BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg494339 Length=266 Score E Sequences producing significant alignments: (Bits) Value AT5G46320.1 | Symbols: | MADS-box family protein | chr5:187882... 392 8e-109 > AT5G46320.1 | Symbols: | MADS-box family protein | chr5:18788246-18788888 REVERSE LENGTH=357 Length=357 Score = 392 bits (212), Expect = 8e-109 Identities = 248/266 (93%), Gaps = 0/266 (0%) Strand=Plus/Plus Query 1 AGTGCTAGGAGAGTAAGATCTTCGACGAGGCAAACTAGGATTCTCAAGAATCAAGCCAAA 60 ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| Sbjct 88 AGTGCTAGGAGAGTAAGATCTTCAACAAGGCAAACTAGGATTCTCAAGAATCAAGCCAAA 147 Query 61 CTTGATTGTCTCATAGCAGAATTGGAACAAAGCAAAGCATATGAGAAGGTTTTGAGGAAG 120 |||||| ||||||| |||||||||||||||| |||||| ||||||||||||||||||||| Sbjct 148 CTTGATAGTCTCATGGCAGAATTGGAACAAATCAAAGCGTATGAGAAGGTTTTGAGGAAG 207 Query 121 GGGCAAGAACAAAACCTCAAAAACTACAATAGGAAGGAGATTTCAGATCTAAAGTTAGAG 180 ||||||||||| ||| ||||||| |||||||||||||||||||||||||||||||| ||| Sbjct 208 GGGCAAGAACAGAACATCAAAAAGTACAATAGGAAGGAGATTTCAGATCTAAAGTTGGAG 267 Query 181 GACCTGGTTGTTTTTAAGAAAAAACTCGAGAATCTCCAAAATGATTTAGAGAAGAAGCGT 240 ||| ||||||||||| ||||||||||||| ||||||||| |||||||| ||||||| ||| Sbjct 268 GACTTGGTTGTTTTTCAGAAAAAACTCGAAAATCTCCAAGATGATTTAAAGAAGAAACGT 327 Query 241 GTAGTGCTGGAGGCTTCATTGTCTCT 266 |||| |||||||||||| |||||||| Sbjct 328 GTAGAGCTGGAGGCTTCGTTGTCTCT 353 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 12164795258 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5