BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494355
Length=2363
Score E
Sequences producing significant alignments: (Bits) Value
AT5G46190.1 | Symbols: | RNA-binding KH domain-containing prot... 3552 0.0
AT4G18375.2 | Symbols: | RNA-binding KH domain-containing prot... 673 0.0
> AT5G46190.1 | Symbols: | RNA-binding KH domain-containing protein
| chr5:18723116-18726200 REVERSE LENGTH=2414
Length=2414
Score = 3552 bits (1923), Expect = 0.0
Identities = 2170/2290 (95%), Gaps = 14/2290 (1%)
Strand=Plus/Plus
Query 82 CTTGGGTTTTGTAA-TTCCATAACAGTCAACAATGGTTGAGCGTGGGAAGAGGACTCACA 140
||| |||| ||||| || || ||||| |||||||||||||||||||||||||||||||||
Sbjct 130 CTT-GGTTGTGTAATTTGCAAAACAGACAACAATGGTTGAGCGTGGGAAGAGGACTCACA 188
Query 141 ATCGTTTTAGAGACAATAACAATGACAACAATAGGAACCAAAAGAGAAGACTTTCTTACG 200
||||||| |||||||| |||||||||||||| |||| |||| |||||||||||||||||
Sbjct 189 ATCGTTTCAGAGACAACAACAATGACAACAACCGGAATCAAAGGAGAAGACTTTCTTACG 248
Query 201 AAACCGAAG---AAAAGACCGATAACAAAGACGATCTTGTTGTTGCTTACAGAATCTTAT 257
|| |||||| |||||| |||||||||||||||||| ||||||| ||||||||||||||
Sbjct 249 AATCCGAAGAAAAAAAGATCGATAACAAAGACGATCTCGTTGTTGTTTACAGAATCTTAT 308
Query 258 GCCCTAGTGGAGTCATGGGAAGTGTTATAGGCAAAAGTGGCAAAGTTATTAACTTGATTA 317
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 309 GCCCAAGTGGTGTCATGGGAAGTGTTATAGGCAAAAGTGGCAAAGTTATTAACTTGATTA 368
Query 318 GGCAAGAAACTAGAGCTAGAATCAAAGTTGTTGATCCTTTTCCAGGTTGTAGCGAAAGAG 377
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 369 GGCAAGAAACTAGAGCTAGGATCAAAGTTGTTGATCCTTTTCCAGGTTGTAGCGAAAGAG 428
Query 378 TCATAACGATCTTTTGCTCGGTTACGGAGAAGAAAGACATTGTCGACATTGAGAATAGCG 437
||||||||||||||||||||||| ||||||||||||||||||| ||||||||| |||| |
Sbjct 429 TCATAACGATCTTTTGCTCGGTTTCGGAGAAGAAAGACATTGTTGACATTGAGTATAGTG 488
Query 438 AATTGAATTACTCAATTCCTTTGTGTTCTGCTCAAGATGCTCTTCTTAAAGTCCATGATG 497
||||| ||||||| ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 489 AATTGGATTACTCTGTTCCTTTGTGTTCTGCTCAAGCTGCTCTTCTTAAAGTCCATGATG 548
Query 498 CTATTGTGGCTTCTTTAGCTACTGCTGCTGAGAACACTAAGATTGATAGAGATGA-TATT 556
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 549 CTATTGTGGCTTCTTTAGCTACTGCTGCTGAGAACACTAAGATTGATAGAGATGACT-TT 607
Query 557 AGAGAATGTCGCCTTTTAGTTCCGTCTAGTCAATGTTCTAATGTCATTGGTAAATCCGGT 616
||||||||||| |||||||||||||||||||| ||||||| ||||||||||||||| |||
Sbjct 608 AGAGAATGTCGTCTTTTAGTTCCGTCTAGTCAGTGTTCTATTGTCATTGGTAAATCTGGT 667
Query 617 TCTATTATTAAGAAGATTAGGA-GTAGAACTAGAGCTAACGTTAAGGTTGTCTCTAAAGA 675
|| ||||||||||| |||| || |||||||||||||||||||||||||||||||||||||
Sbjct 668 TCGATTATTAAGAACATTA-GAGGTAGAACTAGAGCTAACGTTAAGGTTGTCTCTAAAGA 726
Query 676 TGTTTCGGATCCTTCACACACTTGTGCTATGGATTTTGACAACATTGTTCTGATGTCCGG 735
|||||| |||||||| ||||||||||| ||||||||||||||||||||| |||| || ||
Sbjct 727 TGTTTCTGATCCTTCTCACACTTGTGCCATGGATTTTGACAACATTGTTATGATATCTGG 786
Query 736 TGAGTCTGAATCCGTGAAGAAGGCACTTTTCGCTGTTTCTGCAATCATGTACAAAGTCAG 795
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 787 TGAGACTGAATCCGTGAAGAAGGCACTTTTCGCTGTTTCTGCAATCATGTACAAAGTCAG 846
Query 796 TCCTCGAGAACAGATTCCTCTGGATACAACTGTCCAAGAAGTTCCCTCTAGTATTATAAT 855
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 847 TCCTCGAGAACAGATTCCTCTGGATACAACTGTCCAAGAAGTTCCCGCTAGTATTATAAT 906
Query 856 TCCGTCAGATCTATCTATCTATCCACAAGGCGGTTTATACCCAAATCAGGATCCTATTTT 915
||| || ||||| |||||||||||||||| |||||||||||||| ||||||| |||||||
Sbjct 907 TCCCTCTGATCTGTCTATCTATCCACAAGCCGGTTTATACCCAAGTCAGGATTCTATTTT 966
Query 916 CCAACATGGGGCCAATGTTTCATCGTTTATCGGTACACTACCTCAGGGTTATGGGGAAAA 975
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 967 CCAACATGGGGCTAATGTTTCATCGTTTATCGGTACACTACCTCAGGGTTATGGAGAAAA 1026
Query 976 CGCTGCAAATCCAATGCCGGTTTTTTCTGCTTCTGCTCTTCCTGTGGTTCATGGTTTTGG 1035
||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1027 TGCTGCAAATCCTGTGCCGGTTTTTTCTGCTTCTGCTCTTCCTGTTGTTCATGGTTTTGG 1086
Query 1036 TGGGTCTTCCAGATCAGAAAAGTTGGTTATAAAAGTTATTTGCTCTTCTTCCAAAATCGG 1095
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct 1087 TGGGTCTTCCAGATCAGAAAAGTTGGCTATAAAAGTTATTTGCTCTTCTTCCAAAATTGG 1146
Query 1096 CCGTGTTATTGGGAAAGGAGGATCAACCATTAAGGGAATAAGACAAGCAAGCGGGTCTCA 1155
|||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1147 TCGTGTTATCGGGAAAGGAGGATTAACCATTAAGGGAATAAGACAAGCAAGCGGGTCTCA 1206
Query 1156 TATCGAGGTTAATGACTCGAGGGCAAATCATGATGATGACTGTGTTATCACTGTCACTGC 1215
|||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1207 TATCGAAGTTAATGACTCGAGGACAAATCATGATGATGACTGTGTTATCACTGTCACTGC 1266
Query 1216 TACAGAGTCTCCTGATGATTTGAAGTCTATGGCGGTTGAAGCTGTTCTTCTACTTCAAGA 1275
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1267 TACAGAGTCTCCTGATGATTTGAAGTCTATGGCGGTTGAAGCTGTTCTTCTACTTCAAGA 1326
Query 1276 GAAAATTAATGATGAAGACGAGGAAAAAGTTAAAATGCAACTTCTTGTACCTTCTAAGGT 1335
|||||||||||||||||||||||| ||||||||||||||||| |||||| ||||||||||
Sbjct 1327 GAAAATTAATGATGAAGACGAGGACAAAGTTAAAATGCAACTCCTTGTATCTTCTAAGGT 1386
Query 1336 AATAGGATGCATTATAGGGAAAAGTGGCTCAATCATAAGTGAAATCAGGAAAAGGACAAA 1395
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1387 AATAGGATGCATTATAGGGAAAAGTGGCTCAATCATAAGTGAAATCAGGAAAAGGACAAA 1446
Query 1396 GGCCAATATTCACATCTCAAAAGGGAGTAATAAGCCTAAGTGTGCCGATCCCAATGATGA 1455
|||| ||||||| ||||| ||||| | ||||| |||||||||||| ||||||||||||||
Sbjct 1447 GGCCGATATTCATATCTCGAAAGGAAATAATACGCCTAAGTGTGCTGATCCCAATGATGA 1506
Query 1456 GCTCGTTGAGATATCGGGTGAAGTAAGCGATGTGAGAGATGCTCTTATTCAGATAGTTCT 1515
||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1507 GCTCGTTGAGATATCTGGTGAAGTAAGCAATGTGAGAGATGCTCTTATTCAGATAGTTCT 1566
Query 1516 GAGGCTTCGAGATGATGTATTAAGGGATAGAGAGATTGGTTCCAGGAATCAACCTCCTGC 1575
|||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct 1567 GAGGCTTCGAGATGATGTTTTAAGGGATAGAGAGACTGGTTCCAGGAATCAACCTCCTGC 1626
Query 1576 AAGATCTGAGAATAACAATTTCTTCTCTTCGGGTAGTAGTAATACTGGTCTTGCACTTCC 1635
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1627 AAGATCTGAGAATAACAATTTCTTCTCTTCAAGTAGTAGTAATACTGGTCTTGCACTTCC 1686
Query 1636 TTCA-TCTTTCATGTCTTCTGTTCCACAAGTTGCTTCTGTAGATTTCGATAGGAGACCAG 1694
| || |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 1687 T-CAATCTTTCATGTCTTCTGTTCCGCAAGTTGCTTCTGTAGATTTCAATAGGAGACCAG 1745
Query 1695 AAACTGGGAGCAGCATGAGCATGCTTCCTTCGAGCGGTGGACTCTATGGTTATGGAAGTT 1754
|||| ||||||||||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct 1746 AAACCGGGAGCAGCATGAGCATGCTTCCTTCGAGTGGTGGAATCTATGGTTATGGAAGTT 1805
Query 1755 TTCCGGTGGGCAATAACA-GTTATGGGTCCAAGTCTTCGTACTCATCCAATCTATATGGA 1813
||||||||||||||| || ||||||| ||||| || || |||||||||||||||||||||
Sbjct 1806 TTCCGGTGGGCAATA-CAAGTTATGGATCCAACTCCTCTTACTCATCCAATCTATATGGA 1864
Query 1814 GGATTGCCTCAATCTACTACTATGGAGGTTCGAATCCCAGCAAATGCAGTGGGTAAAGTT 1873
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1865 GGATTGCCTCAGTCTACTACTATGGAGGTTCGAATCCCAGCAAATGCAGTGGGTAAAGTT 1924
Query 1874 ATGGGCAGAGGAGGAGGCAACTTGGATAACATAAGAAGGATATCAGGAGCTATGATAGAA 1933
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 1925 ATGGGCAGAGGAGGAGGCAACTTGGACAACATAAGAAGGATATCAGGAGCCATGATAGAA 1984
Query 1934 ATTTCTGATTCCAAAAATTCCCATGGCGGTCGCATTGCTCTCATTTCCGGAACACCTGAA 1993
||||||||||||||||||||||||||||||||| |||||||||||||||| ||| |||||
Sbjct 1985 ATTTCTGATTCCAAAAATTCCCATGGCGGTCGCGTTGCTCTCATTTCCGGGACATCTGAA 2044
Query 1994 CAGAAGCGTACCGCAGAGAACTTGTTCCAAGCTTTTATCATGTCCACTTGAATAGTATGC 2053
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 2045 CAGAAGCGTACCGCAGAGAACTTGTTCCAAGCTTTTATCATGTCCACTTGAATAATTTGC 2104
Query 2054 TCTGCCCCGTAATCCTTTTCCATGGAAGTGTGTTCCATCTATCTAGCTCTCAGTGGATTT 2113
|||||||| |||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 2105 TCTGCCCCTTAATCCTTTTCCATGGAAGTGTGTTCCATCAATCTACCTCTCAGTGGATTT 2164
Query 2114 CTTTGATCGGGTTTCTCAGGCTTTCCTCCTTCCATCAAGCTCATGTTTAGATATGGTTGG 2173
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2165 CTTTGATCGGGTTTCTCAGGCTTTCCTCCTTCCATCAAGCTCATGTTTAGATATGGTTGC 2224
Query 2174 ATATCTCATCAAACTTTTCGGTATCTCCGTCTCGATTCGGTTACTTTTGGTTTCTCGTTC 2233
|| ||||||||||| |||||||||||| |||||| || ||||||||||||||||||| |
Sbjct 2225 ATCTCTCATCAAACATTTCGGTATCTCA-TCTCGACTCAGTTACTTTTGGTTTCTCGTGC 2283
Query 2234 TAGACATTTTATAGTCTTTCAGGATCATTCTTTTCCCCTTTCCCTGCGAGCTGTTCGTAC 2293
|||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct 2284 TAGACATTTTATAGTCTTTCAGGACCATTCTTTTCCCCTTTCCTTGCGAGCTGTTCGTAC 2343
Query 2294 AATAACTACTTATCTCCGTGCAATAAAACAAAATCGTTCTTATATCAATCAAACTTTGTT 2353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2344 TATAACTACTTATCTCCGTGCAATAAAACAAAATCGTTCTTATATCAATCAAACTTTGCT 2403
Query 2354 TATTCCCCAT 2363
||||| ||||
Sbjct 2404 TATTCTCCAT 2413
> AT4G18375.2 | Symbols: | RNA-binding KH domain-containing protein
| chr4:10152486-10155293 FORWARD LENGTH=2084
Length=2084
Score = 673 bits (364), Expect = 0.0
Identities = 1131/1479 (76%), Gaps = 142/1479 (10%)
Strand=Plus/Plus
Query 237 TTGTTGCTTACAGAATCTTATGCCCTAGTGGA-GTCATGGGAAGTGTTATAGGCAAAAGT 295
|||| | ||||||||||||||| |||| | || || | ||| |||||||||| ||||||
Sbjct 199 TTGTAGTTTACAGAATCTTATGTCCTA-TTGATGTTGTTGGAGGTGTTATAGGTAAAAGT 257
Query 296 GGCAAAGTTATTAACTTGATTAGGCAAGAA-ACTAGAG-CTAGAATCAAAGT-TGTTGAT 352
|| ||||| || ||| ||||||| | || || | || | || |||||||| | |||||
Sbjct 258 GGTAAAGTCATCAACGCCATTAGGC-ATAACACAAAAGCCAAG-ATCAAAGTAT-TTGAT 314
Query 353 CCTTTTCCA-GGTTGTAGCGAAAGAGTCATAACGATCTTTTGCTCGGTTACGGAGAAGA- 410
| || || ||||| ||| ||||||||||||| |||| |||||| |||| ||||| |
Sbjct 315 -CAGTTACATGGTTGCAGCCAAAGAGTCATAACAATCTATTGCTCTGTTAAAGAGAA-AC 372
Query 411 AAG-ACATTGTCGACATTGA-GAATAGCGAATTGAATTACTCAATTCCT-TTGTGTTCTG 467
||| | | ||| || | ||| |||| | || | | | ||| || |||| ||
Sbjct 373 AAGAAGA-AATCG-GTTTTACGAAGAGCG-A---AA--A--CGA-GCCTCTT-TGTTGTG 420
Query 468 CTCAAGATGCTCTTCTTAAAGTCCATGATGCTATTGTGGCTTCTTTAGCT-ACTGCTGCT 526
| ||||||||||||||||||||| ||||||| ||||| | | ||| | | || |
Sbjct 421 CACAAGATGCTCTTCTTAAAGTCTATGATGCAATTGTAG---C--TAG-TGA-TGAAG-A 472
Query 527 G-AGAACACTAAG----AT-T-GATAGAGATGAT-ATTAGAGAATGTCGCCTTTTAGTTC 578
| | ||||||||| || | |||||||||||| | || ||||| || ||||||||||
Sbjct 473 GAACAACACTAAGACTAATGTAGATAGAGATGATAACAAG-GAATGCCGTCTTTTAGTTC 531
Query 579 CGTCTAGTCAATGTTCTAATGTCATTGGTAAATCCGGTTCTATTATTAAGAAGATTAGGA 638
||| |||||||| ||||| | | |||||||| | ||| | ||||||| || || ||
Sbjct 532 CGTTTAGTCAATCTTCTAGTTTGATTGGTAAGGCTGGTGAGAACATTAAGAGGA-TAAGA 590
Query 639 -GTAGAACTAGAGCTAACGTTAAGGTTGTCTCTAAAGATGTTTCGGATCCTTCACACACT 697
||||||||||||||| ||||||||||| || ||||||||||||||||||||||| |
Sbjct 591 CGTAGAACTAGAGCTAGTGTTAAGGTTGTTTCGAAAGATGTTTCGGATCCTTCACATGTT 650
Query 698 TGTGCTATGGATTTTGACAACATTGTTCTGATGTCCGGTGAGTCTGAATCCGTGAAG-AA 756
||||| ||||| | |||||| | ||| |||| || |||||| |||||||||||||| ||
Sbjct 651 TGTGCCATGGAATATGACAATGTAGTTGTGATATCTGGTGAGCCTGAATCCGTGAAGCAA 710
Query 757 GGCACTTTTCGCTGTTTCTGCAATCATGTACAAAG-TCAGTCCTCGAGAACAGATTCCTC 815
|| ||||| ||||||||||||||||||||| ||| ||| |||||| ||| | |||||||
Sbjct 711 -GCGCTTTTTGCTGTTTCTGCAATCATGTAC-AAGATCAATCCTCGTGAAAATATTCCTC 768
Query 816 TGGATACAA-CTGTCCAAGAAGTTCC--C-TCTAGTATTATAATTCCGTCAGA----TCT 867
| ||| ||| | | |||||| ||||| | ||||| ||||| |||| ||||| |||
Sbjct 769 TAGATTCAACCAG-CCAAGATGTTCCAGCAGCTAGTGTTATAGTTCCATCAGATCTTTCT 827
Query 868 -A-TCTATCTATCCAC-AA-GGCGGTTTATACCCAAATCAGGATCCTATT-TTCCAACAT 922
| ||| ||||||| | || || | ||| ||| | ||||| |||| |||| || || ||
Sbjct 828 AATTCTGTCTATCCTCAAACGG-GATTT-TACTCGAATCAAGATCATATTCTT-CAGCAA 884
Query 923 GGGGCCAATGTT---TCATCGTTT--AT-CGGTA-C---A-CT-AC-CTCAGGGTTATGG 969
||||| |||| |||| ||| || | || | | || || ||| ||||| |
Sbjct 885 GGGGCGGGTGTTCCGTCAT-ATTTCAATGCACTATCTGTATCTGACTTTCAAGGTTACGC 943
Query 970 GGAAAACGCTGCAAATCCAATGCCGGTTTTTTCTGCTTCTGCTCTTCCTGTGGTTCATGG 1029
|||| |||||| |||||| |||| | |||| ||||||| |||| || ||| ||||||
Sbjct 944 AGAAACCGCTGCGAATCCAGTGCC--TGTTTT-TGCTTCTTCTCTCCCAGTGACTCATGG 1000
Query 1030 TTTTGGTGGGTCTTCCAGATCAGAAAAGTTGGTTATAAAAGTTATT-TGCTCTTCT-TCC 1087
||||||||||||||||||||||||| || ||||| | ||||| || ||| ||| | | |
Sbjct 1001 TTTTGGTGGGTCTTCCAGATCAGAAGAGCTGGTTTTTAAAGTC-TTGTGCCCTT-TGTGC 1058
Query 1088 AAAATCG-GCCGTGTTATTGGGAAAGGAGGATCAACCATTAAGGGAATAAGACAAGCAAG 1146
|| || || |||| || ||||||||||||||||||||||| |||||||| |||||||
Sbjct 1059 AATATTATGC-GTGTAATCGGGAAAGGAGGATCAACCATTAAAAGAATAAGAGAAGCAAG 1117
Query 1147 CGGGTCTCATATCGAGGTTAATGACTCGAGGGCAAA-TCA--TGATGATGACTGTGTTAT 1203
||| ||| ||| ||||||||||||||||| |||| | ||||||||| ||||||||
Sbjct 1118 CGGTTCTTGTATTGAGGTTAATGACTCGAGAACAAAGTGTGGTGATGATGAGTGTGTTAT 1177
Query 1204 CACTGTCACTGCTACAGAGTCTCCTGATGATTTGAAGTCTATGGCGGTTGAAGCTGTTCT 1263
|| |||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct 1178 CATTGTCACTGCTACAGAGTCTCCTGATGATATGAAGTCTATGGCTGTTGAAGCTGTTCT 1237
Query 1264 TCTACTTCAAGAGAAAATTAATGATGAAGACGAGGAAAAAGTTAAAATGCAACTTCTTGT 1323
||| || |||||| | || || ||||| || | |||||| ||||| ||||||||||||||
Sbjct 1238 TCTTCTGCAAGAGTATATCAACGATGAGGATGCGGAAAATGTTAAGATGCAACTTCTTGT 1297
Query 1324 ACCTTCTAAGGTAATAGGATGCATTATAGGGAAAAGTGGCTCAATCATAAGTGAAATCAG 1383
|||||||||| || |||||| |||||||||| ||||||||| |||||| ||||||||
Sbjct 1298 TTCTTCTAAGGTTATTGGATGCGTTATAGGGAAGAGTGGCTCAGTCATAAACGAAATCAG 1357
Query 1384 GAAAAGGACAAAGGCCAATAT-TCACATCTCAAAAGGGAGTAATAAGCCTAAGTGTGCCG 1442
|||||| || || || ||||| | ||||| ||||||| || ||| | ||
Sbjct 1358 GAAAAGAACCAATGCTAATATCTGT-ATCTCGAAAGGGA--AA-AAGG--A--TG----- 1404
Query 1443 ATCCCAATGATGAGCTCGTTGAGATATCGGGTGAAGTAAGC-GATGTGAGAGATGCTCTT 1501
| || | || | | ||| |||| |||||||| || | ||||||||| |||||
Sbjct 1405 A-CC---T--TG---T--T-GAGGTATCAGGTGAAGTCAGTAG-TGTGAGAGACGCTCTC 1451
Query 1502 ATTCAGATAGTTCTGAGGCTTCGAGATGATGTATTAAGG-GATAGAGAGATTGGTT-C-- 1557
|||||||| ||||| || |||||||| ||||| ||| || || | ||| | || || |
Sbjct 1452 ATTCAGATCGTTCTAAGACTTCGAGAGGATGTTTTA-GGAGACAAAGATAGTG-TTGCTA 1509
Query 1558 C-AGGAATCAACCTCCTGCAAGATCTGAGAA-TAACAATTTCTTCTCTTCGGGTAGTAGT 1615
| ||||| | |||||||||||| |||| || | | |||||| || ||||||||||
Sbjct 1510 CTAGGAA--A-CCTCCTGCAAGAACTGATAACTGT-AGTTTCTTATC---GGGTAGTAGT 1562
Query 1616 AATACTGGTCT-TGCACTTCCTTCATCTTTCATGTCTTC 1653
||| | ||| | | ||||||| ||| |||||||||||
Sbjct 1563 AATGCCGGT-TATACACTTCC---ATCGTTCATGTCTTC 1597
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 117318673665
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5