BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494372
Length=1071
Score E
Sequences producing significant alignments: (Bits) Value
AT5G46060.1 | Symbols: | Protein of unknown function, DUF599 |... 1533 0.0
> AT5G46060.1 | Symbols: | Protein of unknown function, DUF599
| chr5:18681326-18682630 FORWARD LENGTH=1125
Length=1125
Score = 1533 bits (830), Expect = 0.0
Identities = 951/1008 (94%), Gaps = 13/1008 (1%)
Strand=Plus/Plus
Query 1 GACTCATATTAAATGAAGCAAAGTGGA-TATTCCATACGTCCAAGATTCCTCTAAAAATT 59
|||||| |||||||||||||||||||| ||||| ||||||| |||||||||||||| ||
Sbjct 1 GACTCAGATTAAATGAAGCAAAGTGGATTATTCTATACGTCTAAGATTCCTCTAAATCTT 60
Query 60 TATATCCATCTCAGTTCCTTACTCTTTATTTTATACGC--AAAATTAGAAACGTATCCAT 117
|||||||||||||||||||||||||||||||||||||| |||| || ||||||||||||
Sbjct 61 TATATCCATCTCAGTTCCTTACTCTTTATTTTATACGCAAAAAAATAAAAACGTATCCAT 120
Query 118 ATATATAAACATTTATGTGTGTGTAAGAATATATATAATAAATCAAGACAGACATTGTAG 177
|||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct 121 ATATAT-AACATTTATGTGTGTGTAAGAATATATATTATAAATCAAGACAGACATTTTAG 179
Query 178 CACAGAAGTAGAGAAAGAAAGGAAGCTGGAAGATGGAGATATTTGTGAAGAAAGAGTACT 237
|||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct 180 CACAGAAGTAGAGAAACAAAGGAA----GAAGATGGAGATATTTGTGAAGAAAGAGTACT 235
Query 238 TAGATTTGGTTCTTGTCCCATTTGGATTAATCATAGTTTTATCTTACCATCTATTTCTTC 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 236 TAGATTTGGTTCTTGTCCCATTTGGATTAATCATAGTTTTATCTTACCATCTATTTCTTC 295
Query 298 TCTATAGAATCCTCTATTTTCCTTACCACACCATTATCGGTTTCATGAACATCGATAAAT 357
||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 296 TCTATAGAATCCTTTACTTTCCTTACCATACCATTATCGGTTTCATGAACATCGATAAAT 355
Query 358 CCATTTGGGTCGACCGTATCATGCAGGCAAGAAAAGACGAATTGGGTGGTGCTTTAACTG 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 356 CCATTTGGGTCGACCGTATCATGCAGGCAAGAAAAGACGAATTGGGTGGTGCTTTAACTG 415
Query 418 TTCTTTCAAGCAGCATATCAGCTTCAACATTTATGGCGTCTATTGCTTTAACATTGAGTT 477
||||||| ||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 416 TTCTTTCGAGCAGCATATCAGCTTCAACATTTATGGCATCCATTGCTTTAACATTGAGTT 475
Query 478 CACTTATCGGCGCGTGGATCGGAAGCTCCCCGGTTAATATGACAGTTTTTACGGGAGATT 537
|||||||||||||||||||||||||||| ||||||| |||||| |||||||| ||| |||
Sbjct 476 CACTTATCGGCGCGTGGATCGGAAGCTCGCCGGTTAGTATGACTGTTTTTACCGGACATT 535
Query 538 TTGTCTATGGAGACACAAGTTCAATCACAATGGTCATCAAATACACTTCTCTCCTCATAT 597
|| ||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||
Sbjct 536 TTATCTATGGAGACACGAGTTCAATCACAATGGTCATCAAATACACATCGCTCCTCATAT 595
Query 598 GTTTCCTAGTTGCATTCTGTTGCTTTATTCAATCCACGAGATGTTTTCTACATGCGAATT 657
||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |
Sbjct 596 GTTTCCTAGTTGCATTCTGCTGTTTTATTCAATCCACGAGATGTTTTCTACATGCGAACT 655
Query 658 ATCTTATTACCACTCCCGGG-GAAGATATTCCGCCAGACATGGTGAAGAGATTTGTCTTG 716
||||||| |||||||| ||| ||||||||||| || ||||||||||||||||||||||||
Sbjct 656 ATCTTATCACCACTCC-GGGCGAAGATATTCCCCCGGACATGGTGAAGAGATTTGTCTTG 714
Query 717 AGAGGCGGTAACTATTGGTCGGTGGGTCTTAGGGCTCTTTACTTGGCTCTTGATCTACTG 776
|||||||| |||||||||||| | ||||||||||||||||| ||||||||||||||| ||
Sbjct 715 AGAGGCGGGAACTATTGGTCGCTAGGTCTTAGGGCTCTTTATTTGGCTCTTGATCTATTG 774
Query 777 TTGTGGCTTTTCGGACCGGTTCCGATGTTTATTAACTCGGTTTTGATGGTTATTTGTTTG 836
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 775 TTGTGGCTTTTCGGACCGGTTCCGATGTTTATTAACTCGGTTTTGATGGTCATTTGTTTG 834
Query 837 TATTATCTCGACTCGAACTCGGTGGCTCAGCCTCTTTATCACCGGACTTTCGAGGCGGAG 896
|||| ||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 835 TATTTTCTCGACTCAAACTCGGTGGCTCAGCCTCTTTATCACCGGACTTTTGAGGCGGAG 894
Query 897 CAAGTTGTCAAGAAGATGAGAGGAGTTTTGCCTGAACAGTTGACTTTTAGATGTAATTGA 956
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 895 CAAATTGTCAAGAAGATGAGAGGAGTTTTGCCTGAACAGTTGACTTTTAGATGTAATTGA 954
Query 957 AAAGAAAATTATTTGATTATTATTAATCAATTTGCCAACTTGAGATTT 1004
|||||||||||||||||| ||| | ||| |||||||||||| |||||
Sbjct 955 AAAGAAAATTATTTGATTCTTA--A-TCACTTTGCCAACTTGGGATTT 999
Score = 119 bits (64), Expect = 6e-26
Identities = 68/70 (97%), Gaps = 0/70 (0%)
Strand=Plus/Plus
Query 1002 TTTATCAATTATTGCATGAGATTTGAGAAAGCCGTACGGAGCATGTTCCGGGAGCGTCTT 1061
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1056 TTTATCAATTATTGCATGAGATTTGTGAAAGCCGTACGGAGCATGTTCCGGGAGCGTCTC 1115
Query 1062 GTCTTATGTT 1071
||||||||||
Sbjct 1116 GTCTTATGTT 1125
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52459569525
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5