BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494378
Length=1092
Score E
Sequences producing significant alignments: (Bits) Value
AT5G46000.1 | Symbols: | Mannose-binding lectin superfamily pr... 1384 0.0
> AT5G46000.1 | Symbols: | Mannose-binding lectin superfamily
protein | chr5:18654319-18656376 REVERSE LENGTH=1191
Length=1191
Score = 1384 bits (749), Expect = 0.0
Identities = 884/946 (93%), Gaps = 22/946 (2%)
Strand=Plus/Plus
Query 1 ATGTCAGAGAAAGTG---ATAGCTTACGGTGGTTCCAATGGACAA-AATTTTGATGATGG 56
|||||| |||||||| |||||||||||||||||||||||| || || |||||||||||
Sbjct 1 ATGTCAAAGAAAGTGACCATAGCTTACGGTGGTTCCAATGGA-AACAAATTTGATGATGG 59
Query 57 TGTTTACGAGGGTACTTACGACGGTGTGCGTAAATTGATAGTTGGAGAAGACTCTCATGG 116
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 60 TGTTTACGAGGGTACTTACGACGGTGTGCGTAAATTGATAGTTGGAGAAGACTTTCATGG 119
Query 117 CATCGTTTACCTCAAGATCCAGTACGTGAAAAACGGAGATGTAG-TGCTTAAAGAACACG 175
|||||||||||||||||||||||||||||||||||| ||||| | || ||||||||||||
Sbjct 120 CATCGTTTACCTCAAGATCCAGTACGTGAAAAACGGTGATGTCGTTG-TTAAAGAACACG 178
Query 176 GAAGAGCAAGAGGAACACATATTACAGAGACCGAGTTTGAAGTGAAGTGCCCAGACGAAT 235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 GAAGAGCAAGAGGAACACATATTACAGAGACCGAGTTTGAAGTGAAGTGCCCAGACGAAT 238
Query 236 ACATTACGTCTATTTGGGGAACATACAGAAACGATGATCACAGATACAAATCTACCGGCG 295
|||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct 239 ACATTACGTCTATTTGGGGAACATGCAGAAACGATCATCACAGATACAAATCTACCGGCG 298
Query 296 GGAGTACATCTGGACAGCTCACTCCTGCAGAAAAATACGACCTATATCTTGCTGCAAACA 355
|||| |||| || |||||||||| ||||||| ||||||||| || ||||||||||||| |
Sbjct 299 GGAGAACATTTGAACAGCTCACTGCTGCAGACAAATACGACATAAATCTTGCTGCAAAAA 358
Query 356 TGGGAAGTCCAATGTATACGAATACAGTGTCAGAGCTTCAATTCAAAACATCGCACGGGA 415
|||||| |||||||||| ||| || ||||| |||||||||||||||||||| |||||||
Sbjct 359 TGGGAACTCCAATGTATTGGAACACGGTGTCGGAGCTTCAATTCAAAACATCACACGGGA 418
Query 416 GAACCTCTGAGGAGTTTGGTATGCCCGG-ACCTGGTGGATCCAACGGGGTCTCTTGGGAT 474
|||| |||||| ||||| |||||||||| || ||| ||||||||||||||||||||||||
Sbjct 419 GAACATCTGAGCAGTTTCGTATGCCCGGTAC-TGGAGGATCCAACGGGGTCTCTTGGGAT 477
Query 475 GATGGGGCTTATGATGGTCTTAATAAATTGTGTGTTGGAGAAGATGATCATTGTGTGAGC 534
||||||||||||||| |||| | ||||||||||||||||||||||| |||||||||||||
Sbjct 478 GATGGGGCTTATGATCGTCTGAGTAAATTGTGTGTTGGAGAAGATGCTCATTGTGTGAGC 537
Query 535 TCCGTTGAGTTCCACTATGTTAAGGGAAACGACCGGATAACTCATTGTCACGGAAAGGAT 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 TCCGTTGAGTTCCACTATGTTAAGGGAAACGACCGGATAACTCATTGTCACGGAAAGGAT 597
Query 595 TCGAAAGAACATG-----G-T---TTCATCTCGTCTTTAACCTTCAAAACATCAATGAAT 645
||||||||||| | | | ||||||||||||||||| ||||||||||||||||||
Sbjct 598 TCGAAAGAACACGACAAAGATGGATTCATCTCGTCTTTAACTTTCAAAACATCAATGAAT 657
Query 646 AGAAGCTCTGAGAAATTTGGGACACCGGTTGGTACAAAATTCAAACTTGAGGCAAAAGGG 705
||||| |||||||||||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct 658 AGAAGTTCTGAGAAATTTGGGAAACCGGTTGGTACAAAATTCCAACTTGAGGCAAAAGGG 717
Query 706 CTT-GATAAGATTGTGGGGTTCCGAGGAAGGTCGTCCGTAAATCGTATCAATGCACTCGG 764
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 -TTCGATAAGATTGTGGGGTTCCGAGGAAGGTCGTCCGTAAATCGTATCAATGCACTCGG 776
Query 765 AGCAAATTTTGCGGTGGTGGTAGTTCCTCCGGTCAAGAAACTAAATGCAAAAGGTGGTGT 824
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 AGCAAATTTTGCGGTGGTGGTAGTTCCTCCGGTCAAGAAACTAAATGCAAAAGGTGGTGT 836
Query 825 CCTTGGGAAGGAGTGGGATGATGGAATTCATGACGATGTTCGAATGATAACATTCAAGCT 884
||||||||| |||||||||||||| ||||| ||||||| |||||||||||||||||||||
Sbjct 837 CCTTGGGAACGAGTGGGATGATGGGATTCACGACGATGCTCGAATGATAACATTCAAGCT 896
Query 885 CTATTTTAACAATGAATACATCACATCCGTTGAATTGGACACTATG 930
|||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct 897 CTATTTTAACAAGGAATACATCACATCCGTTGAA--GGACACTATG 940
Score = 268 bits (145), Expect = 6e-71
Identities = 145/145 (100%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 930 GTTCAATACAAACCGTACAACATATCAAGTGTTAAGTCACAGTCCAGAATACACTTACGA 989
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1017 GTTCAATACAAACCGTACAACATATCAAGTGTTAAGTCACAGTCCAGAATACACTTACGA 1076
Query 990 GGGAACATCATTCAAGCTTGAGGAGAAAGATCACAAGATTGTTGGGTTTTATGGGAAGAC 1049
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1077 GGGAACATCATTCAAGCTTGAGGAGAAAGATCACAAGATTGTTGGGTTTTATGGGAAGAC 1136
Query 1050 TGAAGTTTCTCTCAACCAAATTGGG 1074
|||||||||||||||||||||||||
Sbjct 1137 TGAAGTTTCTCTCAACCAAATTGGG 1161
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53513780970
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5