BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg494342

Length=302
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G46295.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   401    2e-111


> AT5G46295.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT1G06475.1); 
Has 30201 Blast hits to 17322 proteins in 780 species: Archae 
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants 
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI 
BLink). | chr5:18779796-18780205 REVERSE LENGTH=410
Length=410

 Score =  401 bits (217),  Expect = 2e-111
 Identities = 259/279 (93%), Gaps = 4/279 (1%)
 Strand=Plus/Plus

Query  27   TACATTTCGATTTTGGAAGCAGCTCAAAAATTGTAAGAAGATGATGAGAAAAGGGAAGTT  86
            ||||||| | |||| |||||||||| |||||| | ||||||||||||||||||||||| |
Sbjct  48   TACATTTTGGTTTTTGAAGCAGCTC-AAAATTTTGAGAAGATGATGAGAAAAGGGAAGCT  106

Query  87   TTCTTTATGGAAGACGACGAAAGAAAGGACGAGATTGAAATTTTTGGGACTTGGA-G-GG  144
            |||  ||||||||||||| |||||||||||||||||||||||||||||||||||| | ||
Sbjct  107  TTCGATATGGAAGACGACTAAAGAAAGGACGAGATTGAAATTTTTGGGACTTGGAGGAGG  166

Query  145  G-TAAAGTGGAAGAGATTGAATCTGAAGATGTCTTTTTTGGAAACTTTGAGATACAGAAT  203
            | ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct  167  GCTAAAGTGGAAGAGATTGAATCTGAAGATGACGTTTTTGGAAACTTTGAGATACAGAAT  226

Query  204  CATGTCTGTCATCGAAGCTATGGTTTTGGTATCTAAGCTTGCTTTCTTCTTCCTCTGTTG  263
            ||||||| ||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct  227  CATGTCTATCATCGAGGCTATGGTTTTGGTATCCAAGCTTGCTTTCTTCTTCCTCTGTTG  286

Query  264  TGGTTGTAAATTCTAACAAAAGTTAGttttttttttttt  302
            ||||||||||||||||||||||||||||||  |||||||
Sbjct  287  TGGTTGTAAATTCTAACAAAAGTTAGTTTTGATTTTTTT  325



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13974434222


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5