BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494333
Length=1592
Score E
Sequences producing significant alignments: (Bits) Value
AT5G46390.2 | Symbols: | Peptidase S41 family protein | chr5:1... 2451 0.0
> AT5G46390.2 | Symbols: | Peptidase S41 family protein | chr5:18816585-18819348
FORWARD LENGTH=1697
Length=1697
Score = 2451 bits (1327), Expect = 0.0
Identities = 1482/1559 (95%), Gaps = 2/1559 (0%)
Strand=Plus/Plus
Query 1 TTTGAATCTTGACCGTTaaaaaaaGATGAGGCTTTTGCTTCCATTTTCATCGCCGTTATC 60
|||||| ||||||||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct 3 TTTGAAGCTTGACCGTTAAACAAAGATGAGGCTTTTGCTTCCATTTTCCTCGCCGTTATC 62
Query 61 CGCCACGTCATCACCGGCGACGCCGCAATTTCTCCCGGAA-TATACACTTCCGTCTCAAT 119
|||||||||||||||| |||||||||||||| |||| ||| | | ||| |||||||||||
Sbjct 63 CGCCACGTCATCACCGTCGACGCCGCAATTTATCCCTGAACT-TCCACCTCCGTCTCAAT 121
Query 120 TCGACTACTCTGCCCTTAGTAAAATTCTCAAAAAATCGGTAATCGGAACCCTAACCGGAG 179
| |||||||| | || | ||||||||| |||||||||||||||||||||||||||||||
Sbjct 122 TTGACTACTCGGGTCTAACTAAAATTCTTAAAAAATCGGTAATCGGAACCCTAACCGGAG 181
Query 180 CTCTCTCGCTCACTCTCGTTTTCTCGTCGCCGATTTCCTCCGTTGCTGCTACTAATGATC 239
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 182 CTCTATCGCTCACTCTCGTTTTCTCGTCGCCGATTTCCTCCGTTGCTGCTACTAATGATC 241
Query 240 CTTATCTCTCTCTCAATCCTCCTTCTTCATCGTTTGAATCTTCACTGAATCACTTTGATT 299
||||||||||| ||||||||||||| ||||||||||||||||| ||||||||||| ||||
Sbjct 242 CTTATCTCTCTGTCAATCCTCCTTCGTCATCGTTTGAATCTTCTCTGAATCACTTCGATT 301
Query 300 CGTCTCCGGAGGATTGTCCTAACGAGGAAGAAGCTGATACTGAGATTCAAGATGATGACT 359
|| |||| || ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 302 CGGCTCCTGAAGATTGTCCTAATGAGGAAGAAGCTGATACTGAGATTCAAGATGATGACA 361
Query 360 TTAAGCCTCAATTAGTAACCAATGAAGGGATTGTTGAAGAAGCTTGGGAGATTGTTAACG 419
|| ||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 362 TTGAGCCTCAGTTAGTAACTAATGAAGGGATTGTTGAAGAAGCTTGGGAGATTGTTAATG 421
Query 420 GTGCCTTTCTCGATACTCGTAGCCATAGTTGGACTCCTGAAACTTGGCAGAAACAGAAGG 479
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 422 GTGCCTTTCTAGATACTCGTAGCCATAGCTGGACTCCTGAAACTTGGCAGAAACAGAAGG 481
Query 480 ATGATATATTGGCTAGTCCAATTAAGAGTAGATCAAAGGCTCATGAAGTGATTAAGAATA 539
|||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||| |
Sbjct 482 ATGATATATTAGCTAGTCCTATTAAGAGTAGATCGAAGGCTCATGAAGTGATTAAGAACA 541
Query 540 TGTTGGCAAGTTTGGGTGATCAATACACTCGATTTCTATCACCAGATGAGTTTTCTAGGA 599
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 542 TGTTGGCTAGTTTGGGTGATCAATACACTCGATTCCTATCACCAGATGAGTTTTCTAGGA 601
Query 600 TGTCGAAGTATGACATTACTGGTATTGGAATAAACCTTAGAGAAGTTTCTGATGGTGGTG 659
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 602 TGTCGAAGTATGACATTACTGGTATTGGAATTAACCTTAGAGAAGTTTCTGATGGTGGTG 661
Query 660 GAAATGTAAAGTTGAAGGTTCTTGGTCTTGTATTGGACAGTCCTGCTGATATTGCTGGTG 719
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 662 GAAATGTAAAGTTGAAGGTTCTTGGTCTTGTATTGGACAGTGCTGCTGATATTGCTGGTG 721
Query 720 TGAAACAGGGAGATGAAATTCTTGCTGTCAATGGAATAGATGTTAGTGGGAAATCATCAT 779
|||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||| |
Sbjct 722 TGAAACAGGGAGATGAAATTCTGGCTGTCAATGGAATGGATGTCAGTGGGAAATCATCCT 781
Query 780 TTGAAGTATCATCTTTGTTGCAAGGCCCTAGTAAAACTTTTGTGGTTCTCAAGGTGAAGC 839
|||||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 782 TTGAAGTATCGTCTTTGTTACAAGGCCCTAGTAAAACTTTTGTAGTTCTCAAGGTGAAGC 841
Query 840 ATGGGAAGTGTGGACCTGTTAAGTCTCTTAAAATCCAGAGACAAGTTAATGCACTGACCC 899
|||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct 842 ATGGGAAGTGTGGACCTGTTAAGTCTCTGAAAATCCAGAGACAAGTTAATGCACAGACCC 901
Query 900 CAGTCTCTTATCGGTTGGAAAAAGTTGACAATGGAACAGTCTCTGTCGGGTATATTCGCC 959
|||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 902 CAGTTTCTTACCGGTTGGAAAAAGTTGACAATGGAACAGTCTCTGTCGGGTATATTCGTC 961
Query 960 TGAAAGAGTTCAATGCTCTGGCTAGAAAAGATTTGGTGATTGCAATGAAACGACTCCAAG 1019
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||
Sbjct 962 TAAAAGAGTTCAATGCGCTGGCTAGAAAAGATTTGGTGATTGCAATGAAACGACTCCTAG 1021
Query 1020 ACAAGGGTGCGTCTTATTTCGTAATGGATCTTAGAGATAACCTTGGTGGACTTGTGCAGG 1079
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1022 ACAAGGGTGCGTCTTATTTTGTAATGGATCTTAGAGATAACCTTGGTGGACTTGTGCAGG 1081
Query 1080 CTGGAATAGAAACTGCTAAGTTGTTCCTAGATGAAGGGGATACGGTGATATATACAGCTG 1139
|||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |
Sbjct 1082 CTGGAATAGAAACTGCTAAGCTGTTCCTAGATGAAGGAGATACGGTGATATATACAGCGG 1141
Query 1140 GGAGAGACCCCGAGGCTCAAAAAACTGTTGTTTCAGATAAGAAACCGTTGATCACTGCCC 1199
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1142 GGAGAGACCCCGAGGCTCAAAAAACTGTTGTTTCAGATAAGAAACCTTTGATCACTGCCC 1201
Query 1200 CACTTATTGTAATGGTAAATAGCAGAACAGCAAGTGCTAGTGAAATTGTGGCCTCTGCAC 1259
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1202 CACTTATTGTAATGGTAAATAACAGAACAGCAAGTGCTAGTGAAATTGTGGCCTCTGCAC 1261
Query 1260 TTCATGATAACTGTAAAGCAGTTCTCGTTGGCGAAAGAACTTACGGAAAGGGTTTGATTC 1319
||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 1262 TTCATGATAACTGTAAAGCAGTTCTTGTTGGCGAAAGAACTTATGGAAAGGGTTTGATTC 1321
Query 1320 AATCGGTGTACGAACTCCGAGATGGTTCAGGAGTTGTTGTGACAATAGGAAAGTACGTCA 1379
|||||||||| || |||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 1322 AATCGGTGTATGAGCTCCGAGATGGTTCAGGAGTTGTTGTGACAATAGGAAAATATGTCA 1381
Query 1380 CACCTAACCATATGGACATCAATGGTGGTGGAATTGAACCTGATTTCAGAAATTTACCAG 1439
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1382 CACCTAACCATATGGATATCAACGGTGGTGGAATTGAACCTGATTTCAGAAATTTACCAG 1441
Query 1440 CTTGGGATGAAGTTAAAGAACGTTTATCTAAGTGCAATATTCTCCAACGAAGTTGACGTG 1499
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||
Sbjct 1442 CTTGGGATGAAGTTAAAGAACGTTTATCTAAGTGCAGTATTCTCCAACAAAGTTGACATG 1501
Query 1500 CAACGAAACTCATCAAGCTTTGTACTTATTATTCTTTGCTTAAACCACAACaaaaaaaa 1558
| | ||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 1502 CTATGAAACTCATCAAGCTGTGTACTTATTATTCTTTGCTCAAACCACAACAAAAAAAA 1560
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78614053470
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5