BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg494363

Length=343
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G46115.1 | Symbols:  | unknown protein; Has 30201 Blast hits...   486    5e-137


> AT5G46115.1 | Symbols:  | unknown protein; Has 30201 Blast hits 
to 17322 proteins in 780 species: Archae - 12; Bacteria - 
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses 
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:18701320-18701740 
FORWARD LENGTH=421
Length=421

 Score =  486 bits (263),  Expect = 5e-137
 Identities = 325/353 (92%), Gaps = 11/353 (3%)
 Strand=Plus/Plus

Query  1    AAAAATGGCTCAATCACT--A----ACGTCTCTTCTCTGTCTCA-CTTCTTCATCGCATC  53
            ||||||||||||||||||  |    ||||||||||||||||||| |||||||||| ||||
Sbjct  2    AAAAATGGCTCAATCACTAAACCTTACGTCTCTTCTCTGTCTCACCTTCTTCATCTCATC  61

Query  54   TTTCTTTCATT-CGCAAACACAAGCAAGAAACCGCCAAATTTTAACCGGAGTAACCGTTA  112
            |||||  | || ||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct  62   TTTCTAGC-TTACGCAAACACAAGCAAGAAACCGCCAAACTTTAACCGGAGTAACCGATA  120

Query  113  AAAACCATATTTTATTCATGCCAGAGAATCACCGGAGCACGGTGGATGAGGAAAACGAGC  172
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  121  AAAACCATATTTTATTCATGCCAGAGAATCACCGGAGCACGATGGATGAGGAAAACGAGC  180

Query  173  AAGAGCCAGCCTTTGTCCGAGAGACAGGACATGGCTATGGTCTCTACGGTCATCTTGAGA  232
            ||||||||||||||||||||||||| |||||||| ||||||||||| || |||| |||||
Sbjct  181  AAGAGCCAGCCTTTGTCCGAGAGACTGGACATGGTTATGGTCTCTATGGCCATCGTGAGA  240

Query  233  TTCACA--AACAACGACGAAAACGATAACAGTGACAACGATCAATTTTACTACAGAAGCG  290
            ||||||  ||||||||||||||| | |||||||||||||||||||||||||| |||||||
Sbjct  241  TTCACACCAACAACGACGAAAACAAGAACAGTGACAACGATCAATTTTACTATAGAAGCG  300

Query  291  ACGCTTATGGAAATCGCGATGGTAGATTTAAGTAAAGAGATTGATATTTGTTT  343
            ||||||||||||| |||||||||||||||||||| ||||||||| ||||||||
Sbjct  301  ACGCTTATGGAAACCGCGATGGTAGATTTAAGTAGAGAGATTGAGATTTGTTT  353



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16035411931


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5