BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494335
Length=1619
Score E
Sequences producing significant alignments: (Bits) Value
AT5G46380.1 | Symbols: | Kinase-related protein of unknown fun... 857 0.0
> AT5G46380.1 | Symbols: | Kinase-related protein of unknown function
(DUF1296) | chr5:18813088-18815974 REVERSE LENGTH=1824
Length=1824
Score = 857 bits (464), Expect = 0.0
Identities = 678/775 (87%), Gaps = 40/775 (5%)
Strand=Plus/Plus
Query 877 AACTGTGATCAGACAGAACCTATTCAAGAAAACCAGTACACGTCTTCATCTGCTACAGAT 936
||||||||||| |||||||||| ||||||||| |||||||||||||||||||||||||||
Sbjct 1012 AACTGTGATCATACAGAACCTACTCAAGAAAATCAGTACACGTCTTCATCTGCTACAGAT 1071
Query 937 TTCTCATTTTATAATAGTCAGCTGTTCAATCCTGTGACGGCTCCTTCAGAACGAAGTCTT 996
||| ||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 1072 TTCACATTTTATAATAGTCAGCTGTTCAATCCTGTGATGGCTCCTGCAGAACGAAGTCTT 1131
Query 997 CAGATG-CAAAGTTTGAATACC-TTCCCTGACACTATGCATCAACAAGCATACACGAGGG 1054
|||||| |||| |||||||||| ||||| ||| |||||||||||||||||| ||| ||||
Sbjct 1132 CAGATGCCAAA-TTTGAATACCTTTCCC-GACTCTATGCATCAACAAGCATTCACAAGGG 1189
Query 1055 AAC-TG-G-ATCCTTGGTACTTGGCTTCTCCTCAT-AATCAGTCAATGCCTGGTGCATCT 1110
||| || | || ||||||||| ||||||||||| | |||||||||||| || ||| |||
Sbjct 1190 AACATGTGAATGCTTGGTACTCGGCTTCTCCTC-TCAATCAGTCAATGTATGCTGCCTCT 1248
Query 1111 TCACTTGGTCGTAGGCTATCAGTTTCCATGA-C---------CG---AG--ATG-A--AC 1152
|||||||||||||||||| |||||||||||| | || || ||| | ||
Sbjct 1249 TCACTTGGTCGTAGGCTACCAGTTTCCATGACCGAGATGAATCGACAAGCCATGAACCAC 1308
Query 1153 CACCTTTACTCTCAGCCTAATGTTCCTTCAGAGCATTATAGTAATATGATGAACTGTCCT 1212
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct 1309 CACCTTTACCCTCAGCCTAATGTTCCTTCAGAGCATTATGGTAATATGATGAACTATCCT 1368
Query 1213 TACTCTCTGCCAACACAG-A-G-TGATACCTACGACATGCCAACATCAGCATTTCGGCAA 1269
|||||||||||||||||| | | | ||||||||||||||||| |||||||||||| ||||
Sbjct 1369 TACTCTCTGCCAACACAGAATGATAATACCTACGACATGCCAGCATCAGCATTTCAGCAA 1428
Query 1270 CATGGTGGTGGTAACAACAACGCCTACCATCTTCATCCTTTAGTTGCA-C-C-TCCTTTG 1326
||||||||| ||||||| ||||||||||||||| ||||||||||||| | | |||||||
Sbjct 1429 CATGGTGGTCTTAACAACGACGCCTACCATCTTCGTCCTTTAGTTGCACCGCTTCCTTTG 1488
Query 1327 CACAGAAACAGTTATCCATGTCTACCAACTGTCGCTGCTGGTACTTCCACTCGGAGTTCT 1386
|||||| ||||||||||||||| ||||||| ||||||||||| ||| |||||| ||||||
Sbjct 1489 CACAGAGACAGTTATCCATGTCCACCAACTCTCGCTGCTGGTCCTTACACTCGTAGTTCT 1548
Query 1387 GCTTACGGTTCCACTAATGGTTCGGCTTACGATTCTGCTTACAGTTTTGGCATGTTGAGT 1446
|||||||||||| |||||||| |||||||||||||||||||| ||| ||||||||| |||
Sbjct 1549 GCTTACGGTTCCGCTAATGGTCCGGCTTACGATTCTGCTTACGGTTGTGGCATGTTAAGT 1608
Query 1447 G---ATAACACTGCGAACTTGAGGTTTGA-GTATGAAGATGACTTGCACACACGATTTAG 1502
| ||||||||||||||||||||||||| | ||||||||||||| |||||||| |||||
Sbjct 1609 GATCATAACACTGCGAACTTGAGGTTTGACG-ATGAAGATGACTTCCACACACGGTTTAG 1667
Query 1503 CAATCACTTGGCATCACTTCAGCATCAGGGTAGGAACTCAAATATGTGGACTCCTCAAGG 1562
|||||||||||||||||||||||||||| | ||| ||||| |||||||||||||| |||
Sbjct 1668 CAATCACTTGGCATCACTTCAGCATCAGAATGGGACCTCAAGTATGTGGACTCCTCCAGG 1727
Query 1563 AC-ACAACGAGTCAAGAAGGAATTATTGCAGCGTATTCCCGGGTGATCAGAATCA 1616
| | ||||| ||| |||| | ||||| | || ||| | ||||| |||||||||
Sbjct 1728 GCTA-AACGAATCAGGAAGCAGTTATTACCGCTTATACTCGGGTCCTCAGAATCA 1781
Score = 237 bits (128), Expect = 3e-61
Identities = 418/542 (77%), Gaps = 83/542 (15%)
Strand=Plus/Plus
Query 385 TCAGCTTCACCAAAAGAGAGTGTAACTAAAGCTCCTGTCAA-G--GA-TG-----TACAT 435
||||||||| ||||||| ||||||||||||||||||||||| | || || ||| |
Sbjct 475 TCAGCTTCATCAAAAGATAGTGTAACTAAAGCTCCTGTCAAGGATGATTGCCTCTTACCT 534
Query 436 GAGAATCCAGTTGTTCCTAATCAATTCTCTAACTCATTTATTGAGTCTGCTGCTAGAAGA 495
||||| ||||||| |||||||| ||| ||||||||||||| |||| ||||||||||||||
Sbjct 535 GAGAAGCCAGTTGCTCCTAATCCATTTTCTAACTCATTTAATGAGCCTGCTGCTAGAAGA 594
Query 496 GATCAACTTCAAGAATCTGCTTCAGTATCCACCCAAAT-----G---T-----CT-A-AT 540
|||||||||||||||||| |||| ||||||| |||||| | | || | ||
Sbjct 595 GATCAACTTCAAGAATCTCCTTCGGTATCCAACCAAATATTTCGCAATGGAGGCTCACAT 654
Query 541 --G-------ACAATTACAATAACAAAAACGATGAGACTTACCAAGTGAAAAGATGTTCT 591
| ||||||||||||||||||| ||||||||| |||||||| ||||| |||||
Sbjct 655 TTGTTGCGTGACAATTACAATAACAAAAATGATGAGACTAACCAAGTGCAAAGAAGTTCT 714
Query 592 TTTGAGAACAATCGAACCAAAGATCCTTTCGC-GCCAGCAAATTTAGACCAATATATTAA 650
| |||||||||||||||||||||||| | || ||| | |||| |||||||| || ||
Sbjct 715 TGTGAGAACAATCGAACCAAAGATCCGT-CGGTGCCTGTTAATTCAGACCAATGTAATAG 773
Query 651 CGAGTTAAAGAAATTGA-GATTTGGACGTTTTGGTTCTGG-GA--TA-A-ATGGATC-TG 703
||| ||| |||| |||| | ||||| |||||||||||||| || || | ||| || ||
Sbjct 774 CGACTTACAGAATTTGAAG-TTTGGTCGTTTTGGTTCTGGCGAAGTACATATG-ATTATG 831
Query 704 G-CGAA-CATAGCA-G--TCTCCCATCACAGTTCTTGAATGATGACTCAGAAGATATATC 758
| || || ||| | ||||||||||||||||||||||||| | | |
Sbjct 832 AAC-AATCAAAGCTTGGCTCTCCCATCACAGTTCTTGAATGAT--C-C------T----- 876
Query 759 CGGTTTTGCAGATGATTTGTCTCTCAGACGCCTGAACTTAAGAGATGGTGAGTGCCATGA 818
| |||||||||||||| |||||| ||||||||||||||||| | | ||
Sbjct 877 -G------CAGATGATTTGTCTTTCAGACACCTGAACTTAAGAGATG---A-----A-GA 920
Query 819 AGAGGAACAACAACAACCAAGGATGAATGTTGCAAATGAACAAATGGCATATGAAATCAA 878
| | || ||||||||||||| ||||||||||| |||||| |||||||||||||| ||||
Sbjct 921 -G-G-AAGAACAACAACCAAGAATGAATGTTGCTAATGAAAAAATGGCATATGAAGTCAA 977
Query 879 CT 880
||
Sbjct 978 CT 979
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79969468185
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5