BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494351
Length=559
Score E
Sequences producing significant alignments: (Bits) Value
AT5G46230.1 | Symbols: | Protein of unknown function, DUF538 |... 798 0.0
> AT5G46230.1 | Symbols: | Protein of unknown function, DUF538
| chr5:18742440-18743045 REVERSE LENGTH=606
Length=606
Score = 798 bits (432), Expect = 0.0
Identities = 522/563 (93%), Gaps = 15/563 (3%)
Strand=Plus/Plus
Query 1 ACCACAAATCTCATCAAAATGTCGTCTCTAGAAACGAAATCAGATCAAAGAGAAGGAGCA 60
||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct 4 ACCACAAATCTCATCGAAATGTCGTCTCAAGAAACGAAATCAGATCAAAGAGAAGGAGCA 63
Query 61 GAGATCTGCAATGGCGAATCAAACTGCAAACAAAAAGCCAAAGAGATCTTATCAACCATG 120
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 64 GAGATCTGCAATGGCGAATCAAACTGCAAACAGAAAGCCAAAGAGATTTTATCAACCATG 123
Query 121 AATCTACCCAAAGGACTTCTTCCAT-TAGACAACATGACAGAGATCGGTCACAACAAATC 179
|||||||||||||| |||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 124 AATCTACCCAAAGGTCTTCTTCC-TCTAGACAACATGACAGAGATCGGTCACAACAAATC 182
Query 180 AACCGGTTATGTCTGGATCAAGATCAAGAACAAGGTTCAACATCGGTTCAAAGCCATCGG 239
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 183 AACCGGTTATGTCTGGATCAAGATCAAGAACAAGGTTCAACATCGGTTTAAAGCCATTGG 242
Query 240 AAAAAACGTATCGTACGATTCAGAGGTTACTGCGATCGTTGAGAATCGTCGGATGCGACA 299
| ||||||||| |||||||| ||||||||||||||| ||||||||||||||||| | ||
Sbjct 243 ACGAAACGTATCTTACGATTCGGAGGTTACTGCGATCCTTGAGAATCGTCGGATGAGTCA 302
Query 300 GCTTACTGGGA-TCAAAAGCAAAGAGATTTTGATTTGGGTTACGATCTCTGAGATCTTTG 358
||| || |||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 303 GCTCAC-GGGAATCAAGAGCAAAGAGATTTTGATTTGGGTTACGATCTCTGAGATCTTTG 361
Query 359 TTAATGATCAAGATCCGACT-ATAATCACTTTTGCTAATCCTACGGGTCTGTCACGTACT 417
||||| |||||||||||||| | |||||||||||||||||||||||| || |||||||||
Sbjct 362 TTAATCATCAAGATCCGACTCA-AATCACTTTTGCTAATCCTACGGGACTATCACGTACT 420
Query 418 TTCCCCGTCACTGCTTTTGAAGAAGACCAGTGATTTTGATTTTGTCAACGCTCATCATTA 477
||||||||||||||||||||||||||| | ||||| |||| ||||||||||| ||| |
Sbjct 421 TTCCCCGTCACTGCTTTTGAAGAAGACGAATGATTC--ATTT-GTCAACGCTCACCATCA 477
Query 478 TGATACTTTGCTTAGCTAAATTATCTTTCTTTTCtttttttCTTATAATTCCTTTTGTTT 537
|||||||||||||||||||||||||||| | || |||| |||||||||||||||||||
Sbjct 478 TGATACTTTGCTTAGCTAAATTATCTTT-TGTT-TTTTC--CTTATAATTCCTTTTGTTT 533
Query 538 AGCTAAGTTCT-TTCTTCAACAT 559
||||||||||| || ||||||||
Sbjct 534 AGCTAAGTTCTATT-TTCAACAT 555
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26825034498
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5