BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494341
Length=793
Score E
Sequences producing significant alignments: (Bits) Value
AT5G46300.1 | Symbols: | unknown protein; Has 1807 Blast hits ... 1000 0.0
> AT5G46300.1 | Symbols: | unknown protein; Has 1807 Blast hits
to 1807 proteins in 277 species: Archae - 0; Bacteria - 0;
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other
Eukaryotes - 339 (source: NCBI BLink). | chr5:18783610-18784786
FORWARD LENGTH=850
Length=850
Score = 1000 bits (541), Expect = 0.0
Identities = 712/791 (90%), Gaps = 26/791 (3%)
Strand=Plus/Plus
Query 1 AGACATAAAAGTTTCCTCTC-T-TGTCTTCTGAATTCTAACAAGAAATCAAGAAATGGAT 58
|||||||||||||||| ||| | |||||||| |||| || |||||||||||||||||||
Sbjct 1 AGACATAAAAGTTTCCACTCTTGTGTCTTCTTCATTCCAAGAAGAAATCAAGAAATGGAT 60
Query 59 CATGGAGAAATGAGCACCAAGGAAACTACGAATGTGAAGCTTATACCCGGGTACGAAAAT 118
||||||||||||||||| ||||||||||| | | ||||||||||||||||||||||||||
Sbjct 61 CATGGAGAAATGAGCACTAAGGAAACTACCACTTTGAAGCTTATACCCGGGTACGAAAAT 120
Query 119 GTGATGGAGCTCGTGCAAAGAAGAGAAGAGATGAAGGCTGTCGAGAAGAGGATGAAAAAT 178
||||||||||||| |||||||||| ||||| ||||||||||||||||||||||| |||||
Sbjct 121 GTGATGGAGCTCGAGCAAAGAAGACAAGAGCTGAAGGCTGTCGAGAAGAGGATGGAAAAT 180
Query 179 TTTATTGGAGaaaaaaaGATTGACGATCTAAACTTGAGAGAATTAATTGAGTTCGAGAAA 238
|||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct 181 GTTATTGGAGAAAAAGAGATTGACGATCTAAACTTGACAGAATTAATTGAGTTCGAGAAG 240
Query 239 AAGCTTGAAGCTA---AACAG-C--C---T-AAGAAGATGGAAAAGATTTGTTTGAAAGA 288
|||||||||| || || || | | | |||||| ||||||||||| || ||||||
Sbjct 241 AAGCTTGAAGATATCCAA-AGTCTACAGTTGAAGAAGTTGGAAAAGATTCCTTGGAAAGA 299
Query 289 CATGACAGAGGAAACCAAAGATCTTATAATTCTGAAAGAATTTGTAAACTTTAAGATTGG 348
||||| | || | ||||||||||| || ||||||| |||| ||| || |||||||||||
Sbjct 300 CATGATACAGCCAGCCAAAGATCTTGTAGTTCTGAACGAATATGTCAAGTTTAAGATTGG 359
Query 349 AGAAATGCAGACTAAGATTTCCAGT-CCTCAAGACGACGAATTTGATATTATAATGGAAG 407
|||||||||| ||| |||||||| | |||||| |||||||||||||||||| ||||||||
Sbjct 360 AGAAATGCAGGCTAGGATTTCCA-TGCCTCAAAACGACGAATTTGATATTAAAATGGAAG 418
Query 408 TAGGAAAAAAGGAAGATGTGAAGGGTTTGAAAATGAGGATGAAAGTGTTCATTGGAGAAA 467
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 TAGGAAAAAAGGAAGATTTGAAGGGTTTGAAAATGAGGATGAAAGTGTTCATTGGAGAAA 478
Query 468 AGGAGTTTGAAGACATACACTTGGAGGAATTGATTGAGTTCAGTAGAAAGCTTGAAGCTC 527
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 479 AGGAGTCTGAAGACATACACTTGGAGGAATTGATTGAGTTCAGTAAAAAGCTTGAAGCTC 538
Query 528 TTTACCCAAAGAGCGTGAAAGATGTGCATTTGGACGACATGAAAGGAGAAATTAAAGATA 587
|| ||||||||||||||| || |||||||||||||||| || ||||||||||||||
Sbjct 539 TTCACCCAAAGAGCGTGA----TG--CATTTGGACGACATGACAGAAGAAATTAAAGATA 592
Query 588 TAATCATTATGAAAGAAATTGTAAAGAAAATGATCGCGAAGAGGGATCCTACCTCGTCTA 647
|| ||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct 593 TATTCATTATGAAAGAAATTGTGAAGAAAATGATCGCGAAGAGGGATCCTAACTCGTCTA 652
Query 648 AAACGACGATCATCGACGA-TTATTTTTAATTAGAAATTAGTAACATATAAATTCATTAT 706
|||||| ||||||| | || ||||||||||||||||||||||||||||||||||||||||
Sbjct 653 AAACGATGATCATCCA-GAATTATTTTTAATTAGAAATTAGTAACATATAAATTCATTAT 711
Query 707 CTTGGATCATATATGATCACTTTACCGCTTGTTTCTCTC-TTCAAAATATTTACAGAATA 765
| ||||||||||||||||||||| |||||||||||| | || | | |||||||||||||
Sbjct 712 CATGGATCATATATGATCACTTTGTCGCTTGTTTCTCCCATT-ACA-TATTTACAGAATA 769
Query 766 ATTTGGGATTA 776
|||||||||||
Sbjct 770 ATTTGGGATTA 780
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38579824896
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5