BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494361
Length=1329
Score E
Sequences producing significant alignments: (Bits) Value
AT5G46140.1 | Symbols: | Protein of unknown function (DUF295) ... 1958 0.0
AT5G46130.1 | Symbols: | Protein of unknown function (DUF295) ... 484 7e-136
> AT5G46140.1 | Symbols: | Protein of unknown function (DUF295)
| chr5:18704997-18706708 REVERSE LENGTH=1409
Length=1409
Score = 1958 bits (1060), Expect = 0.0
Identities = 1249/1338 (93%), Gaps = 22/1338 (2%)
Strand=Plus/Plus
Query 1 AAAAATATTATTCTCGTCTTTAATGTCAACTTGGTGTTCAAGCATAAATCTCTATAGAGA 60
||||| |||||||||||||||||||||||||||||||||||| |||||||| | ||||||
Sbjct 24 AAAAAGATTATTCTCGTCTTTAATGTCAACTTGGTGTTCAAG-ATAAATCTGTCTAGAGA 82
Query 61 AGACGAGAGAAGATCCAC-ACTAAAAATCATCACCTCAACATAGTTTAGAGATTTTAGAA 119
|||| |||||||||||| | |||||||||| | ||||||||||||||||||||||||||
Sbjct 83 AGAC--GAGAAGATCCACGA-TAAAAATCATTAACTCAACATAGTTTAGAGATTTTAGAA 139
Query 120 ATATGCCTCAACTTTTCAGTCAAATGTTGAAACCCTTTGTCAACAAAAACGTCTTCAGAC 179
|||||||||||||| |||| ||||| ||||| || |||||||||||||| ||||||||||
Sbjct 140 ATATGCCTCAACTTCTCAGCCAAATCTTGAAGCCTTTTGTCAACAAAAATGTCTTCAGAC 199
Query 180 ACAACATAATGGTTCGGACGTGGCGTTCGTCTACGCAAAGCCTCGGTAGCTACCCGTTTA 239
|||||||||||||||||||||||||||||||||||||||||| |||| |||||||| | |
Sbjct 200 ACAACATAATGGTTCGGACGTGGCGTTCGTCTACGCAAAGCCACGGTTGCTACCCGATGA 259
Query 240 TGTTAATTGACCACATCATTAAGGTGGGAGATTCTTCAGATGGTCGCATAGAGAGAGGCG 299
|| | |||||||||||| ||||||| ||||||||||||||||||||| |||||||||| |
Sbjct 260 TGATGATTGACCACATCCTTAAGGTCGGAGATTCTTCAGATGGTCGCGTAGAGAGAGGGG 319
Query 300 ACGAATCAATAGGTGAAAAAGAAGTTTTGATTA-AGGACCCGAAACTCGCTGAAGTTGTT 358
|||||||| ||||||||||||| || | ||||| | ||||||||||| ||||||||||||
Sbjct 320 ACGAATCATTAGGTGAAAAAGAGGTCTGGATTACA-GACCCGAAACTAGCTGAAGTTGTT 378
Query 359 CGTAGAACAATGAATATCAAATTTAACCAAAGGGGACGAGATATTCACATGGTGGAGAAG 418
||||| ||||| |||||| ||| ||||||||||||| |||||||||||||||||| |||
Sbjct 379 CGTAGTTCAATG-ATATCATATTAAACCAAAGGGGACAAGATATTCACATGGTGGAAAAG 437
Query 419 ACAGAGTATACACTCCCCAAGTTTATTGATAATGTTCATCTCTACATGGAATACATATCA 478
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 438 ACAGAGTATACACTCCCCAAGTTTATTGATAATGTTCATCTCTACATGGAACACATATCA 497
Query 479 TCTCGAAACATAACCAAGAATTTTTACTTTCCACCTCTTCCTAAAGGTTCTCAAGTCCAA 538
||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 498 TCTCGAAACATAACCGAGAATTTTTACTTTCCACCTCTTCCTAAAGGTTCTCAAATCCAA 557
Query 539 AACATAGCGATGTCCTCTTGTCCTGACATAAACAATGAAGATTGGGTTATGGCTGTCAAG 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 558 AACATAGCGATGTCCTCTTGTCCTGACATAAACAATGAAGATTGGGTTATGGCTGTCAAG 617
Query 599 TTTTCAGGATCTAAGTTGAAGCTTTATAGACATAACAAAGACTTTCGGTGGATCGATATC 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 618 TTTTCAGGATCTAAGTTGAAGCTTTATAGACATAACAAAGACTTTCGGTGGATCGATATC 677
Query 659 GAAACCACTCATGAGTCTATAAGTCCTCATTCGAGTCTCATGTATTCTAAGAAAGATCAA 718
|||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 678 GAAACCACGCATGAGTCTATAAGCCCTCATTCCAGTCTCATGTATTCTAAGAAAGATCAA 737
Query 719 AGGTTCTACGTTCCAACTCCTGGATGCAATTACTTGTGCTCCTTTGATCTCAACTTCAAG 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 738 AGGTTCTACGTTCCAACTCCTGGATGCAATTACTTGTGCTCCTTTGATCTCAACTTCAAG 797
Query 779 GAGAAGGATAAGCTCGAGTTTGTCGAGCTGCGaaaaaaaGATCTTCCTAAGTATGAGTTG 838
||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| |||
Sbjct 798 GAGAAGGATAAGCTCGAGTTTGTCGAGGTGCGAAAAACAGATCTTCCTAAGTATGAATTG 857
Query 839 TTCGAGTTGATGGAGATGAATTCCTTTACCAGGACAGACCACATGGTGGAGTCACCCTCC 898
|||||||| |||||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct 858 TTCGAGTTTATGGAGATAAATTCCTTTACCAGGACAGACCACATGGTGGAGTCATCCTCC 917
Query 899 GGTGAACACTTCCTTAT-TACATGGTACTATGGCGACGAGTTTGAACTT--T-ACAAAGA 954
|||||||| |||||||| | ||||||||||||| ||||||| | ||||| | |||||||
Sbjct 918 GGTGAACAATTCCTTATCT-CATGGTACTATGGGGACGAGTGTAAACTTAATTACAAAGA 976
Query 955 GTTAACAGTCATTCACAAAACAAAGTCG-TTCAAGGTGTTTAGAGAGGATGAACAGTTAA 1013
|||||||||||||||||| ||||| | |||||||||||||||||| | ||| ||||||
Sbjct 977 GTTAACAGTCATTCACAACACAAAA-CAATTCAAGGTGTTTAGAGAGAAAGAAGAGTTAA 1035
Query 1014 CCGATAGAAAAACAAAATTCATGTCTTACACCGAAAACATTGGAGATCTTTGTATTTTTC 1073
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1036 CCGATAGAAAAACAAAATTCATGTCTTACACCGAAAACATTGGAGATCTTTGTATTTTTC 1095
Query 1074 TTGGACATGGTGAAGCTTCATGTGTCCCAGCGAGCACTATTCCTGGTCTTAAGCCTAATT 1133
|||||||||||||||||| ||| ||||||||||||| ||||||||||| ||||||||||
Sbjct 1096 TTGGACATGGTGAAGCTTTGTGTATCCCAGCGAGCACCATTCCTGGTCTAAAGCCTAATT 1155
Query 1134 GCATCTATTTCAG-GGGACATAACTATGGTGTTTTCGATATCACCACCCAAACTTGC-AC 1191
||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1156 GCATCTATTTC-GCGGGACATAACTATGGTGTTTTCGATATCACCACCCAAACTTGCTA- 1213
Query 1192 TGTCTTCACCAACGATGAAGGTTTATTAAGCTCCACTCAATTTCCTTCTTGGCCTCATCC 1251
| ||||| ||| |||||||||| | |||||||||||||||||||||| |||||||||||
Sbjct 1214 TCTCTTCTCCACCGATGAAGGTCTGCTAAGCTCCACTCAATTTCCTTCGTGGCCTCATCC 1273
Query 1252 ACTTTCGCTCACTCCTAATTAATATGATGTCATGTTGTAtttttttttATATGCTTTATT 1311
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1274 ACTTTCGCTCACTCCTAATTAATATGATGTCATGTTGTATTTTTT---ATATGCTTTATT 1330
Query 1312 TGAAAGAACACTTTTTAC 1329
|||||||||||||| |||
Sbjct 1331 TGAAAGAACACTTTCTAC 1348
> AT5G46130.1 | Symbols: | Protein of unknown function (DUF295)
| chr5:18702914-18704484 REVERSE LENGTH=1369
Length=1369
Score = 484 bits (262), Expect = 7e-136
Identities = 626/789 (79%), Gaps = 76/789 (10%)
Strand=Plus/Plus
Query 512 CCTCTTCCTAAAGGTTCTCAAGTCCAAAACATAGCGATGTCCTCT-TGTCCTGACATAAA 570
|||||||| ||||| |||||| |||||||||| || ||| ||||| | ||||||| ||||
Sbjct 476 CCTCTTCCAAAAGGCTCTCAAATCCAAAACATTGCCATGACCTCTCT-TCCTGACCTAAA 534
Query 571 CAATGAAGATTGGGTTATGGCTGTCAAGTTTTCAGG-ATCTAAG-TTGAAGCTTTATAGA 628
||||| |||||||| | ||| |||||||||| || |||| || || | ||| |||||
Sbjct 535 AAATGATGATTGGGTCGTTGCTATCAAGTTTTC-GGTATCTCAGCTT-ATGCTCTATAGG 592
Query 629 CATAACAAAGACTTTCGGTGGATCGATATCGAAACCA--C-T---CATGAGTCTATAAGT 682
||| |||||||| ||||||||| |||||||||||| | | ||||||| |||| |
Sbjct 593 CAT---AAAGACTTACGGTGGATCAATATCGAAACCACGCATGGGCATGAGTGTATATG- 648
Query 683 CCTCAT--TCGAGTCTCATGTATTCTAAGAAAGATCAAAGGTTCTAC-GTTCCAACTCCT 739
|| ||| || ||||||| ||| ||||||||||| ||||| || ||| || ||||||||
Sbjct 649 CC-CATACTCAAGTCTCAAGTACTCTAAGAAAGAGCAAAGATTTTACACTT-CAACTCCT 706
Query 740 GGATGCAATTACTTGTGCTCCTTTGATCTCAACTTCAAGGAGAAGGATAAGCTCGA-GT- 797
||| || ||| ||||||| |||| |||||||||||| ||||| || ||| | | ||
Sbjct 707 GGAGGCGATTGGATGTGCTCATTTGGTCTCAACTTCAAAGAGAAAGACGAGC-CCACGTA 765
Query 798 TTGTCGAGCTGCGa-aaaaaaGATCTTCCTAAGTATGA-GTTGT-TCGAGTT-GATGGAG 853
| | | | || ||||||||||||||| ||||| | ||||| | ||||| || ||||
Sbjct 766 TCATATA-AT-TGACAAAAAAGATCTTCCTCAGTAT-ATGTTGTAT-GAGTTGGA-GGAG 820
Query 854 ATGAATTCCTTTACCAGGACAGACCA-CATGGTGGAGTCACCCTCCGGTGAACACTTCCT 912
|||||||| |||||||||||||| || | | ||||||||||||||||| ||||| |||||
Sbjct 821 ATGAATTCGTTTACCAGGACAGATCATC-TAGTGGAGTCACCCTCCGGGGAACAATTCCT 879
Query 913 TAT-TACATGGTACTATGGCGACGAGTTTGAACTTTACAAAGAGTTAACAGTCATTCACA 971
|| | ||||||||||||| |||| |||| | | | ||| |||||| | ||||
Sbjct 880 CATCT-CATGGTACTATGGGGACGCCTTTG-A--GT-C--AGA---CACAGTCGTGCACA 929
Query 972 AAACAAAGTC-GTTCAAGGTGTTTAGAGAGGATGAACAGTTAACCGATAGAAA-A-ACAA 1028
|||||||| | |||| |||||||| | | || ||| || || | || ||| | ||||
Sbjct 930 AAACAAAG-CGGTTCTTGGTGTTTA-A-A-GA-GAA-AG-AAAATGCTA-AAAGACACAA 981
Query 1029 A-ATTCATGTCTTACACCGAAAACATTGGAGATCTTTGTATTTTTCTTGGACATGGTGAA 1087
| | | |||| |||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 982 AGA-T-ATGTATTACACTGAAAATATTGGAGATCTTTGTATTTTTCTTGGACATGGTGAA 1039
Query 1088 GCT-TCATGTGTCCCAGCGAGCAC-TATTCCTGGTCTTAAGCCTAATTGCATCTATTTCA 1145
|| | ||||||||||| ||| | | | || |||||||||||||||||||||||||||
Sbjct 1040 CCTATG-TGTGTCCCAGCAAGCTCGTCT-CCAGGTCTTAAGCCTAATTGCATCTATTTC- 1096
Query 1146 G-GGGACATAACTATGGTGTTTTCGATATCACCACCCAAACT-TGCACTGTCTTC-AC-C 1201
| ||||||||||| |||||||| ||||||||| || ||||| | |||| ||||| || |
Sbjct 1097 GCGGGACATAACTTTGGTGTTTACGATATCACGACGCAAACAAT-CACTCTCTTCTACAC 1155
Query 1202 AACGATGAAGGTTTATTAAGCTCCACT-CAATTTCCTT-CTTGGCCTCATCCACTTTCGC 1259
| || |||||| |||||| |||||| || ||||||| || ||||||||||| |||| |
Sbjct 1156 A--GAGGAAGGTCCATTAAGATCCACTGCA-TTTCCTTACT-GGCCTCATCCATTTTCAC 1211
Query 1260 TCACTCCTA 1268
|||||||||
Sbjct 1212 TCACTCCTA 1220
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65411310135
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5