BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494344
Length=1817
Score E
Sequences producing significant alignments: (Bits) Value
AT5G46290.3 | Symbols: KASI | 3-ketoacyl-acyl carrier protein s... 2287 0.0
> AT5G46290.3 | Symbols: KASI | 3-ketoacyl-acyl carrier protein
synthase I | chr5:18774086-18776742 REVERSE LENGTH=1936
Length=1936
Score = 2287 bits (1238), Expect = 0.0
Identities = 1338/1385 (97%), Gaps = 12/1385 (1%)
Strand=Plus/Plus
Query 1 TTTCGCAAAACACACATCACACACCATTTTCACAACATCGTACTTATCGCCTT-C-CTCT 58
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 21 TTTCGCAAAACACACATCACACACCATTTTCACAACATCGTACTTATCGCCTTCCTCTCT 80
Query 59 CTCTCAAT--CTCAATCTCAATTTCTGGATCCACCATGCAAGCTCTTCAGTCTTCATCTC 116
|||||||| ||| |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 81 CTCTCAATACCTC--TCTCAATTTCTGGATCCACCATGCAAGCTCTTCAATCTTCATCTC 138
Query 117 TCCGTGCTTCTCCACCAAACCCACTTCGCTTACCATCAAATCGTCAATCACATCAGATAA 176
||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 139 TCCGTGCTTCTCCTCCAAACCCACTTCGCTTACCATCAAATCGTCAATCACATCAGCTAA 198
Query 177 TCACCACCAATGCGAGACCTTTGAGAAGAC-AC--CGCTCCTTCATCTCCGCATCAGCAT 233
| |||||||||||||||||| |||||| || || ||||||||||||||||||||||
Sbjct 199 T---TACCAATGCGAGACCTTTGCGAAGACAACAACGTTCCTTCATCTCCGCATCAGCAT 255
Query 234 CCACTGTTTCCGCTCCTAAACGCGAAACAGATCCGAAGAAACGAGTTGTCATTACTGGTA 293
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 256 CCACTGTCTCCGCTCCTAAACGCGAAACAGATCCGAAGAAACGAGTTGTCATTACTGGTA 315
Query 294 TGGGTCTCGTCTCTGTGTTTGGTAACGATGTTGATGCTTACTACGACAAACTCTTGTCTG 353
|||||||||||||||||||||||||||||||||||||||||||||| ||| | |||||||
Sbjct 316 TGGGTCTCGTCTCTGTGTTTGGTAACGATGTTGATGCTTACTACGAGAAATTGTTGTCTG 375
Query 354 GTGAGAGTGGAATCAGTTTGATTGATCGTTTCGATGCTTCCAAGTTCCCTACTCGATTCG 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 376 GTGAGAGTGGAATCAGTTTGATTGATCGTTTCGATGCTTCCAAGTTCCCTACTCGATTCG 435
Query 414 GTGGTCAGATCCGTGGCTTTAGCTCTGAAGGTTATATTGATGGCAAAAATGAGCGTAGGC 473
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 436 GTGGTCAGATCCGTGGGTTTAGCTCTGAAGGTTATATTGATGGCAAGAATGAGCGTAGGC 495
Query 474 TTGATGATTGTTTGAAGTATTGCATTGTTGCTGGTAAAAAAGCTCTTGAAAGTGCCAATC 533
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 496 TTGATGATTGTTTGAAATATTGCATTGTTGCTGGTAAAAAAGCTCTTGAAAGTGCCAATC 555
Query 534 TTGGTGGTGATAAACTTAACACGATTGATAAGAGGAAAGCTGGAGTACTAGTTGGGACTG 593
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 556 TTGGTGGTGATAAGCTTAACACGATTGATAAGAGGAAAGCTGGAGTACTAGTTGGGACTG 615
Query 594 GAATGGGAGGTTTAACTGTGTTTTCAGAAGGAGTTCAGAATTTGATTGAGAAGGGTCATA 653
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 616 GAATGGGAGGTTTAACTGTGTTTTCAGAAGGTGTTCAGAATTTGATTGAGAAGGGTCATA 675
Query 654 GGAGGATTAGTCCATTTTTTATACCTTATGCTATAACAAACATGGGTTCTGCTTTGTTGG 713
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 676 GGAGGATTAGTCCATTTTTTATACCTTATGCTATAACAAATATGGGTTCTGCTTTGTTGG 735
Query 714 CGATTGATCTTGGTCTTATGGGTCCTAACTACTCGATTTCTACTGCTTGTGCTACTTCGA 773
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 736 CGATTGATCTTGGTCTTATGGGTCCTAACTATTCGATTTCAACTGCTTGTGCTACTTCGA 795
Query 774 ATTACTGTTTTTACGCTGCTGCGAACCACATTCGTCGTGGTGAAGCTGATATGATGATTG 833
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 796 ATTACTGCTTTTACGCTGCTGCGAATCACATTCGTCGTGGTGAAGCTGATATGATGATTG 855
Query 834 CTGGTGGGACTGAGGCTGCTATTATTCCTATTGGGTTGGGAGGTTTTGTTGCTTGTAGGG 893
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 856 CTGGTGGGACTGAGGCTGCTATTATTCCTATTGGGTTGGGAGGTTTTGTTGCTTGTAGGG 915
Query 894 CATTGTCTCAGAGGAATGATGACCCTCAAACTGCTTCGAGGCCGTGGGATAAAGCAAGAG 953
||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 916 CATTGTCCCAGAGAAATGATGACCCTCAAACTGCTTCCAGGCCGTGGGATAAAGCAAGAG 975
Query 954 ATGGCTTTGTTATGGGCGAAGGAGCTGGTGTTCTGGTGATGGAAAGTTTGGAACATGCGA 1013
|||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 976 ATGGGTTTGTTATGGGTGAAGGAGCTGGTGTTCTGGTGATGGAAAGCTTGGAACATGCAA 1035
Query 1014 TGAAACGTGGTGCTCCAATTGTAGCAGAATATCTTGGAGGTGCTGTTAATTGTGATGCTC 1073
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1036 TGAAACGTGGTGCTCCAATTGTAGCAGAATATCTTGGAGGTGCTGTTAATTGTGATGCTC 1095
Query 1074 ACCATATGACTGATCCAAGAGCTGATGGGCTTGGTGTCTCTTCATGCATTGAGAGATGCC 1133
|||||||||||||||||||||||||||| ||||| || |||||||||||||| |||||||
Sbjct 1096 ACCATATGACTGATCCAAGAGCTGATGGTCTTGGGGTTTCTTCATGCATTGAAAGATGCC 1155
Query 1134 TTGAAGATGCTGGTGTATCACCTGAGGAGGTAAATTACATCAATGCACATGCAACATCCA 1193
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1156 TGGAAGATGCTGGTGTATCACCTGAGGAGGTAAATTACATCAATGCACATGCAACTTCCA 1215
Query 1194 CTCTTGCTGGTGATCTTGCTGAGATTAATGCCATTAAAAAGGTATTCAAGAGCACTTCAG 1253
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1216 CTCTTGCTGGTGATCTTGCTGAGATTAATGCCATTAAAAAGGTATTCAAGAGCACTTCAG 1275
Query 1254 GGATCAAAATCAATGCCACCAAGTCTATGATAGGTCACTGCCTCGGTGCAGCTGGAGGTC 1313
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1276 GGATCAAAATCAACGCCACCAAGTCTATGATAGGTCACTGCCTCGGTGCAGCTGGAGGTC 1335
Query 1314 TAGAAGCCATCGCCACCGTGAAGGCTATTAACACTGGATGGCTGCATCCTTCCATCAACC 1373
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1336 TAGAAGCCATCGCCACCGTGAAGGCTATCAACACTGGATGGCTGCATCCTTCCATCAACC 1395
Query 1374 AATTT 1378
|||||
Sbjct 1396 AATTT 1400
Score = 645 bits (349), Expect = 0.0
Identities = 414/442 (94%), Gaps = 18/442 (4%)
Strand=Plus/Plus
Query 1379 AACCCAGAACAAGCTGTGGACTTTGACACGGTCCCAAACGAGAAGAAGCAGCACGAAGTT 1438
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 1449 AACCCAGAACAAGCTGTGGACTTTGACACGGTCCCAAACGAGAAGAAGCAACACGAGGTT 1508
Query 1439 GATGTTGCCATATCAAACTCGTTCGGGTTCGGTGGACACAACTCAGTCGTCGCCTTCTCT 1498
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 1509 GATGTTGCCATATCAAACTCGTTCGGGTTCGGTGGACACAACTCGGTAGTCGCCTTCTCT 1568
Query 1499 GCCTTCAAACCCTGATTTCTTCATACCTTTTAGATTCTCTGCTCC-ATCCGTTAC-ATCA 1556
|||||||||||||||||||||||||||||||||||||||||| || ||| ||||| ||||
Sbjct 1569 GCCTTCAAACCCTGATTTCTTCATACCTTTTAGATTCTCTGC-CCTATCGGTTACTATCA 1627
Query 1557 TC--C-ATCACCACCACTTGCAGCTTCTTGGTTTCACAAGTTTAAGCTCTTCCTCTGGCC 1613
|| | ||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 1628 TCATCCATCACCACCACTTGCAGCTTCTTGGTT-CACAAGTTGGAGCTCTTCCTCTGGCC 1686
Query 1614 TTTTGCGGTTCTTATTTTTCCATTCCCCGTTTTGTTACTGTTGCTGAGATTTCAGATTTT 1673
||||||||||||| | | ||||||||||| |||| |||||||||||||||||||||
Sbjct 1687 TTTTGCGGTTCTT-T----C-ATTCCCCGTTTC-TTACGGTTGCTGAGATTTCAGATTTT 1739
Query 1674 GTTTGTTCTCTCTCTTGTCTGCGGAATGTT-TGTATCTTAGTTCGTTCCATATTTGCGTA 1732
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1740 GTTTGTTCTCTCTCTTGTCTGCGGAATGTTGTGTATCTTAGTTCGTTCCATATTTGCGTA 1799
Query 1733 ATTTATAAAA-CAGAAAACTGAGAGAATCTTGTAGTAACGGTGTTAGTGTCAGAATAATC 1791
|||||||||| |||||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct 1800 ATTTATAAAAACAGAAA-CTGAGAGAATCTTGTAGTAACGGTGTTATTGTCAGAATAATC 1858
Query 1792 CAAATTAGGGGATTCTCATCTT 1813
||| ||||||||||||||||||
Sbjct 1859 CAA-TTAGGGGATTCTCATCTT 1879
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89909176095
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5