BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494336
Length=1387
Score E
Sequences producing significant alignments: (Bits) Value
AT5G46370.1 | Symbols: KCO2, ATTPK2, ATKCO2 | Ca2+ activated ou... 1921 0.0
AT4G18160.1 | Symbols: KCO6, ATTPK3, ATKCO6, TPK3 | Ca2+ activa... 776 0.0
AT5G46360.1 | Symbols: KCO3, ATKCO3 | Ca2+ activated outward re... 154 2e-36
> AT5G46370.1 | Symbols: KCO2, ATTPK2, ATKCO2 | Ca2+ activated
outward rectifying K+ channel 2 | chr5:18809576-18811772 REVERSE
LENGTH=1431
Length=1431
Score = 1921 bits (1040), Expect = 0.0
Identities = 1291/1409 (92%), Gaps = 29/1409 (2%)
Strand=Plus/Plus
Query 1 AACTTTCCGGTTTCCCGGCGAAAACCCAGATGGCAAACAACGGTAACGGCGATAACAACA 60
|||||||| ||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 24 AACTTTCCAGTTTCCCGGCGAAAACCCAGATGGCTAACGACGGTAACGGCGATAACAACG 83
Query 61 ATGACCCATTACGCCAATACTTGAT-----------T-AA--C-CGACCACCGTCTCTGT 105
||||||||||||||||||||||||| | || | | ||||||||||||||
Sbjct 84 ATGACCCATTACGCCAATACTTGATGAACCCAAGAATCAACCCACCACCACCGTCTCTGT 143
Query 106 TACCATTACCGGAGAACAACGACGTCACGATTCCGATGCCAATAACACCATCGGAA-TTC 164
|| |||||||||||||||| |||||||| ||||||||||||||||| |||| |||| ||
Sbjct 144 TAACATTACCGGAGAACAATGACGTCACAATTCCGATGCCAATAACTCCATTGGAACTT- 202
Query 165 AAAAACCGGTTAATCTTCGGACCACTCCCTCGTTCTCA-AAAAGATTCATCTTTTCTCAT 223
|||||||| ||||||||||| || || ||||||| | |||||| |||||| ||| |||
Sbjct 203 AAAAACCGATTAATCTTCGGTTCATTCGTTCGTTCT-AGAAAAGAATCATCTCTTCCCAT 261
Query 224 CGATGCTCTCTCTCTAAACCCTTCTCCGTCATCCTCTGCTACAACCTCATTCTCTGACTC 283
|||||||||||||| |||||||||| |||||||||| || |||||||||||||| || ||
Sbjct 262 CGATGCTCTCTCTCAAAACCCTTCTACGTCATCCTCCGCCACAACCTCATTCTCCGATTC 321
Query 284 CACAGACCTCCTTATCCCACTTACGGAGCCTAATAAACCGACCCGGAAACCTAAACCGAC 343
||||||||||||| |||||||||||||||||||||||||| |||||| ||||||||||
Sbjct 322 CACAGACCTCCTTCTCCCACTTACGGAGCCTAATAAACCGGTTCGGAAATCTAAACCGAC 381
Query 344 CGTCAATTTCCACCGGTCTAAAACAGCTCCTGCTATGGCTGGAATCAACGATAAATCTCA 403
| ||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||
Sbjct 382 CATCAATTTCCACCGGTCTAAAACAGCTCCTGCTATGGCTGCAATCAACAATATATCTCA 441
Query 404 -CCCAAATGATCCCAAAACAGAGCAGCAATCTGATTCGAAAAAGATTGTAAAACAAGCTA 462
||| ||||||||||||||||| ||||||||||||||||||| |||||||| ||||||
Sbjct 442 TCCC-AATGATCCCAAAACAGATCAGCAATCTGATTCGAAAACTATTGTAAACCAAGCTG 500
Query 463 TTGCTTTGCTTGTTGTGTATCTCTCTTTAGGTGTG-TTCATCTATTGGTTGAATCGAGAT 521
||||||| |||||||||||||| || ||||||||| || |||||||||||||||||||||
Sbjct 501 TTGCTTTACTTGTTGTGTATCTATCCTTAGGTGTGCTT-ATCTATTGGTTGAATCGAGAT 559
Query 522 AGCTACAATGTGAAGAAGACTCATCCTGTTGTTGATGCTTTGTACTTTTGTATTGTTACA 581
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 560 AGCTACAATGTGAAGCAGACTCATCCTGTTGTTGATGCTTTGTACTTTTGTATTGTTACG 619
Query 582 ATGTGTACAATTGGGTATGGAGACATTACGCCGGATAGCGTGGTGACGAAGCTGTTTTCG 641
|||||||| |||||||||||||| || |||||||||||||||||||| ||||||||||||
Sbjct 620 ATGTGTACGATTGGGTATGGAGATATAACGCCGGATAGCGTGGTGACCAAGCTGTTTTCG 679
Query 642 ATCTTGTTCGTGCTCGTTGGGTTTGGTTTTATGGATATATTGCTTAGTGGAATGGTTACT 701
|| || || ||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 680 ATATTTTTTGTGCTTGTTGGGTTTGGTTTTATGGATATATTGCTTAGTGGGATGGTTACT 739
Query 702 TATGTTCTTGATCTTCAAGAAAACTATATGTTAGAAACTGCGAGGAATGAAAGCTTGAAC 761
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 740 TATGTTCTTGATCTTCAAGAAAACTATATGTTGGAAACTGCGAGGAATGAAAGCTTGAAC 799
Query 762 TTGAATGACCGGGAGAAAGCGAAATCGTATATAATTGATGTCAAGAAAGGGAGGATGAGG 821
|||||||| ||||| |||| || |||||||||||| ||||||||||||||||||||||||
Sbjct 800 TTGAATGATCGGGACAAAGTGAGATCGTATATAATCGATGTCAAGAAAGGGAGGATGAGG 859
Query 822 ATTAGGTTGAAAGTTGGGTTGGCATTGGGTGTTGTGGTGTTATGCCTTGGATTTGGTGTT 881
|||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 860 ATTAGGTTGAAAGTAGGGTTGGCATTAGGTGTTGTGGTGTTATGCCTTGGATTTGGAGTT 919
Query 882 TTGATTATGCATTTTGTTGAGGAAATCGGGTGGTTGGATTCGTTTTATTTCTCGGTTATG 941
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 920 TTGATTATGCATTTTGTTGAGAAAATCGGGTGGTTGGATTCGTTTTATTTCTCGGTTATG 979
Query 942 TCGGTTACTACGGTTGGGTATGGTGATCGGGCTTTTAATACATTGCCCGGTAGGCTTCTT 1001
|||||||||||||||||||||||||| |||||||||||||| ||| ||||||||||||||
Sbjct 980 TCGGTTACTACGGTTGGGTATGGTGACCGGGCTTTTAATACCTTGGCCGGTAGGCTTCTT 1039
Query 1002 GCTGCGATATGGTTGCTGGTGTCTACTTTAGCTGTTGCTCGAGCG-tttttttATTTGGC 1060
|||||||| |||||||| || ||||||||||| |||||||||||| |||| || ||||||
Sbjct 1040 GCTGCGATGTGGTTGCTTGTTTCTACTTTAGCGGTTGCTCGAGCGATTTTGTT-TTTGGC 1098
Query 1061 TGAAGCAAGAGTTGATAAGAGGAATAGAGAGCGGGCGAAGAAGGTGCTTGGCGAAAACAT 1120
|||| |||||||||||||||||||||| |||||||||||||| || || ||||||| |||
Sbjct 1099 TGAATCAAGAGTTGATAAGAGGAATAGGGAGCGGGCGAAGAAAGTTCTCGGCGAAAGCAT 1158
Query 1121 GTCTATCTCTCAGTTCTTTGATGCGGATATCGACTACAATGGCTGCGTGAGTAAAGCAGA 1180
|||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct 1159 GTCTATCTCTCAGTTCTTAGATGCGGATATCGACTGTAATGGCTGCGTGAGTAAAGCAGA 1218
Query 1181 GTTTGTGATATACAAACTAAAGAAGATGGAGAAAATAACCGATAAGGACATTAACCCGAT 1240
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 1219 GTTTGTGATATACAAACTAAAGAAGATGGACAAAATAACCGAAAAGGACATTAACCCGAT 1278
Query 1241 CGGTTTCCAGTTTGACAAGCTTGACCGAACCAATAGTGGAAGGATTACACTTTTAGATCT 1300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1279 CGGTTTCCAGTTTGACAAGCTTGACCGAACCAATAGTGGAAGGATTACACTTTTAGATCT 1338
Query 1301 CTTGGAAACCAGCACCGACGATTTATCCACTGCAACTTCTATTTAAG-AACACACAGT-A 1358
||||||| |||||| | |||||| ||||||||||||||||||| | |||||||| | |
Sbjct 1339 TTTGGAAAGCAGCACAAAAGATTTACCCACTGCAACTTCTATTTA-GTAACACACA-TCA 1396
Query 1359 CAACATGATTGAAGATGACAATGAAAAAT 1387
|||||||||||||||||||||||| ||||
Sbjct 1397 CAACATGATTGAAGATGACAATGATAAAT 1425
> AT4G18160.1 | Symbols: KCO6, ATTPK3, ATKCO6, TPK3 | Ca2+ activated
outward rectifying K+ channel 6 | chr4:10055696-10057736
FORWARD LENGTH=1501
Length=1501
Score = 776 bits (420), Expect = 0.0
Identities = 732/876 (84%), Gaps = 48/876 (5%)
Strand=Plus/Plus
Query 450 GTAAAACAAGCTATTGCT-TTGCTTGTTGTGTATCTCTCTTTAGGTGTG-TTCATCTATT 507
|||| ||||||| ||||| || || ||||||||||||||| |||||||| || |||||||
Sbjct 448 GTAAGACAAGCTTTTGCTCTT-CTCGTTGTGTATCTCTCTCTAGGTGTGCTT-ATCTATT 505
Query 508 GGTTGAATCGAGAT-AGCTACAATGTGAA-GAAGACTCATCCTGTTGTTGATGCTTTGTA 565
|| ||||||| ||| | |||| |||||| || || |||||||| ||||||| |||||
Sbjct 506 GGCTGAATCGTGATCA-CTACGTTGTGAATCAA-ACCCATCCTGTAGTTGATGGATTGTA 563
Query 566 CTTTTGTATTGTTACAATGTGTACAATTGGGTATGGAGACATTACGCCGGATAGCGTGGT 625
|||||||| ||||||||||| || ||||| ||||||||||| || || | || |||||
Sbjct 564 TTTTTGTATCGTTACAATGTGCACCATTGGTTATGGAGACATCACTCCAAACAGTGTGGT 623
Query 626 GACGAAGCTGTTTTCGATCT-TGTTCGTGCTCGTTGGGTTTGGTTTTATGGATATATTGC 684
|| |||||||||||||| | |||| ||||| |||||||||||||| || ||||| ||||
Sbjct 624 TACTAAGCTGTTTTCGAT-TATGTTTGTGCTTGTTGGGTTTGGTTTCATTGATATTTTGC 682
Query 685 TTAGTGGAATGGT-TACTTATGTTCTTGATCTTCAAGAAAACTATATGTTAGAAACTGCG 743
||||||| ||||| | ||||||||||||| |||||||| | ||||||||||| ||| |
Sbjct 683 TTAGTGGGATGGTCT-CTTATGTTCTTGACCTTCAAGAGAGCTATATGTTAG--ACT-C- 737
Query 744 AGGAATGAAAGCTTGAACTTGA-ATGA-CCGGGAGAA-AGCGAAATCGTATATAATTGAT 800
| | |||| | | || |||| || ||||| || || ||| |||||||| |||
Sbjct 738 -TG-CT--AAGC--GGA---GAGATGAGCC-TGAGAAGAG-GAGATCTTATATAATCGAT 786
Query 801 GTCAAGAAAGGGAGGATGAGGATTAGGTTGAAAGTTGG-GTTGGCATTGGGTGTTGTGGT 859
|||||||||||||| ||||| ||||||||||||| ||| |||||||| |||||||||||
Sbjct 787 GTCAAGAAAGGGAGAATGAGAATTAGGTTGAAAG-TGGCTTTGGCATTAGGTGTTGTGGT 845
Query 860 GTTATGCCTTGGAT-TTGGTGTTTTGATTATGCATTTTGTTGAGGAAATCGGGTGGTTGG 918
|||||| || | | |||||||| |||||||||||| |||||||||||||||||||||
Sbjct 846 TTTATGCATT-GCTGTTGGTGTTGGGATTATGCATTTCATTGAGGAAATCGGGTGGTTGG 904
Query 919 ATTCGTTTTATTTCTCGGTTATGTCGGTTACTACGGTTGGGTATGGTGATCGGGCTTTTA 978
||||||||||| |||||||||||||||||||||| || |||||||| |||||||||||||
Sbjct 905 ATTCGTTTTATCTCTCGGTTATGTCGGTTACTACTGTCGGGTATGGAGATCGGGCTTTTA 964
Query 979 ATACATTGCCCGGTAGGCTTCTT-GCTGCGATATGGTTGCTGGTGTCTACTTTAGCTGTT 1037
| |||||||||||||||||| || |||||||||||| |||| |||||||| ||||||||
Sbjct 965 AGACATTGCCCGGTAGGCTT-TTCGCTGCGATATGGCTGCTTGTGTCTACATTAGCTGTG 1023
Query 1038 GCTCGAGCGtttttt-tATTTGGCTGAAGCAAGAGTTGATAAGAGGAATAGAGAGCGGGC 1096
|||||||| |||||| || |||||||| || ||||| ||||||||||||||||| |||||
Sbjct 1024 GCTCGAGC-TTTTTTGTACTTGGCTGAGGCGAGAGTGGATAAGAGGAATAGAGAACGGGC 1082
Query 1097 GAAGAAGGTGCTTGGCGAAAACA-TGTCTATCTCTCAGTTCTTT-GATGCGGATATCGAC 1154
|||||| |||||| | |||| || ||||| |||||||||| ||| | ||| ||||| ||
Sbjct 1083 GAAGAAAGTGCTTTGTGAAA-CAATGTCTGTCTCTCAGTT-TTTCGCTGCAGATATTGA- 1139
Query 1155 TA-CAATGGCTGCGTGAGTAAAGCAGAGTTTGTGATATACAAACTAAAGAAGATGGAGAA 1213
|| ||||||||| |||||||||||||||| ||||||||||||||| ||| ||||||||||
Sbjct 1140 TAACAATGGCTGTGTGAGTAAAGCAGAGTATGTGATATACAAACTGAAGGAGATGGAGAA 1199
Query 1214 AATAACCGATAAGGACAT--TAACCCGATCGGTTTCCAGTTTGACAAGCTTGACCGAACC 1271
|||||||||||||||||| || || ||| ||||||||||| || |||||| |
Sbjct 1200 AATAACCGATAAGGACATACTA-CCA-ATCTCCAAACAGTTTGACAAACTCGACCGATGC 1257
Query 1272 AATAGTGGAAGGATTACACTTTTAGATCTCTTGGAA 1307
| | |||| ||| || ||||||||||||||||||
Sbjct 1258 AGCAACGGAAAGATCACTCTTTTAGATCTCTTGGAA 1293
> AT5G46360.1 | Symbols: KCO3, ATKCO3 | Ca2+ activated outward
rectifying K+ channel 3 | chr5:18806821-18808224 REVERSE LENGTH=910
Length=910
Score = 154 bits (83), Expect = 2e-36
Identities = 133/157 (85%), Gaps = 4/157 (3%)
Strand=Plus/Plus
Query 427 AGCAATCTGATTCGAAAAAGATTGTAAAACAAGCTA-TTGCTTTGCTTGTTGTGTATCTC 485
||||||| | ||||||| |||| || |||||| | |||||||||||||||||||||||
Sbjct 266 AGCAATCAGTTTCGAAATCCATTGCAAGACAAGC-ACTTGCTTTGCTTGTTGTGTATCTC 324
Query 486 TCTTTAGGTGTG-TTCATCTATTGGTTGAATCGAGATAGCTACAATGTGAAGAAGACTCA 544
|||||||||||| || ||||||||| ||| || ||||||| |||||| | | |||||||
Sbjct 325 TCTTTAGGTGTGCTT-ATCTATTGGCTGACTCTAGATAGCGACAATGCGTATCAGACTCA 383
Query 545 TCCTGTTGTTGATGCTTTGTACTTTTGTATTGTTACA 581
|||||||| || |||||||||||||| | |||| |||
Sbjct 384 TCCTGTTGCTGTTGCTTTGTACTTTTTTGTTGTAACA 420
Score = 121 bits (65), Expect = 2e-26
Identities = 77/83 (93%), Gaps = 0/83 (0%)
Strand=Plus/Plus
Query 102 CTGTTACCATTACCGGAGAACAACGACGTCACGATTCCGATGCCAATAACACCATCGGAA 161
|||||||||||||||||||||||||||||||||||| | |||||||| || |||||||||
Sbjct 52 CTGTTACCATTACCGGAGAACAACGACGTCACGATTTCTATGCCAATGACTCCATCGGAA 111
Query 162 TTCAAAAACCGGTTAATCTTCGG 184
||||||||||| ||| |||||||
Sbjct 112 TTCAAAAACCGATTACTCTTCGG 134
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68322941745
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5