BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494340
Length=1092
Score E
Sequences producing significant alignments: (Bits) Value
AT5G46310.1 | Symbols: | WRKY family transcription factor | ch... 883 0.0
> AT5G46310.1 | Symbols: | WRKY family transcription factor |
chr5:18785672-18786956 FORWARD LENGTH=1119
Length=1119
Score = 883 bits (478), Expect = 0.0
Identities = 949/1158 (82%), Gaps = 105/1158 (9%)
Strand=Plus/Plus
Query 1 ATGGTTAGGGTTCCACCTTCTAAACCCTCCAAAACCGTCGAAGAAGATGATCCAAAGTTA 60
||||||||||||||||||| |||||||||| ||| |||| | ||||||||||||
Sbjct 1 ATGGTTAGGGTTCCACCTTTTAAACCCTCC-AAA-----GAAG--G-TGATCCAAAGTTG 51
Query 61 GAAACTTTCAAGGAACCTAATCTTGATTCCATCGACTCG--T-CCTTTGG-GAAG--CGC 114
||||||||||||| | ||||||||||||||| | | | | |||| |||| | |
Sbjct 52 GAAACTTTCAAGG-A--TAATCTTGATTCCATAGTCAGGTTTGGGATTGGCGAAGAACTC 108
Query 115 -GAG-GAACGT--A-A--TCTTAATGCCGT-G-G-ATCAATCACCAGCAAAAGATTCAGA 164
||| || | | | | |||| |||| | | | ||||||||||||| ||||||| |||
Sbjct 109 AGAGTGAGC-TCCACACCTCTTGATGCTATGGAGCATCAATCACCAGCGAAAGATTTAGA 167
Query 165 ATCCGTTGTTTG-TGATC-AA---A-C-CAAGGTGAAAACTTCCGTGGATCCTCCTCTTG 217
||| | || ||| | ||| || | | |||| ||||||||| | |||||| |||||
Sbjct 168 ATCTGCTG-TTGCTAATCAAAGTGATCTAAAGGGGAAAACTTCTAAGTATCCTCTTCTTG 226
Query 218 ACCTTTCTTTTAAAGATTCTGTTGCTGGTTTTGATTCCCTAGACTGGTTTTGGAGAACTC 277
|||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct 227 ACCTTTCTTTTAAAGATTCTGTTGCTGGTTTTGATTCCCTCGACTTGTTTTGGAGAACTC 286
Query 278 CGAGCTTTGAGCAACTTAGAGTGGAAT-TATCCGAGGAACCTCTTGATCTTTATTTGAAA 336
||| |||| | | | || || ||| |||||||||||||||| ||||||||| |
Sbjct 287 CGAACTTT--G-----T---G-GG-ATATAT-CGAGGAACCTCTTGATATTTATTTGAGA 333
Query 337 GATTCGTTCAATTCCATCGCCTCTTTACGTCATGTTTATGT-G--GCT-----A--C-T- 384
||||||||||||| | ||| |||||| |||||||||| ||| | ||| | | |
Sbjct 334 GATTCGTTCAATTACGTCGGCTCTTTCCGTCATGTTTCTGTGGCTGCTGAACCATCCGTG 393
Query 385 ---GAGCCAGAATGGGTTGTTTCTGAGCCATTTGTGCCTGTTTCTTGTGCCACCGTGAAT 441
||| |||||| ||||||||||||||||||||| ||| ||| || | | ||
Sbjct 394 AAAGAGTCAGAATCGGTTGTTTCTGAGCCATTTGTATCTGATTC--GT-----C-T--AT 443
Query 442 TTCAATG--AAACGGAGGTGAAGA--AGAGA-GATGATCAAAAAGATAGGGGTGAGAAGG 496
||| || | ||||||||||| | ||||| ||| |||||||| ||| |||||||||||
Sbjct 444 TTC-TTGTCACACGGAGGTGAATATGAGAGATGATCATCAAAAACATAAGGGTGAGAAGG 502
Query 497 CCAAAAATAAAACGCTTAATGATGAAATCTTGAGCATTTCTTCTTCAAGAAGAGCTGAAG 556
||||||| ||||| ||||||||||||||| ||||| | || |||| |||||||||||||
Sbjct 503 CCAAAAAGAAAACTCTTAATGATGAAATCGTGAGCCTATCGTCTTGTAGAAGAGCTGAAG 562
Query 557 AGAAGAAGAGTGATGATGAAGAGGACAAAGACGGCGACGATAAGAGAGTAGAAGATAGTT 616
|||||||| |||||||||||||||||||||| |||| |||||||| ||||| |||||||
Sbjct 563 AGAAGAAGTGTGATGATGAAGAGGACAAAGAGGGCGTTGATAAGAGTGTAGATGATAGTT 622
Query 617 TGAGAACAAAAGAAGCCACCATGTCAAAG----G------C------G---TCAAAG-AA 656
|||| ||| ||||||| || ||||||||| | | | || || ||
Sbjct 623 TGAGTACAGAAGAAGCTACGATGTCAAAGTTTTGCTTCTTCTGTGTTGATTTCTTAGCAA 682
Query 657 ATTTCTC-TGGTTGAACCAGCAGGTGCTaga-agaagaagtgcagaagaatatggcaaca 714
|||| || | ||||| ||||||||| |||| | || || |||||||||||||||||||
Sbjct 683 ATTTATCTTCCTTGAATCAGCAGGTGTTAGACA-AAAAACAGCAGAAGAATATGGCAACA 741
Query 715 aagagaagaagtgaagaaACAAAAACGTGTAGCACAAGTAACAAGAAGAATAAAAACGAA 774
|||||||||||||| || || ||||||||||||||||||||||||||||||||||||| |
Sbjct 742 AAGAGAAGAAGTGACGAGACGAAAACGTGTAGCACAAGTAACAAGAAGAATAAAAACGTA 801
Query 775 GTGGTGTCTCCTAGAAGATTAGGAGCAGAAACATGGCTGTCTCTTCCATACCCATATGAT 834
||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||
Sbjct 802 TTGGTGTCTCCTAGAAGATTAGAAGCAGAAACATGGCTGTCTCTTCCATACCCATATCAT 861
Query 835 CATTATCCAATAAGATATCAGATTATTCAGAGTTCAAGTCAGATGCAAAATTCCAGGATT 894
||||||||||||| |||||||||||| |||||||| | ||||||||| ||||| |||||
Sbjct 862 CATTATCCAATAAAATATCAGATTATGCAGAGTTCGATTCAGATGCAGCATTCCGGGATT 921
Query 895 GGAACAGAGCCTTTAGTTACATTTCTAGGTCAAAACCGTTTAAACCAACCCATTGGAGGT 954
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 922 GGAACAGAGCCTTTAGTTACATTTGTAGGTCAAAACCGTTTAAACCAACCCATTGGAGGT 981
Query 955 ATAGTTGGTCTCAGTGAGTTTCCTCAAGTTATTGAGGAGCATTGTTCTCCTCCCAATGTA 1014
|| |||||||| ||||||||||| ||||||||| |||||| || ||||| ||| |||| |
Sbjct 982 ATTGTTGGTCTTAGTGAGTTTCCCCAAGTTATTCAGGAGCTTTATTCTCTTCCTAATGCA 1041
Query 1015 CCACCACTTCCCAACCTCAATCTCCAAACACACCCGCAGCCTCACCTTGGTGGTAGAGTT 1074
|| ||||||||||||||||||||||||| |||||| |||||||| || ||||||||||||
Sbjct 1042 CCGCCACTTCCCAACCTCAATCTCCAAATACACCCACAGCCTCATCTCGGTGGTAGAGTT 1101
Query 1075 CGAAAGGAGCAGCCTTGA 1092
||||||||||||||||||
Sbjct 1102 CGAAAGGAGCAGCCTTGA 1119
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53513780970
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5