BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494370
Length=1228
Score E
Sequences producing significant alignments: (Bits) Value
AT5G46080.1 | Symbols: | Protein kinase superfamily protein | ... 1757 0.0
> AT5G46080.1 | Symbols: | Protein kinase superfamily protein
| chr5:18689542-18690857 REVERSE LENGTH=1316
Length=1316
Score = 1757 bits (951), Expect = 0.0
Identities = 1164/1261 (92%), Gaps = 38/1261 (3%)
Strand=Plus/Plus
Query 1 ATTGACCATCTAGACG-AAattt-tttccttcatttgtcttttttgacctttattttatt 58
|||||||||||||||| |||||| ||||| | |||||||||||||||||||||||||||
Sbjct 1 ATTGACCATCTAGACGAAAATTTCTTTCC-T--TTTGTCTTTTTTGACCTTTATTTTATT 57
Query 59 ttattattctcttcg----t--ata-t-----------at-at--ataatcatacattta 97
||||||||||||||| | ||| | || || |||||||||||||||
Sbjct 58 TTATTATTCTCTTCGTATATAAATATTACACAACACCCATAATCCATAATCATACATTTA 117
Query 98 --tt-tttattG-AATAAAATGGACAAATCTGAAAAAATCGCATACGCTTCAGTTTTGtc 153
|| ||| ||| ||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct 118 TTTTCTTTGTTGAAATCAAATGGACAAATCTGAAAAAATCGCTTACGCTTCAGTTTTGTC 177
Query 154 tcttctttctctttctcttcttcttctcataatctttctcttcttATTATGCAGaaaaaa 213
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 178 TCTTCTCTCTCTTTCTCTTCTTCTTCTCATAATCTTCCTCTTCTTATTATGCAGAAAAAA 237
Query 214 aCCAAACCGGTCCGACGACGAATCTCTTCTTCCAGAAACCAAACCGGCCGGTCTTGCTTA 273
||||||||||||||||||||||| |||||||||||||||||||||||| |||||| ||||
Sbjct 238 ACCAAACCGGTCCGACGACGAATATCTTCTTCCAGAAACCAAACCGGCTGGTCTTTCTTA 297
Query 274 TCCGTTAACCGACTTAGATTCAGCAACCGACGGATTCAACCAGCGACGAATCATTGGTTC 333
| |||||||||| ||||| ||||||||||||||||| ||||| ||||||||||| |||||
Sbjct 298 TTCGTTAACCGAATTAGACTCAGCAACCGACGGATTTAACCAACGACGAATCATCGGTTC 357
Query 334 TGGTCGGTTAGGCACGGTTTACGCTGCTATTATTCCAGATCATAAAAACCTCGTCGCAGT 393
|||||||||||| |||||||||||||| |||||||||||||||||||| |||||||| ||
Sbjct 358 TGGTCGGTTAGGAACGGTTTACGCTGCGATTATTCCAGATCATAAAAATCTCGTCGCGGT 417
Query 394 CAAAAGAATACACCCCGGTTTGGTTTTGAGTAAACCGGGTTTCGGTTTTTCCACGGTTAT 453
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 TAAAAGAATACATCCCGGTTTGGTTTTGAGTAAACCGGGTTTCGGTTTTTCCACGGTTAT 477
Query 454 TAAATCGCTTTCTTCTTCTCATCATCCAAACGTCGTTTCAATCTTAGGATTCTCAGAAGC 513
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 478 TAAATCGCTTTCTTCTTCTCATCATCCAAACGTCGTTTCGATTTTAGGATTCTCAGAAGC 537
Query 514 TCCCGGAGAAAGAATCGTAGTTACAGAATTCGTCGGAGAAGGAAAAAGCTTGAGTGATCA 573
|||||||||||||||||| || |||||||||||||||||||| || ||||||||||||||
Sbjct 538 TCCCGGAGAAAGAATCGTCGTAACAGAATTCGTCGGAGAAGGTAAGAGCTTGAGTGATCA 597
Query 574 CTTACAC-GAAG----AA-TCAGCGGTTGCGGTTGAATTTGGTTGGAAAACGCGTTTTAA 627
||||||| || | || |||||| ||||||||||||||| |||||||||||||||||
Sbjct 598 CTTACACGGAGGTTCCAATTCAGCGACTGCGGTTGAATTTGGATGGAAAACGCGTTTTAA 657
Query 628 AATCGCGGCGGGAGCAGCGAGAGGATTGGAGTATCTACACGAAATCGCAAACCCTAGAAT 687
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 658 AATCGCGGCGGGAGCAGCGAGAGGATTGGAGTATTTACACGAAATCGCAAACCCTAGAAT 717
Query 688 CGTCCACGGTCGATTTACGTCATCGAATATATTGATAGACGACAAATCAACGGCTAAGAT 747
||| |||||| |||| || ||||||||| | ||| ||||||| |||||||||||||||||
Sbjct 718 CGTTCACGGTAGATTCACATCATCGAATGTTTTGGTAGACGAGAAATCAACGGCTAAGAT 777
Query 748 TTGCGATTACGGATTTGGGTTTTTGATTCCGATTGAAAAATCTGGGATTTTTGGGTATGT 807
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 778 TTGCGATTACGGATTTGGGTTTTTGATTCCGATTGAAAAATCTGGGATTTTTGGGTATAT 837
Query 808 AGAAGAAGGTTATTGCAAAGAGAGTGATGTGTATGGATACGGCGTCGTTTTAATGGAGAT 867
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 AGAAGAAGGTTATTGCAAAGAGAGTGATGTGTATGGATACGGCGTCGTTTTAATGGAGAT 897
Query 868 TTTGAGTGGAAGAAGAAGTGAAAATGGATTGATTGTGAAATGGGCAACACCATTGATTAA 927
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 898 TTTGAGTGGAAGAAGAAGTGAAAATGGATTGATTGTGAAATGGGCAACTCCATTGATTAA 957
Query 928 AGAACAGAGATTTGGTGAGTTTTTAGATTCGAGGATTGTTGTTCAAAGTGAGATTAAGAG 987
|||||||||||||| |||| |||||||| ||||||||||||||||||||||||| |||||
Sbjct 958 AGAACAGAGATTTGCTGAGCTTTTAGATCCGAGGATTGTTGTTCAAAGTGAGATCAAGAG 1017
Query 988 TTTGGTAATAAGATTAGCGAAGGTTGCTTTAGCATGTGTCGGGAATTCACGGAGGAGTCG 1047
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1018 TTTGGTAATAAGATTAGCGAAGGTTGCTTTAGCTTGTGTCGGGAATTCACGGAGGAGTCG 1077
Query 1048 GCCGTCGATTTCTGAAGTGGCGGCGATTTTGAATAGTTTGGAGATGGAAGGAGGGTGATT 1107
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1078 ACCGTCGATTTCTGAAGTGGCGGCGATTTTGAATAGTTTGGAGAGGGAAGGAGGGTGATT 1137
Query 1108 TGGATAATTTTAAAAGTTTTGGGGTTTTAGAGATAAAAATTTGGAATT-AAGGGATATAG 1166
||||||||||||||| |||||||||||||| ||||||| || |||||| ||||| |||||
Sbjct 1138 TGGATAATTTTAAAACTTTTGGGGTTTTAGGGATAAAAGTT-GGAATTGAAGGGGTATAG 1196
Query 1167 TTGTTATTAGTTGAACAGCAACGTAAATGTTGTTTTAATGCCGTGTATATTATATAGTTT 1226
||||||||| ||| || |||||||||||||| ||||||||||||||||||||| ||||
Sbjct 1197 GTGTTATTAGGGGAAGAGAAACGTAAATGTTGTATTAATGCCGTGTATATTATATGGTTT 1256
Query 1227 T 1227
|
Sbjct 1257 T 1257
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60341055090
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5