BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494379
Length=828
Score E
Sequences producing significant alignments: (Bits) Value
AT5G46020.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Casein ki... 1273 0.0
> AT5G46020.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Casein
kinase substrate, phosphoprotein PP28 (InterPro:IPR019380);
Has 30201 Blast hits to 17322 proteins in 780 species: Archae
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink). | chr5:18662846-18664874 REVERSE LENGTH=969
Length=969
Score = 1273 bits (689), Expect = 0.0
Identities = 798/846 (94%), Gaps = 25/846 (3%)
Strand=Plus/Plus
Query 1 AAAAATCCACACTGAAACAAAGAATCCCCAAATCCACAGGTGGCTTTAGGGTTTTCGTCT 60
||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AAAAATCCACACTCAAAGAAAGAATCCCCAAATCCACAGGTGGCTTTAGGGTTTTCGTCT 60
Query 61 CTTT-ACTCGTAACCGGAAGAGAGGAGGACAAGATCCTCCACTAATTTCACAAAAAGCTA 119
|||| |||||||||||| | ||| |||||||||||||||||||||||||||||||||||
Sbjct 61 CTTTCACTCGTAACCGG-A-AGA-GAGGACAAGATCCTCCACTAATTTCACAAAAAGCTC 117
Query 120 ATCTTTTTATTCGCTTTCGAAACGATTCGTTTTCTGGGTTTCAAGAATCAAATTCTCTGG 179
||||||||||||| ||||||| ||||||||| |||||| |||||| ||||||||||||||
Sbjct 118 ATCTTTTTATTCGTTTTCGAATCGATTCGTTATCTGGG-TTCAAGTATCAAATTCTCTGG 176
Query 180 TTTCGTTTTTCGTTTTCTTGATTTGTTCTCTCTCTTTCGGAAAAA--------------- 224
|||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct 177 TTTCGTTTTTCG-TTT-TTGATTTGTTCTCTCTCTTTCGGAAAAAGTTTGGTTTTTTTTT 234
Query 225 -GTTTGCAACGATGGGAAGAGGCAAGTTCAAGGGTAAACCTACCGGCCAACGCCGATTCT 283
||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 235 TGTTTGAAACAATGGGAAGAGGCAAGTTCAAGGGTAAACCTACCGGCCAACGCCGATTCT 294
Query 284 CTAGTGCTGCCGATATTCTTGCTGGTACATCTGCTGCACGTCCTCGATCATTCAAACAGA 343
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 295 CTAGTGCTGCTGATATTCTTGCTGGCACATCTGCTGCACGTCCTCGATCATTCAAACAGA 354
Query 344 AAGAAGCTGAATACGAAGAAGATGTTGAAGACGAGTCAGAGGAGGAATCTGAAGAAGAAT 403
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 355 AAGAAGCTGAGTACGAAGAAGATGTTGAAGAAGAGTCAGAGGAGGAATCTGAAGAAGAAT 414
Query 404 CCGAAGATGACGCTGATGTGAAGAAGAAAGGAGCTGAAGCTGTTATCGAAGTTGATAATC 463
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 415 CCGAAGATGAAGCTGATGTGAAGAAGAAAGGAGCTGAAGCTGTTATCGAAGTTGATAACC 474
Query 464 CTAACAGAGTAAAAGC-AAAGACCTTGAAAGCAAGAGACCTCGATGCTAGTAAAACCACT 522
|||||||||||| | | ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 475 CTAACAGAGTAAGA-CAAAAGACCTTGAAAGCAAAAGACCTCGATGCTAGTAAAACCACT 533
Query 523 GAACTCTCAAGGCGTGAAAGAGAGGAGCTAGAGAAGCAGCGAGCTCATGAGCGATACATG 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 534 GAACTCTCAAGGCGTGAAAGAGAGGAGCTAGAGAAGCAGCGAGCTCATGAGCGATACATG 593
Query 583 AGGTTGCAAGAGCAAGGCAAAACCGAACAAGCAAGAAAGGACTTGGATCGTTTGGCTCTG 642
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 594 AGGTTGCAAGAGCAAGGCAAAACCGAACAAGCAAGGAAGGACTTGGATCGTTTGGCTCTG 653
Query 643 ATTCGCCAACagagagaagaagctgccaagaagcgagaagaggaaaaagctgcaagagac 702
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 654 ATTCGCCAACAGAGAGAAGAAGCTGCCAAGAAGCGAGAAGAGGAAAAAGCCGCAAGAGAC 713
Query 703 gctaagaaagtcgaagGGCGCAAATGAGAAGTGATCACACTCAAAAGACCTACCTTCTAT 762
||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 714 GCTAAGAAAGTCGAAGGGCGCAAATGAGAAGTGATCACACTCAAAAGACCTGCCTACTAT 773
Query 763 GCAATTAAGATGTGTTGTTTTTACTTTGTTCTTTTTCGATTGATAAAAGATAAAACTTCT 822
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 774 GCGATTAAGATGTGTTGTTTTTACTTTGTTCTTTTTCGATTGATAAAAGATAAAACCTCT 833
Query 823 GCTATT 828
||||||
Sbjct 834 GCTATT 839
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40338020041
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5