BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg494358 Length=573 Score E Sequences producing significant alignments: (Bits) Value AT5G46160.1 | Symbols: | Ribosomal protein L14p/L23e family pr... 904 0.0 > AT5G46160.1 | Symbols: | Ribosomal protein L14p/L23e family protein | chr5:18711160-18712532 REVERSE LENGTH=909 Length=909 Score = 904 bits (489), Expect = 0.0 Identities = 541/566 (96%), Gaps = 3/566 (1%) Strand=Plus/Plus Query 1 TTTTTCCAGTAACAACGAATCTAAATGGCGGCTGCTTTTGCTTCAAGATTAACCCGAGGA 60 ||| |||| |||||||||||||||||||| |||||||||||||| ||||||||||||||| Sbjct 68 TTTCTCCATTAACAACGAATCTAAATGGCCGCTGCTTTTGCTTCCAGATTAACCCGAGGA 127 Query 61 GGACGTTCATTGCTTGGAGGTCTTAACAATGGTGGTTTGATGAATTCTTCTAATGGAATG 120 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 128 GGACGTTCATTGCTTGGAGGTCTTAACAATGGTGGTTCGATGAATTCTTCTAATGGAATG 187 Query 121 ATGAATGAAAGTATCCTCTCTCAGCA--A-CAGCGAAGGACATTCATTCAAATGGGGACA 177 |||||||||||||||||||||||||| | ||| |||||||||| ||||| |||||||| Sbjct 188 ATGAATGAAAGTATCCTCTCTCAGCAGCAGCAGAGAAGGACATTTATTCAGATGGGGACT 247 Query 178 GTTCTCAAAGTCGTGGACAATTCAGGTGCGAAGAAAGTGATGTGTATTCAAGCTCTAAAG 237 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 248 GTTCTCAAAGTCGTGGACAATTCAGGTGCGAAGAAAGTGATGTGTATTCAAGCTCTAAAG 307 Query 238 GGTAAAAAAGGAGCTAGACTTGGCGATACTATAGTTGCTTCAGTGAAAGAAGCGATGCCA 297 || |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 308 GGGAAAAAAGGAGCTAGACTTGGAGATACTATAGTTGCTTCAGTGAAAGAAGCGATGCCA 367 Query 298 AACGGTAAAGTGAAGAAAGGAGCGGTTGTGTATGGTGTGGTTGTGCGTGCTGCGATGCAG 357 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 368 AACGGTAAAGTGAAGAAAGGAGCGGTTGTGTATGGTGTGGTTGTTCGTGCTGCGATGCAG 427 Query 358 AGAGGTCGTGTTGATGGAAGCGAAGTTAGGTTTGATGATAACGCGGTTGTTCTTGTTGAT 417 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 428 AGAGGTCGTGTTGATGGAAGTGAAGTTAGGTTTGATGATAACGCGGTTGTTCTTGTTGAT 487 Query 418 AGTAAAGATAAGAATACTAAAACCGATCGCCAGCCGATTGGTACTAGAGTTTTTGGTCCT 477 ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| Sbjct 488 AGTAAAGATAAGAATACTAAAACTGATCGCCAGCCGATTGGTACTAGAGTGTTTGGTCCT 547 Query 478 GTTCCGCACGAGCTTCGCAAGAAGAAACATCTCAAGATTCTTGCTTTGGCTCAACACATT 537 ||||| || |||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 548 GTTCCTCATGAGCTTCGCAAGAAGAAACATCTCAAGATTCTTGCTTTGGCTCAACACGTT 607 Query 538 GCTTGAGACGCAACAAAAATGTAAAC 563 || ||||| ||||||||| |||||| Sbjct 608 GCGTGAGATGCAACAAAACCGTAAAC 633 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 27528312556 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5