BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494337
Length=1304
Score E
Sequences producing significant alignments: (Bits) Value
AT5G46350.1 | Symbols: WRKY8, ATWRKY8 | WRKY DNA-binding protei... 2002 0.0
> AT5G46350.1 | Symbols: WRKY8, ATWRKY8 | WRKY DNA-binding protein
8 | chr5:18801218-18804043 REVERSE LENGTH=1308
Length=1308
Score = 2002 bits (1084), Expect = 0.0
Identities = 1246/1320 (94%), Gaps = 28/1320 (2%)
Strand=Plus/Plus
Query 1 ACCAAATTTAGACCGACTAAAAAATTCATTAACGTGTAAAAAGttc----ttctttcttt 56
||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct 1 ACCAAATTTAGACCGACTAAAAAATTCATTAACGT-AAAAAAGTTCTTGTTTCTTTCTTT 59
Query 57 c--ttcttcttcttcacgctcctctctttgtcattttctttttctttctttttggtttaa 114
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 CTTTTCTTCTTCTTCACGCTCCTCTCTTTGTCATTTTCTTTTTCTTTCTTTTTGGTTTAA 119
Query 115 gatttttctctttgttcttcGTCATGTCTCATGAAATCAAAGATCTTAACAACTATCACT 174
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 GTTTTTTCTCTTTGTTCTTCGTCATGTCTCATGAAATCAAAGATCTTAACAACTATCACT 179
Query 175 ACACTTCATCGTATAATCATTTCAATACCAATAACCAAAATATGATTAATCTCCCTTACG 234
||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||||
Sbjct 180 ACACTTCATCGTATAATCATTACAATATCAACAACCAAAATATGATTAATCTCCCTTACG 239
Query 235 TTTCTGGTCCATCTACTTATAATGCAAACATGATCGCATCATCACAAGCCGGTTTTGATC 294
|||||||||||||| |||||||||||||||||||| |||||||||||| ||||||||||
Sbjct 240 TTTCTGGTCCATCTGCTTATAATGCAAACATGATCTCATCATCACAAGTAGGTTTTGATC 299
Query 295 TACCCTCGAAGAACTTGAGTCCTCAAGGAGCGTTCGAGTTGGGTTTCGAGCTTTCTCCAT 354
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 300 TACCCTCGAAGAACTTGAGTCCTCAAGGAGCCTTCGAGTTGGGTTTCGAGCTTTCTCCAT 359
Query 355 CTTCGTCCGACTTTTTTAATCCTTCGATCGATCAAGAGAACGGTTTGTATAATGCTTATA 414
|||| || ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 360 CTTCTTCTGACTTTTTTAATCCTTCCCTCGATCAAGAGAACGGTTTGTATAATGCTTATA 419
Query 415 ATTATAATAGTAGTCATAAGAGTCATGAAGTTGTCGGTGGA-GGTTGTGCAACCATTAAG 473
|||||||||||||||| |||||||||||||||||||||| | ||||||||||||||||||
Sbjct 420 ATTATAATAGTAGTCAAAAGAGTCATGAAGTTGTCGGTG-ATGGTTGTGCAACCATTAAG 478
Query 474 AGTGAAGTTAGGGTTTC-GCCATCTCCTTCTTCAAGTGAGGCCGATCATCATCCCGGCGA 532
||||||||||||||||| || ||||||||||||||||||||||||||||||||| || ||
Sbjct 479 AGTGAAGTTAGGGTTTCAGC-ATCTCCTTCTTCAAGTGAGGCCGATCATCATCCAGGAGA 537
Query 533 AGATTCCGGAAAGATCCAGAGGAAAAGAGAAGCTGGCGATGGAGGAGAAGATGATCAACG 592
||||||||| ||||||| || ||||||||||| | |||||||||||||||||||||||||
Sbjct 538 AGATTCCGGCAAGATCCGGAAGAAAAGAGAAGTTCGCGATGGAGGAGAAGATGATCAACG 597
Query 593 TTCTCagaaagtagttaaaacaaagaagaaagaggagaagaaaaaagaGCCACGAGTCTC 652
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 CTCTCAGAAAGTAGTTAAAACAAAGAAGAAAGAGGAGAAGAAAAAAGAGCCACGAGTCTC 657
Query 653 GTTTATGACTAAGACCGAAGTTGATCATCTCGAAGACGGCTATCGTTGGAGAAAGTACGG 712
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 658 GTTCATGACTAAGACCGAAGTTGATCATCTCGAAGACGGCTATCGTTGGAGAAAGTATGG 717
Query 713 CCAAAAAGCAGTCAAAAACAGTCCTTATCCGAGGAGTTACTATAGATGCACGACGCAGAA 772
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 718 CCAAAAAGCAGTCAAAAACAGTCCTTATCCGAGGAGTTACTATAGATGCACGACTCAGAA 777
Query 773 GTGCAACGTGAAGAAGAGAGTGGAGAGATCTTACCAAGATCCAACGGTCGTGATCACAAC 832
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 778 GTGCAACGTGAAGAAGAGAGTGGAGAGATCTTACCAAGACCCAACGGTCGTCATCACAAC 837
Query 833 CTACGAGAGTCAACACAACCATCCGATCCCGACCAATCGCCGCACGGCAATGTTCTCTGG 892
||||||||||||||||||||||||||||||||||||||| || || ||||||||||||||
Sbjct 838 CTACGAGAGTCAACACAACCATCCGATCCCGACCAATCGTCGGACAGCAATGTTCTCTGG 897
Query 893 AACCACCGCATCTGATTATAACCCATCGTCATCTCCAATATTTTCCGATCTCATCATCAA 952
||||||||||||||||||||||||||| || ||||||||||| |||||||||||||||||
Sbjct 898 AACCACCGCATCTGATTATAACCCATCATCGTCTCCAATATTCTCCGATCTCATCATCAA 957
Query 953 TACTCCAAGAAGCTTCTCAAATGATGAACTCTTCCGTGTGCCATACGCTAGTATAAATGT 1012
||||||||||||||||||||||||||| |||||||||||||||||||||||| | || ||
Sbjct 958 TACTCCAAGAAGCTTCTCAAATGATGATCTCTTCCGTGTGCCATACGCTAGTGTGAACGT 1017
Query 1013 GAACCCTAATTATCATCAACAGCAACAGGGATTCCATCAACAGGAGAGTGAGTTCGAGCT 1072
|||||||| |||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 1018 GAACCCTAGTTATCATCAACAGCAACATGGATTTCATCAACAGGAGAGTGAGTTCGAGCT 1077
Query 1073 CTTGAAGGAGATGTTTCCTTCGGTTTTCTTCAAGCAAGAGCCTTGATGATATAATATAAT 1132
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1078 CTTGAAGGAGATGTTTCCTTCGGTTTTCTTCAAACAAGAGCCTTGATGATATAATATAAT 1137
Query 1133 ACT-GAAACAAtttttcttttcctttttGCTAAGAAATATAGAA-ACAACTTGGATGCAT 1190
| | |||||||||||| ||| | | |||||||||||||||| | |||||||||||||
Sbjct 1138 A-TAGAAACAATTTTT-TTT-C-T----GCTAAGAAATATAGAACAAAACTTGGATGCAT 1189
Query 1191 AATAAGTGAT-A--GTGTTATTTATTTTT-GCATGTATATATTATACATGTTTTTGT-AA 1245
|||||||||| | ||||||||||||||| |||||||||||||||||||||||| || ||
Sbjct 1190 AATAAGTGATGATAGTGTTATTTATTTTTTGCATGTATATATTATACATGTTTT-GTTAA 1248
Query 1246 CTAGCTATAGGATATACTGTAGTAATTACGCATAA-TATGGAGTCCCTCCGAATTATTAC 1304
|||||||||||||||||||||||||||| |||||| |||||||||||| ||| |||||||
Sbjct 1249 CTAGCTATAGGATATACTGTAGTAATTAAGCATAAATATGGAGTCCCTTCGACTTATTAC 1308
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64156296510
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5