BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg494340 Length=1092 Score E Sequences producing significant alignments: (Bits) Value AT5G46310.1 | Symbols: | WRKY family transcription factor | ch... 883 0.0 > AT5G46310.1 | Symbols: | WRKY family transcription factor | chr5:18785672-18786956 FORWARD LENGTH=1119 Length=1119 Score = 883 bits (478), Expect = 0.0 Identities = 949/1158 (82%), Gaps = 105/1158 (9%) Strand=Plus/Plus Query 1 ATGGTTAGGGTTCCACCTTCTAAACCCTCCAAAACCGTCGAAGAAGATGATCCAAAGTTA 60 ||||||||||||||||||| |||||||||| ||| |||| | |||||||||||| Sbjct 1 ATGGTTAGGGTTCCACCTTTTAAACCCTCC-AAA-----GAAG--G-TGATCCAAAGTTG 51 Query 61 GAAACTTTCAAGGAACCTAATCTTGATTCCATCGACTCG--T-CCTTTGG-GAAG--CGC 114 ||||||||||||| | ||||||||||||||| | | | | |||| |||| | | Sbjct 52 GAAACTTTCAAGG-A--TAATCTTGATTCCATAGTCAGGTTTGGGATTGGCGAAGAACTC 108 Query 115 -GAG-GAACGT--A-A--TCTTAATGCCGT-G-G-ATCAATCACCAGCAAAAGATTCAGA 164 ||| || | | | | |||| |||| | | | ||||||||||||| ||||||| ||| Sbjct 109 AGAGTGAGC-TCCACACCTCTTGATGCTATGGAGCATCAATCACCAGCGAAAGATTTAGA 167 Query 165 ATCCGTTGTTTG-TGATC-AA---A-C-CAAGGTGAAAACTTCCGTGGATCCTCCTCTTG 217 ||| | || ||| | ||| || | | |||| ||||||||| | |||||| ||||| Sbjct 168 ATCTGCTG-TTGCTAATCAAAGTGATCTAAAGGGGAAAACTTCTAAGTATCCTCTTCTTG 226 Query 218 ACCTTTCTTTTAAAGATTCTGTTGCTGGTTTTGATTCCCTAGACTGGTTTTGGAGAACTC 277 |||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| Sbjct 227 ACCTTTCTTTTAAAGATTCTGTTGCTGGTTTTGATTCCCTCGACTTGTTTTGGAGAACTC 286 Query 278 CGAGCTTTGAGCAACTTAGAGTGGAAT-TATCCGAGGAACCTCTTGATCTTTATTTGAAA 336 ||| |||| | | | || || ||| |||||||||||||||| ||||||||| | Sbjct 287 CGAACTTT--G-----T---G-GG-ATATAT-CGAGGAACCTCTTGATATTTATTTGAGA 333 Query 337 GATTCGTTCAATTCCATCGCCTCTTTACGTCATGTTTATGT-G--GCT-----A--C-T- 384 ||||||||||||| | ||| |||||| |||||||||| ||| | ||| | | | Sbjct 334 GATTCGTTCAATTACGTCGGCTCTTTCCGTCATGTTTCTGTGGCTGCTGAACCATCCGTG 393 Query 385 ---GAGCCAGAATGGGTTGTTTCTGAGCCATTTGTGCCTGTTTCTTGTGCCACCGTGAAT 441 ||| |||||| ||||||||||||||||||||| ||| ||| || | | || Sbjct 394 AAAGAGTCAGAATCGGTTGTTTCTGAGCCATTTGTATCTGATTC--GT-----C-T--AT 443 Query 442 TTCAATG--AAACGGAGGTGAAGA--AGAGA-GATGATCAAAAAGATAGGGGTGAGAAGG 496 ||| || | ||||||||||| | ||||| ||| |||||||| ||| ||||||||||| Sbjct 444 TTC-TTGTCACACGGAGGTGAATATGAGAGATGATCATCAAAAACATAAGGGTGAGAAGG 502 Query 497 CCAAAAATAAAACGCTTAATGATGAAATCTTGAGCATTTCTTCTTCAAGAAGAGCTGAAG 556 ||||||| ||||| ||||||||||||||| ||||| | || |||| ||||||||||||| Sbjct 503 CCAAAAAGAAAACTCTTAATGATGAAATCGTGAGCCTATCGTCTTGTAGAAGAGCTGAAG 562 Query 557 AGAAGAAGAGTGATGATGAAGAGGACAAAGACGGCGACGATAAGAGAGTAGAAGATAGTT 616 |||||||| |||||||||||||||||||||| |||| |||||||| ||||| ||||||| Sbjct 563 AGAAGAAGTGTGATGATGAAGAGGACAAAGAGGGCGTTGATAAGAGTGTAGATGATAGTT 622 Query 617 TGAGAACAAAAGAAGCCACCATGTCAAAG----G------C------G---TCAAAG-AA 656 |||| ||| ||||||| || ||||||||| | | | || || || Sbjct 623 TGAGTACAGAAGAAGCTACGATGTCAAAGTTTTGCTTCTTCTGTGTTGATTTCTTAGCAA 682 Query 657 ATTTCTC-TGGTTGAACCAGCAGGTGCTaga-agaagaagtgcagaagaatatggcaaca 714 |||| || | ||||| ||||||||| |||| | || || ||||||||||||||||||| Sbjct 683 ATTTATCTTCCTTGAATCAGCAGGTGTTAGACA-AAAAACAGCAGAAGAATATGGCAACA 741 Query 715 aagagaagaagtgaagaaACAAAAACGTGTAGCACAAGTAACAAGAAGAATAAAAACGAA 774 |||||||||||||| || || ||||||||||||||||||||||||||||||||||||| | Sbjct 742 AAGAGAAGAAGTGACGAGACGAAAACGTGTAGCACAAGTAACAAGAAGAATAAAAACGTA 801 Query 775 GTGGTGTCTCCTAGAAGATTAGGAGCAGAAACATGGCTGTCTCTTCCATACCCATATGAT 834 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || Sbjct 802 TTGGTGTCTCCTAGAAGATTAGAAGCAGAAACATGGCTGTCTCTTCCATACCCATATCAT 861 Query 835 CATTATCCAATAAGATATCAGATTATTCAGAGTTCAAGTCAGATGCAAAATTCCAGGATT 894 ||||||||||||| |||||||||||| |||||||| | ||||||||| ||||| ||||| Sbjct 862 CATTATCCAATAAAATATCAGATTATGCAGAGTTCGATTCAGATGCAGCATTCCGGGATT 921 Query 895 GGAACAGAGCCTTTAGTTACATTTCTAGGTCAAAACCGTTTAAACCAACCCATTGGAGGT 954 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 922 GGAACAGAGCCTTTAGTTACATTTGTAGGTCAAAACCGTTTAAACCAACCCATTGGAGGT 981 Query 955 ATAGTTGGTCTCAGTGAGTTTCCTCAAGTTATTGAGGAGCATTGTTCTCCTCCCAATGTA 1014 || |||||||| ||||||||||| ||||||||| |||||| || ||||| ||| |||| | Sbjct 982 ATTGTTGGTCTTAGTGAGTTTCCCCAAGTTATTCAGGAGCTTTATTCTCTTCCTAATGCA 1041 Query 1015 CCACCACTTCCCAACCTCAATCTCCAAACACACCCGCAGCCTCACCTTGGTGGTAGAGTT 1074 || ||||||||||||||||||||||||| |||||| |||||||| || |||||||||||| Sbjct 1042 CCGCCACTTCCCAACCTCAATCTCCAAATACACCCACAGCCTCATCTCGGTGGTAGAGTT 1101 Query 1075 CGAAAGGAGCAGCCTTGA 1092 |||||||||||||||||| Sbjct 1102 CGAAAGGAGCAGCCTTGA 1119 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 53513780970 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5