BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494358
Length=573
Score E
Sequences producing significant alignments: (Bits) Value
AT5G46160.1 | Symbols: | Ribosomal protein L14p/L23e family pr... 904 0.0
> AT5G46160.1 | Symbols: | Ribosomal protein L14p/L23e family
protein | chr5:18711160-18712532 REVERSE LENGTH=909
Length=909
Score = 904 bits (489), Expect = 0.0
Identities = 541/566 (96%), Gaps = 3/566 (1%)
Strand=Plus/Plus
Query 1 TTTTTCCAGTAACAACGAATCTAAATGGCGGCTGCTTTTGCTTCAAGATTAACCCGAGGA 60
||| |||| |||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 68 TTTCTCCATTAACAACGAATCTAAATGGCCGCTGCTTTTGCTTCCAGATTAACCCGAGGA 127
Query 61 GGACGTTCATTGCTTGGAGGTCTTAACAATGGTGGTTTGATGAATTCTTCTAATGGAATG 120
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 128 GGACGTTCATTGCTTGGAGGTCTTAACAATGGTGGTTCGATGAATTCTTCTAATGGAATG 187
Query 121 ATGAATGAAAGTATCCTCTCTCAGCA--A-CAGCGAAGGACATTCATTCAAATGGGGACA 177
|||||||||||||||||||||||||| | ||| |||||||||| ||||| ||||||||
Sbjct 188 ATGAATGAAAGTATCCTCTCTCAGCAGCAGCAGAGAAGGACATTTATTCAGATGGGGACT 247
Query 178 GTTCTCAAAGTCGTGGACAATTCAGGTGCGAAGAAAGTGATGTGTATTCAAGCTCTAAAG 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 248 GTTCTCAAAGTCGTGGACAATTCAGGTGCGAAGAAAGTGATGTGTATTCAAGCTCTAAAG 307
Query 238 GGTAAAAAAGGAGCTAGACTTGGCGATACTATAGTTGCTTCAGTGAAAGAAGCGATGCCA 297
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 308 GGGAAAAAAGGAGCTAGACTTGGAGATACTATAGTTGCTTCAGTGAAAGAAGCGATGCCA 367
Query 298 AACGGTAAAGTGAAGAAAGGAGCGGTTGTGTATGGTGTGGTTGTGCGTGCTGCGATGCAG 357
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 368 AACGGTAAAGTGAAGAAAGGAGCGGTTGTGTATGGTGTGGTTGTTCGTGCTGCGATGCAG 427
Query 358 AGAGGTCGTGTTGATGGAAGCGAAGTTAGGTTTGATGATAACGCGGTTGTTCTTGTTGAT 417
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 428 AGAGGTCGTGTTGATGGAAGTGAAGTTAGGTTTGATGATAACGCGGTTGTTCTTGTTGAT 487
Query 418 AGTAAAGATAAGAATACTAAAACCGATCGCCAGCCGATTGGTACTAGAGTTTTTGGTCCT 477
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 488 AGTAAAGATAAGAATACTAAAACTGATCGCCAGCCGATTGGTACTAGAGTGTTTGGTCCT 547
Query 478 GTTCCGCACGAGCTTCGCAAGAAGAAACATCTCAAGATTCTTGCTTTGGCTCAACACATT 537
||||| || |||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 548 GTTCCTCATGAGCTTCGCAAGAAGAAACATCTCAAGATTCTTGCTTTGGCTCAACACGTT 607
Query 538 GCTTGAGACGCAACAAAAATGTAAAC 563
|| ||||| ||||||||| ||||||
Sbjct 608 GCGTGAGATGCAACAAAACCGTAAAC 633
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27528312556
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5