BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg494339

Length=266
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G46320.1 | Symbols:  | MADS-box family protein | chr5:187882...   392    8e-109


> AT5G46320.1 | Symbols:  | MADS-box family protein | chr5:18788246-18788888 
REVERSE LENGTH=357
Length=357

 Score =  392 bits (212),  Expect = 8e-109
 Identities = 248/266 (93%), Gaps = 0/266 (0%)
 Strand=Plus/Plus

Query  1    AGTGCTAGGAGAGTAAGATCTTCGACGAGGCAAACTAGGATTCTCAAGAATCAAGCCAAA  60
            ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct  88   AGTGCTAGGAGAGTAAGATCTTCAACAAGGCAAACTAGGATTCTCAAGAATCAAGCCAAA  147

Query  61   CTTGATTGTCTCATAGCAGAATTGGAACAAAGCAAAGCATATGAGAAGGTTTTGAGGAAG  120
            |||||| ||||||| |||||||||||||||| |||||| |||||||||||||||||||||
Sbjct  148  CTTGATAGTCTCATGGCAGAATTGGAACAAATCAAAGCGTATGAGAAGGTTTTGAGGAAG  207

Query  121  GGGCAAGAACAAAACCTCAAAAACTACAATAGGAAGGAGATTTCAGATCTAAAGTTAGAG  180
            ||||||||||| ||| ||||||| |||||||||||||||||||||||||||||||| |||
Sbjct  208  GGGCAAGAACAGAACATCAAAAAGTACAATAGGAAGGAGATTTCAGATCTAAAGTTGGAG  267

Query  181  GACCTGGTTGTTTTTAAGAAAAAACTCGAGAATCTCCAAAATGATTTAGAGAAGAAGCGT  240
            ||| ||||||||||| ||||||||||||| ||||||||| |||||||| ||||||| |||
Sbjct  268  GACTTGGTTGTTTTTCAGAAAAAACTCGAAAATCTCCAAGATGATTTAAAGAAGAAACGT  327

Query  241  GTAGTGCTGGAGGCTTCATTGTCTCT  266
            |||| |||||||||||| ||||||||
Sbjct  328  GTAGAGCTGGAGGCTTCGTTGTCTCT  353



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12164795258


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5