BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494356
Length=1605
Score E
Sequences producing significant alignments: (Bits) Value
AT5G46180.1 | Symbols: DELTA-OAT | ornithine-delta-aminotransfe... 2435 0.0
> AT5G46180.1 | Symbols: DELTA-OAT | ornithine-delta-aminotransferase
| chr5:18718475-18721375 REVERSE LENGTH=1823
Length=1823
Score = 2435 bits (1318), Expect = 0.0
Identities = 1517/1613 (94%), Gaps = 14/1613 (1%)
Strand=Plus/Plus
Query 1 CTCTAATGGCAGCCACCACGAGACGGTTGCTTCACTGTGTGTCTAAAAGAATT-ACTACC 59
|||||||||||||||||||||||||||||||| ||| |||||| ||||| ||| |||||
Sbjct 100 CTCTAATGGCAGCCACCACGAGACGGTTGCTTTACTATGTGTCCAAAAG-ATTCTCTACC 158
Query 60 GCCGGAGTGCGGCGGAGCTATGGCGGTCTGCCACAATCGAATTCTAAATCTCCTCCGACT 119
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 159 GCCGGAGTGCGGCGGAGCTATGGCGGTCTGCCACAATCGAATTCCAAATCTCCTCCGTCT 218
Query 120 TCTTCTCAACGATTGATGGAATTAGAATCTGAATTCAGTGCCCACAATTACCATCCTGTT 179
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 219 TCTTCTCAACGATTGATGGAATTGGAATCTGAATTCAGTGCCCACAATTACCATCCTGTT 278
Query 180 CCGGTTGTGTTTTCTCGCGCAAATGGCTCAACCATATGGGATCCTGAAGGAAAGAGATAC 239
|||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||
Sbjct 279 CCGGTTGTGTTTTCTCGCGCGAATGGCTCAACTATATGGGACCCTGAAGGAAAGAGATAC 338
Query 240 ATTGATTTTCTTGCAGCTTACTCTGCTGTTAACCAGGGACATTGCCATCCTAAGATCATG 299
|||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||
Sbjct 339 ATTGATTTTCTTGCAGCTTACTCTGCAGTTAATCAGGGACATTGTCATCCTAAGATCATG 398
Query 300 AAGGCATTGCAGGAACAAGTGGAGAAACTCACTTTAAGTTCACGTGCATTTTTCAACGAT 359
|||||||||||||||||||||||||| ||||||||||||||||| || |||| |||||||
Sbjct 399 AAGGCATTGCAGGAACAAGTGGAGAAGCTCACTTTAAGTTCACGAGCGTTTTACAACGAT 458
Query 360 AAATTCCCGGTATTTGCAGAGCGTCTCACAAATATGTTCGGTTATGATATGGTGCTTCCT 419
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 459 AAATTCCCGGTATTTGCTGAGCGTCTCACAAACATGTTCGGTTATGATATGGTGCTTCCT 518
Query 420 ATGAACACGGGGGCTGAAGGTGTCGAAACAGCTTTGAAACTAGCAAGAAAATGGGGTCAT 479
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 519 ATGAACACGGGTGCTGAAGGTGTCGAAACTGCTTTGAAACTAGCAAGAAAATGGGGTCAT 578
Query 480 GAAATGAAAAATATTCCCAAAGATGAGGTTATAATTGTCTCTTGCTGTGGCTGCTTCCAT 539
|||| |||||||||||||||||| |||| ||| ||||||||||| ||||||||||| |||
Sbjct 579 GAAAAGAAAAATATTCCCAAAGACGAGGCTATCATTGTCTCTTGTTGTGGCTGCTTTCAT 638
Query 540 GGTCGTACATTAGCAATTATTTCCATGAGTTGTGACAACGATGCTACGCGTGGATTCGGG 599
|| ||||||||||||||| ||||||||||||||||||| |||||||| ||||||||||||
Sbjct 639 GGACGTACATTAGCAATTGTTTCCATGAGTTGTGACAATGATGCTACTCGTGGATTCGGG 698
Query 600 CCATTGTTGCCTGGGAATCTTAAAGTTGATTTTGGTGACGCTGATTCACTTGAGAAAATC 659
||||||||||| |||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 699 CCATTGTTGCCAGGGAATCTTAAAGTTGATTTTGGTGATGCGGATTCACTTGAGAAAATC 758
Query 660 TTTAAAGAAAAAGGAGATAAAATAGCGGGATTTCTTTTCGAACCTATTCAAGGCGAAGCT 719
||||||||||| ||||||| ||||||||||||||| ||||| ||||||||||||||||||
Sbjct 759 TTTAAAGAAAAGGGAGATAGAATAGCGGGATTTCTATTCGAGCCTATTCAAGGCGAAGCT 818
Query 720 GGAGTTATTATTCCTCCGGACGGTTATTTGAAAGCTGTTAGAGAACTCTGCACAAAACAC 779
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| ||
Sbjct 819 GGAGTTATTATTCCTCCCGACGGTTACTTGAAAGCTGTTAGAGAACTCTGCACAAAATAC 878
Query 780 AATGTTTTGATGATAGCAGATGAAGTACAAAGCGGTCTAGCAAGATCCGGAAAGATGTTA 839
||||||||||||||||| |||||||||||||||||||| || |||||||| |||||| ||
Sbjct 879 AATGTTTTGATGATAGCGGATGAAGTACAAAGCGGTCTGGCTAGATCCGGGAAGATGCTA 938
Query 840 GCTTGTGACTGGGAAGAAATTCGTCCCGACATGGTGATACTTGGGAAAGCATTAGGTGGA 899
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 939 GCTTGTGATTGGGAAGAAATTCGTCCTGACATGGTGATACTTGGGAAAGCATTAGGTGGA 998
Query 900 GGAGTAATTCCAGTAAGTGCAGTGCTTGCTGATAAAGATGTGATGCTTCATATCAAACCC 959
|||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 999 GGAGTAATTCCAGTAAGTGCAGTGCTTGCTGATAAAGACGTGATGCTTCATATAAAACCT 1058
Query 960 GGCCAACACGGAAGCACATTTGGTGGGAATCCTTTAGCTAGTGCTGTAGCTATGGCTTCT 1019
|| ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 1059 GGTCAACACGGAAGCACATTTGGTGGTAACCCTTTAGCTAGTGCTGTAGCTATGGCTTCT 1118
Query 1020 TTAGACGTTATCGAGGAAGAAAAACTAGTGGAAAGATCAGCAAGTCTTGGAGAGGAGCTG 1079
||||||||||||| |||||||||||| || |||||||||||||||||||||||||| |||
Sbjct 1119 TTAGACGTTATCGTGGAAGAAAAACTCGTTGAAAGATCAGCAAGTCTTGGAGAGGAACTG 1178
Query 1080 AGGATTCAATTGAATGAAATCAAGAAACAGTTTCCGGATTACATAAAGGAAGTACGAGGA 1139
|||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 1179 AGGATTCAATTGAATGAAATCAAGAAACAGTTTCCGAAGTACATAAAGGAAGTACGAGGA 1238
Query 1140 AGAGGACT-GTTTAATGCGATTGAGTTCAATAGTGAAAGCTTGTCCCCGGTTTCAGCTTA 1198
||||| || |||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1239 AGAGG-CTTGTTTAATGCGATTGAGTTCAATAGCGAAAGCTTGTCCCCGGTTTCAGCTTA 1297
Query 1199 CGATATTTGCTTGAGCTTGAAGGAGAGAGGAGTCTTGGCTAAACCGACTCACAATACTAT 1258
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 1298 CGATATTTGCTTGAGCTTGAAGGAGAGAGGAGTCTTGGCTAAACCTACTCACAACACTAT 1357
Query 1259 TGTCCGGTTAACTCCACCACTCTCCATAAGCTCTGATGAACTCCGAGAAGGCTCCAAGGC 1318
|||||||||||||||||||||||| ||||||||||||||||||||||| || || ||||
Sbjct 1358 TGTCCGGTTAACTCCACCACTCTCTATAAGCTCTGATGAACTCCGAGATGGATCTGAGGC 1417
Query 1319 TCTTCACGATGTTCTTGAGCTCGATCTTCCAAATCTGCGGAAAATCAATTCCGGTAAAAC 1378
|||||||||||| || |||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1418 TCTTCACGATGTACTCGAGCTCGATCTTCCAAATCTGCTGAAAATCAATTCCGGTAAAAC 1477
Query 1379 CCCGGTTTCTCACATAACTGAGTGTGATCGCTGTGGAAGAAACCTCTATGCTTGAACCGG 1438
||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1478 TCCGGTTTCTCATATAACCGAGTGTGATCGCTGTGGAAGAAACCTCTATGCTTGAACCGG 1537
Query 1439 TTTGAAACTTGACTAGGTTCTGGTTTAATTAGATTCTTTGTATCTTGTGATTTC-AC-G- 1495
|||||||||||| ||||||||||| ||||||||||||||||||||||||||||| | |
Sbjct 1538 TTTGAAACTTGATTAGGTTCTGGTATAATTAGATTCTTTGTATCTTGTGATTTCCATAGG 1597
Query 1496 AGACATCACCAGTTTGGTATA-GAAAATATAT-AATACGTATAAGGCCGAACCGGATTGT 1553
| ||| |||| |||||||||| |||| ||||| || | |||||||||||||||||||| |
Sbjct 1598 ACACAGCACCGGTTTGGTATAAGAAA-TATATTAA-A-GTATAAGGCCGAACCGGATTCT 1654
Query 1554 ACCGAGCTTGGTAGAAATAACTA-G-TTTATTTCTGGTTTGGCATTAAATAAA 1604
|||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 1655 ACCGAGCTTGGTAGAAATAACTCTGGTTTATTTCTGGTTTGGCATTAAATAAA 1707
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79266660555
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5