BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494352
Length=1502
Score E
Sequences producing significant alignments: (Bits) Value
AT5G46220.1 | Symbols: | Protein of unknown function (DUF616) ... 2311 0.0
> AT5G46220.1 | Symbols: | Protein of unknown function (DUF616)
| chr5:18738749-18742011 FORWARD LENGTH=1514
Length=1514
Score = 2311 bits (1251), Expect = 0.0
Identities = 1426/1510 (94%), Gaps = 14/1510 (1%)
Strand=Plus/Plus
Query 1 TCTTCTTCTTCATCTTCAACACCAATCACTCTCAAC-AAAATGAATAATAAATAAACCAT 59
|||||||| || |||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 1 TCTTCTTCATCCTCTTCAACACCAATCACTCTCACCAAAAATGAATAATAAATAAACCAT 60
Query 60 AAATCTCTCTTTT-TCCGATGGGAAAATTCATCACAACCACACTATCTCCACCGCTCTAT 118
||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AAATCTCTCTTTTATCCAATGGGAAAATTCATCACAACCACACTATCTCCACCGCTCTAT 120
Query 119 GCTCGATCAAAactcctctgtttttctcttctctacttattcactac--tctttctctat 176
|| |||||||| || ||||||||||| |||||||||||||||| ||| || || ||| |
Sbjct 121 GCCCGATCAAAGCTTCTCTGTTTTTCACTTCTCTACTTATTCAGTACAATC-TT-TCTGT 178
Query 177 tcctctatgtatctctctcAAGAAACCAATGCGTCTTTCGATATTCGCCATTTGATCCGA 236
||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 179 TCCTCTACGTATCTCTCTCAAGAAACCAATGCATCTTTCGATATTCGCCATTTGATCCGA 238
Query 237 TTCAACCAAAACTTTTCTCTTATCCTTCTTCTTATGGTGAACACAAATATGCTCTTCCCA 296
||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 239 TTCAAGCAAAACTTTTCTCTTATCCTTCTTCTTATGGTGAACATAAATATGCTCTTCCCA 298
Query 297 CTCATCGATCTTCTTGTTCTTCCCCTGTTTTCTTTTCAGATTATTGGACAGTGTTGAAGG 356
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct 299 CTCATCGATCTTCTTGTTCTTCCCCTATTTTCTTTTCAGATTATTGGACAGTGTTGAAAG 358
Query 357 AGATACAGAGTATCTTGAGTGATTCATCATCACAA-GAAAATTTGAGATACATTAATGGA 415
||||||||||||||||||| | ||||||| || || |||||||||||||| || ||||||
Sbjct 359 AGATACAGAGTATCTTGAGCGGTTCATCACCA-AAGGAAAATTTGAGATATATCAATGGA 417
Query 416 AAAAGTGAGAGTTTCGGTGGTAATTTTAGTACTCAGAAGAGATTTTCTTATTTCAACCAT 475
|||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||| |||
Sbjct 418 AAAAGTGAAAGTTTCGGTGGAAATTTCAGTACTCAGAAGAGATTTTCTTATTTCAATCAT 477
Query 476 TCGAACATTGACATCGAAGTTCCATGCGGCTTCTTCAGAGATTTTCCGGTCAGCAATTCC 535
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 TCGAACATTGACGTCGAAGTTCCATGCGGCTTCTTCAGAGATTTTCCGGTCAGCAATTCC 537
Query 536 GATAGAGTTGAGATGGAGAAATGTGGACTAGTAGTTGCATCAGCTATTTTTAACGACCAT 595
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 538 GATAGAGTTGAGATGGAGAAATGTGGACTAGTAGTTGCATCAGCCATTTTTAACGACCAT 597
Query 596 GACAAGATTAGACAACCAGTGGGACTCGGAGTTAAAACCTTAGAAACCGTTTGCTTCTAC 655
|||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 598 GACAAGATAAGACAACCAGTGGGACTTGGAGTTAAGACCTTAGAAACCGTTTGCTTCTAC 657
Query 656 ATGTTCATCGACGATAAAACCCAAAATTCTCTCTTTCACCACAATGTCATCCTCAAAAAC 715
||||||||||||||||||||| |||||||||||| ||||||||||||||||| ||||||
Sbjct 658 ATGTTCATCGACGATAAAACCTTAAATTCTCTCTTCCACCACAATGTCATCCTGAAAAAC 717
Query 716 AATCCAAAAGATTATAGAGTCGGCGCATGGAGAGTCATCAAAATCTCAAAATCCGAAAAC 775
||||||| ||||||||||| || ||||||||| |||||||||| || |||||||||||
Sbjct 718 AATCCAAGTGATTATAGAGTTGGTGCATGGAGAATCATCAAAATTTCGAAATCCGAAAAT 777
Query 776 CTATACCTTAACCCGGCTATGAACGGGGTTATACCAAAGTATCTAATACATAGATTGTTT 835
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 778 CTATACCTTAATCCGGCTATGAACGGGGTTATACCAAAGTATCTAATTCATAGATTGTTT 837
Query 836 CCAAACTCAAAGTTTAGTATATGGGTTGATGCGAAAATTCAGCTCATGATCGATCCGCTA 895
|||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 838 CCAAACTCAAAGTTCAGTATATGGGTCGATGCGAAAATTCAGCTCATGATTGATCCGCTA 897
Query 896 CTTCTAATTCATTCAATGTTAGTAGTGCCTGAAG-CGGATATGGCGATATCTAAACATCC 954
|||||||||||||||||||||||||||||||||| || ||||||||||||| ||||||||
Sbjct 898 CTTCTAATTCATTCAATGTTAGTAGTGCCTGAAGTCG-ATATGGCGATATCGAAACATCC 956
Query 955 GTTTTTTGTAAATACAATGGAGGAAGCTATGGCTACCGCGAGGTGGAAGAAATGGGGCGA 1014
||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 957 GTTTTTTGTTAATACAATGGAGGAAGCTATGGCTACCGCGCGGTGGAAGAAATGGGGCGA 1016
Query 1015 TGTCGACGGGCTAAGGATTCAAATGGAGACTTATTGTGAGCATGGTTTGAAGCCTTGGAG 1074
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1017 TGTCGACGGGCTAAGGATTCAAATGGAGACTTATTGTGAGCATGGTTTGAAGCCTTGGAG 1076
Query 1075 TTCTCA-TAAGTTGCCATATCCCACAGATGTACCAGATACCGCGTTGATATTGCGAAGAC 1133
||| | ||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1077 CTCT-AGTAAGTTGCCATATCCCACAGATGTACCAGATACCGCGTTGATACTGCGAAGAC 1135
Query 1134 ACGGAATCAGAAGCAACCTATTCTCGTGCTTCATGTTCAACGAGTTAGAATCGTTTAACC 1193
|||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||
Sbjct 1136 ACGGAATCAGAAGCAACCTATTCTCGTGTTTCATGTTCAACGAGTTAGAAGCGTTTAACC 1195
Query 1194 CGCGAGACCAATTAGCATTTGCGTTTGTGAGAGATCACATAAACCCTAAGGTGAAAATGA 1253
||||||||||||| || |||||||||||||| |||||||||||||| |||||||||||||
Sbjct 1196 CGCGAGACCAATTGGCGTTTGCGTTTGTGAGGGATCACATAAACCCGAAGGTGAAAATGA 1255
Query 1254 ACATGTTTGAAGTTGAAGTGTTTGAGCAAGTAGTTGTTGAATACAGACACAATCTCAAGA 1313
||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1256 ACATGTTTGAAGTCGAAGTGTTCGAGCAAGTAGTTGTTGAATACAGACACAATCTCAAGA 1315
Query 1314 AGATTGAGA-CATCTACGTACGAGgaacaagaagaagaacagaaacaagaatcgttgagg 1372
||||||||| | |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1316 AGATTGAGAGC-TCTACGTATGAGGAACAAGAAGAAGAACAGAAACAAGAATCGTTGAGG 1374
Query 1373 aaaataaaaaagagaagaaaaTGGTTAGATCATGAATCTTGGTCTCTCAATAGTAGTAGC 1432
| |||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 1375 ACAATACAAAAGAGAAGAAAATGGCTAGATCATGAATCTTGGTCTCTCAATCGTAGTAGC 1434
Query 1433 TGTAAGAATTATCTCACGGATATGTGGGGCTGAATCTCACCATTGAtttttttCTTTTCT 1492
||||||||||||||||||||||||||||||| || |||| ||||||||||||||||| |
Sbjct 1435 TGTAAGAATTATCTCACGGATATGTGGGGCTAAAACTCATAATTGATTTTTTTCTTTTAT 1494
Query 1493 TATCTTTATA 1502
||||||||||
Sbjct 1495 TATCTTTATA 1504
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74096004420
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5