGATAACCATGAATTGTTTCTGGCATTCAACCGGACAAGATCGCCCAATATGGAAC 944
|||||||||||||||| |||||||||||||||||||||||||||||| |||| ||||||
Sbjct 893 ATCTCGATAACCATGACTTGTTTCTGGCATTCAACCGGACAAGATCGTACAATGTGGAAC 952
Query 945 CAGAGGATCATGCTGAATCTGAACTAGCTGAAGACTTTGATCCTCAGCTTTTTATAAAAA 1004
|||| |||| ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 953 CAGATGATCGTGCTGAATCTGAAGTAGCTGAAGACTTTGATCCTCAGCTTTTTATAAAAA 1012
Query 1005 ATCAGCCAGAATTGTCGGATGTTGTATCCAATTATTGGCCTCGGGATACCCTAAGAAAGA 1064
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1013 ATCAGCCGGAATTATCGGATGTTGTATCCAATTATTGGCCTCGGGATACCCTAAGAAAGA 1072
Query 1065 AGTCTGTGACCCTTGTCCTTGATTTGGATGAAACTTTGGTCCATTCGACTCTGGAATCGT 1124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1073 AGTCTGTGACCCTTGTCCTTGATTTGGATGAAACTTTGGTCCATTCGACTCTGGAATCGT 1132
Query 1125 GTAATGCTGCAGATTTTTCCTTCAGAGTCTTTTTCAACATGCAAGAAAACACGGTCTATG 1184
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1133 GTAATGTTGCAGATTTTTCCTTCAGAGTCTTTTTCAACATGCAAGAAAACACGGTCTATG 1192
Query 1185 TGAAACAAAGGCCACACCTTTACAGGTTCTTGGAGAGGGTGGTAGAATTGTTTCATGTCG 1244
||| |||||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 1193 TGAGACAAAGGCCACACCTTTACAGGTTCTTGGAGAGGGTGGGAGAGTTGTTTCATGTCG 1252
Query 1245 TCATCTTCACCGCAAGCCACAACATCTATGCTTCGCAACTTCTCGATATATTGGACCCAG 1304
| |||||||| |||||||||| ||||||||| || |||||||| |||||| |||||||||
Sbjct 1253 TTATCTTCACAGCAAGCCACAGCATCTATGCCTCACAACTTCTAGATATACTGGACCCAG 1312
Query 1305 AGGGAAAGTTCATATCACAGCGTTTTTATCGTGATTCATGCATTCTTTTGGATGGAATTT 1364
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1313 ATGGAAAGTTCATATCACAGCGTTTTTATCGCGATTCATGCATTCTTTTGGATGGAATTT 1372
Query 1365 ACACCAAGGATTTAACTGTACTGGGTCTTGATCTGGCCAAAGTGGCTATAATTGACAACT 1424
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1373 ACACCAAGGATTTAACTGTTCTGGGTCTTGATCTGGCCAAAGTGGCTATAATTGACAACT 1432
Query 1425 GTCCGCAGGTGTACAGATTGCAAATAAATAATGGGATCCCTATCAAAAGTTGGTATGATG 1484
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1433 GTCCGCAGGTGTACAGATTGCAAATAAATAATGGGATCCCTATCAAAAGTTGGTACGATG 1492
Query 1485 ATCTAACTGATGATGGTTTGATTTCTATACTACCCTTCTTAGAGACTTTGGCTGTTGCTG 1544
||| |||||||||||| |||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 1493 ATCCAACTGATGATGGGTTGATTACTATACTTCCCTTCTTAGAGACTTTGGCTGTTGCTG 1552
Query 1545 ATGATGTTCGGCCTATCATTGGCAGGAGATTTGGTAACAAGGAATAAGAGCTTCCTTCTC 1604
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1553 ATGATGTTCGGCCTATCATTGGCAGGAGATTTGGTAACAAGGAATAAGAGTTTCCTTCTC 1612
Query 1605 TTTTTCTCTATATACATCGAGTGCAGATTCTGATATCTTTCCTTTTGATTTTAGTCATAA 1664
||||| |||||||||||||||||||||| ||||| ||| |||||| ||||||||| | ||
Sbjct 1613 TTTTTTTCTATATACATCGAGTGCAGATCCTGATTTCTCTCCTTTGGATTTTAGTTACAA 1672
Query 1665 ATTGGCCCTTAATTAGTTCCTCATATCTCTTGTTAGGTCGTTAATTAGGTAACCAAAGAA 1724
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1673 ATTGGCCCTTAATTAGTTCCTCATATCTCTTTTTAGGTCGTTAATTAGGTAACCAAAGAA 1732
Query 1725 TAAGCTCGTTGAGTCTAGTGATAGTAAGTTTCCTTGCTTGCTCGC-TTTTTTAATAGAAG 1783
||||||||||||||||||||| | ||||||||||||||||||| | ||||||||||||||
Sbjct 1733 TAAGCTCGTTGAGTCTAGTGAGAATAAGTTTCCTTGCTTGCTCCCTTTTTTTAATAGAAG 1792
Query 1784 ACCTAGTTGTGGGCTTAAATCTTATGATTTTGTTGGTTCTCCTCTGCCAAGATAGATCCT 1843
||||||||||||||||||||||||||| |||| ||||||| |||||||||||||||||||
Sbjct 1793 ACCTAGTTGTGGGCTTAAATCTTATGACTTTGCTGGTTCTTCTCTGCCAAGATAGATCCT 1852
Query 1844 AGAAAATCTTGCAGTTTGTTACAAATGTACAGTTGGTTAAGCTGAGATAATGGATGTGTA 1903
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1853 AGAAAATCTTGCAGTTTGTTACAAATGTACAGTTGGTTAAGCTGAGATAATGGATGTGTA 1912
Query 1904 CAAATGAGTTACTATTGCGTGAAATCATTTTGGAAGTTAATACCAGCGGCGTTCATG-GT 1962
|||||||||||||||||||||||||||||||||||||||| |||||| || |||||| ||
Sbjct 1913 CAAATGAGTTACTATTGCGTGAAATCATTTTGGAAGTTAACACCAGCTGCATTCATGTGT 1972
Query 1963 CTCTCTATTTGGATTCCTCTTCTACTGTT-AGTTGAGCTTGAAATTCTTACTTGGACTGG 2021
|||||| || | | ||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 1973 CTCTCT-TT-GCACTCCTCTTGTACTGTTTAGTTGAGCTTGAAATTCTTACTTGGACTGG 2030
Query 2022 TAAATCCAGAACGTTTTTACCTGCGTCTATGCCAGTCATATAAATACAGAAATATAATCA 2081
|||||||||||| | |||||||||||| | |||||||||| |||||||||||||||||||
Sbjct 2031 TAAATCCAGAACATATTTACCTGCGTCAACGCCAGTCATAGAAATACAGAAATATAATCA 2090
Query 2082 AATAATGCAGAAGTT-T--A-T-TGAATCTT----CTA-T-C-AGCTTCTATTGTTTATT 2129
||||||||||||||| | | | |||||||| || | | |||||||||||||||||
Sbjct 2091 AATAATGCAGAAGTTGTTGAGTCTGAATCTTGAATCTTCTACCAGCTTCTATTGTTTATT 2150
Query 2130 TTAAAGGTTCTGAGCAAAGTTATCCCACGTTTTCCGTCTCTTGGCTTTGCAAGATTC-AG 2188
|| |||||||||||||||||||| |||||||||||||||||||||| ||||| |||| |
Sbjct 2151 TTTAAGGTTCTGAGCAAAGTTATTCCACGTTTTCCGTCTCTTGGCTCTGCAACATTCCA- 2209
Query 2189 ATGAGATATCATACTTCGAGATATCATCCAAAGAAGTAACAAACCTTAACTATATTTATA 2248
||||||||||||||| ||||||||||||||| |||||||| ||||| ||||||||||||
Sbjct 2210 ATGAGATATCATACTCCGAGATATCATCCAATGAAGTAACGAACCT-AACTATATTTATT 2268
Query 2249 CGCTTTATGGAAAATGACAACAGTAGGTAAGTTTTAAATCCATT-TTTACTTCTCGtttt 2307
||||||||||||| ||||||||||||||||||||||||||| || ||||||| || |||
Sbjct 2269 CGCTTTATGGAAA-TGACAACAGTAGGTAAGTTTTAAATCC-TTATTTACTTGTCCCTTT 2326
Query 2308 tttGGTCTAACAAGCTTCTTCT-GCTTCTTGTTTCTTATCTCCTTCCTCT-TGAACCTTG 2365
|||||||||||||||||||| | | |||||||||||||| ||| |||||| | |||||||
Sbjct 2327 TTTGGTCTAACAAGCTTCTTTTTG-TTCTTGTTTCTTATTTCCGTCCTCTCT-AACCTTG 2384
Query 2366 TAATCTTTATACTGAAAGCTGTTTCACAATCTTGTTACTTATAGTTTGGTCCCAAACCTG 2425
|||||||||| ||||||||||||||||||||||||| |||| | || ||||| |||||||
Sbjct 2385 TAATCTTTATGCTGAAAGCTGTTTCACAATCTTGTTGCTTA-ACTT-GGTCCAAAACCTG 2442
Query 2426 TCTATGTCCCTCTGTTTCTGTCCCTTGTTTCATGTAGAGTAAAAAATGGTTATTGTCTTA 2485
| | ||||||||||||||| |||| ||||||||||||||||| | |||||||||||||
Sbjct 2443 TTTCTGTCCCTCTGTTTCTCCCCCTGGTTTCATGTAGAGTAAACA--GGTTATTGTCTTA 2500
Query 2486 ATATC--ATACACGTTTTAGTGAAAGATGATTGTTTAAA 2522
|||| |||||||||| ||| | |||||||||||||||
Sbjct 2501 ATATATTATACACGTTT-AGTCACAGATGATTGTTTAAA 2538
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 125166522785
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5