BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494338
Length=2122
Score E
Sequences producing significant alignments: (Bits) Value
AT5G46340.1 | Symbols: | O-acetyltransferase family protein | ... 2693 0.0
> AT5G46340.1 | Symbols: | O-acetyltransferase family protein
| chr5:18795926-18800094 REVERSE LENGTH=2238
Length=2238
Score = 2693 bits (1458), Expect = 0.0
Identities = 1749/1884 (93%), Gaps = 42/1884 (2%)
Strand=Plus/Plus
Query 1 AAAAATCAGTCGCCGGCGACT-GAAAACGACAACTCGCCGAACGtctttctttcttcttc 59
||||||||||||||||||| | ||||||||||||||||||||||||||||| ||||||||
Sbjct 53 AAAAATCAGTCGCCGGCGA-TCGAAAACGACAACTCGCCGAACGTCTTTCTCTCTTCTTC 111
Query 60 aagcaaacaaacactttcacatctctctttctttctctctcGTATTTATGAT--T-AT-T 115
||| |||||||||||||||||||| || |||||||| |||||||||| | | |
Sbjct 112 AAG----CAAACACTTTCACATCTCTC--TC--TCTCTCTCATATTTATGATGATCGTCT 163
Query 116 G-T-CT---GCT-A--ATAACCAGATCATTCTTCTTTATTCGTCGAATTTATC-TCT-GG 165
| | || | | | |||||||||||| |||||||||||||||| ||| | |||
Sbjct 164 GCTACTAGAGATCACTATAACCAGATCA-TCTTCTTTATTCGTCG--GTTAACGTCTCAA 220
Query 166 TGTATCTGCAGTTC-GAATG-CTTGAATAGAGATCGTT-AAAATGGTGGATCCGGGACCT 222
| | ||| | |||| ||| | |||||||||||||||| |||||||||||||| |||||
Sbjct 221 TCTCTCT-CTGTTCGGAA-GTTTTGAATAGAGATCGTTAAAAATGGTGGATCCTGGACCA 278
Query 223 ATTACACCGGGCCAGGTATCTTTTCTAT-TTGGAGTAATACCAATATTTGTTGGTTGGAT 281
||||| |||||||||||||||||||| | |||||||||| ||||||||||||||||||||
Sbjct 279 ATTACTCCGGGCCAGGTATCTTTTCT-TCTTGGAGTAATCCCAATATTTGTTGGTTGGAT 337
Query 282 ATACTCGGAGTCACTTGAATACAGGAAATCTTTGGTTCCCTTGAAACCTCACTCGGATAA 341
||||||||||| |||||| ||||| ||||||| |||||||||||||||||||||||||||
Sbjct 338 ATACTCGGAGTTACTTGAGTACAGAAAATCTTGGGTTCCCTTGAAACCTCACTCGGATAA 397
Query 342 TAATCTGGTTGAACTGGGGGACGTAGCAGAGAAGGACGATGACAAAGCTGATTTGTTGGA 401
|||||| |||||| |||| |||||||||||||||||||| |||||||||||| |||||||
Sbjct 398 TAATCTAGTTGAATTGGGAGACGTAGCAGAGAAGGACGACGACAAAGCTGATCTGTTGGA 457
Query 402 GGGAGGTCTTACCCG-TGCGA-CATCTGTAAGGTTTCATAATTCATCCATCAGAACAAAC 459
|||||||||| |||| | | | ||||||||| ||||||||||||||| ||||||||||||
Sbjct 458 GGGAGGTCTTGCCCGAT-C-ACCATCTGTAAAGTTTCATAATTCATCTATCAGAACAAAC 515
Query 460 ATAGTCAGGTTTTTGAGTATGGAAGATTCATTTTTGCTGGAACACCGTGCAACATTGAGA 519
||| |||||||||||||||||||||||||||||||||||||||| || ||||| ||||||
Sbjct 516 ATAATCAGGTTTTTGAGTATGGAAGATTCATTTTTGCTGGAACATCGAGCAACCTTGAGA 575
Query 520 GCAATGTCGGAGTTTGGGGCAATCTTAATATATTTCTATATCTGTGACCGCACGGAATTG 579
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 576 GCAATGTCGGAATTTGGGGCAATCTTAATATATTTCTATATCTGTGACCGCACAGAATTG 635
Query 580 CTTGGAGATTCTACCAAGCATTACAATCGCGACCTTTTCCTTTTTCTCTACGTTCTTCTC 639
|||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct 636 CTTGGAGATTCTACCAAGAATTACAACCGCGACCTTTTCCTTTTTCTCTACGTTCTTCTC 695
Query 640 ATCATAGTATCAGCCATGACATCTCTCAGAAAACACAATGACAAGTCACCCATAACTGGG 699
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 696 ATCATAGTATCAGCCATGACATCTCTCAGAAAACACAATGACAAGTCACCCATATCTGGG 755
Query 700 AAATCCATTCTTTACCTTAATCGCCACCAGACTGAAGAGTGGAAAGGATGGATGCAGGTT 759
|| |||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 756 AAGTCCATTCTTTACCTTAATCGCCACCAAACTGAAGAATGGAAAGGATGGATGCAGGTT 815
Query 760 TTGTTCTTGATGTATCACTACTTTGCTGCGGCTGAGATTTACAACGCTATCCGTATCTTT 819
|||||||| ||||||||||||||||||||||| ||||| |||||||| ||||||||||||
Sbjct 816 TTGTTCTTAATGTATCACTACTTTGCTGCGGCCGAGATATACAACGCAATCCGTATCTTT 875
Query 820 ATTGCTGCTTACGTCTGGATGACTGGTTTTGGAAACTTTTCGTATTACTACGTCAGAAAG 879
||||||||||| || ||||||||||||||||||||||| || || ||||| |||||||||
Sbjct 876 ATTGCTGCTTATGTTTGGATGACTGGTTTTGGAAACTTCTCTTACTACTATGTCAGAAAG 935
Query 880 GATTTCTCTGTTGCACGTTTTGCACAGATGATGTGGAGGCTGAACTTCTTTGTAGCATTT 939
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 936 GATTTCTCTGTTGCACGTTTTGCGCAGATGATGTGGAGGCTGAACTTCTTTGTAGCGTTT 995
Query 940 TGCTGTATTGTTCTCAACAATGACTATATGTTGTATTACATCTGCCCAATGCACACTCTC 999
|||||||||||||||||||| ||||||||||| || |||||||||||||||||||||||
Sbjct 996 TGCTGTATTGTTCTCAACAACGACTATATGTTATACTACATCTGCCCAATGCACACTCTT 1055
Query 1000 TTCACCCTAATGGTTTACGGAGCTCTGGGTATCTTCAGCAAGTACAATGAGATAGGATCT 1059
|||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 1056 TTCACCCTAATGGTATATGGAGCTCTGGGTATCTTCAGCAAGTACAATGAGATAGGATCG 1115
Query 1060 GTGATGGCTCTGAAAATATTTTCATGCTTCCTCGTTGTCTTTTTGTTATGGGAAGTTCCT 1119
|||||||||||||| |||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 1116 GTGATGGCTCTGAAGATATTTTCATGCTTCCTCGTTGTCTTTTTGTTGTGGGAAATTCCT 1175
Query 1120 GGAGCTTTTGAAATATTCTGGGGTCCATTAACGTTCTTGTTAGGTTACAGTGACCCTGCG 1179
||||||||||||||||| |||||||| ||||| || ||| ||||||||| |||||||||
Sbjct 1176 GGAGCTTTTGAAATATTTTGGGGTCCCTTAACATTTTTGCTAGGTTACAATGACCCTGCC 1235
Query 1180 AAGCCTGATCTTCATCGACTGCATGAATGGCACTTCAGATCAGGCCTTGATCGCTACATA 1239
||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1236 AAGCCCGATCTTCATCGGCTGCATGAATGGCACTTTAGATCAGGCCTTGATCGCTACATA 1295
Query 1240 TGGATCATCGGAATGATTTATGCCTATTATCACCCAACTGTAGAGAGATGGATGGAGAAG 1299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1296 TGGATCATCGGAATGATTTATGCCTATTATCACCCAACTGTAGAGAGATGGATGGAGAAG 1355
Query 1300 TTAGAGGACTGTGAAACGAAGAAAAGACTATCCATAAAGACCACTATTGTTACTATTACT 1359
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 1356 TTAGAGGACTGTGAAACGAAGAAAAGACTATCCATAAAGGCCGCTATTGTTACTATTACT 1415
Query 1360 GTGCTTGTTGGCTATGTGTGGTATGAATGTATCTACAAGCTGGACAGGACCAGTTACAAC 1419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1416 GTGCTTGTTGGCTATGTGTGGTATGAATGTATCTACAAGCTGGACAGGACCAGTTACAAC 1475
Query 1420 ATGTATCATCCATACACATCTTGGATCCCCATCACTGTTTACATATGCCTTCGGAATTTC 1479
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1476 ATGTATCATCCGTACACATCATGGATCCCCATCACTGTTTACATATGCCTTCGGAATTTC 1535
Query 1480 ACCCACCAGCTTCGGAGTGTCTCATTGACTCTCTTCGCGTGGCTTGGCAAGATCACTTTA 1539
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1536 ACCCACCAGCTTCGAAGTGTCTCATTGACTCTCTTTGCGTGGCTTGGCAAGATCACTTTA 1595
Query 1540 GAGACTTACATTTCCCAGTTTCATATATGGCTAAGATCAAACATGCCTGATGGGCAACCA 1599
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1596 GAGACTTACATTTCCCAGTTTCATATATGGCTAAGATCAAACATGCCTGACGGGCAACCA 1655
Query 1600 AAATGGCTTCTCTCTATTATTCCGGGATACTCTATGCTTAATTTCATGCTCACAACTGCA 1659
|||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||
Sbjct 1656 AAATGGCTTCTCTCTATTATTCCGGGATACCCTATGCTCAATTTCATGCTGACAACTGCT 1715
Query 1660 ATTTACATCCTAGTATCTCACCGTCTCTTTGAACTAACCAACACACTCAAGACTGTTTTC 1719
|| ||| |||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1716 ATATACGTCCTTGTATCTCACCGTCTCTTTGAACTAACCAACACACTCAAGACGGTTTTC 1775
Query 1720 GTACCCACAAAAGACAACAAAC-ATCTCTTTTCTAACTTCATAGCTGGGATCGCCATCGC 1778
|||||||||||||||||||| | | ||||| |||||||||||||||||||| ||||||||
Sbjct 1776 GTACCCACAAAAGACAACAAGCGA-CTCTTCTCTAACTTCATAGCTGGGATTGCCATCGC 1834
Query 1779 TCTTCCTCTATATTGCTTCTCATTCGTTCTTCTTCAGATTCATCGTTAGAAACCCGCAAA 1838
|||||| || |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1835 TCTTCCACTCTATTGCTTCTCATTCGTTCTTCTTCAGATTCATCGTTAGAAACC-GCAAA 1893
Query 1839 AAGAAGTGTT-GTTCTTTGTGTTT 1861
|| ||||||| |||||||||||||
Sbjct 1894 AACAAGTGTTTGTTCTTTGTGTTT 1917
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 105220342320
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5