BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494381
Length=727
Score E
Sequences producing significant alignments: (Bits) Value
AT5G45970.1 | Symbols: ARAC2, RAC2, ROP7, ATRAC2, ATROP7 | RAC-... 1075 0.0
> AT5G45970.1 | Symbols: ARAC2, RAC2, ROP7, ATRAC2, ATROP7 | RAC-like
2 | chr5:18643734-18645966 FORWARD LENGTH=841
Length=841
Score = 1075 bits (582), Expect = 0.0
Identities = 652/686 (95%), Gaps = 4/686 (1%)
Strand=Plus/Plus
Query 1 ACAGAAGCAAAGAAAATGAGCACAGCAAGATTCATTAAGTGTGTGACTGTCGGAGATGGA 60
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 13 ACAAAAGCAAAGAAAATGAGCACAGCAAGATTCATTAAGTGTGTGACTGTCGGAGATGGA 72
Query 61 GCAGTAGGAAAGACTTGTATGCTAATTTCATATACCAGCAATACTTTTCCTACGGATTAT 120
||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 73 GCAGTGGGAAAGACTTGTATGCTCATTTCATATACCAGCAATACGTTTCCTACGGATTAT 132
Query 121 GTTCCAACAGTTTTCGACAATTTCAGCGCAAATGTGGTGGTCGACGGGAGTACCGTGAAC 180
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 133 GTTCCAACAGTTTTCGACAACTTCAGCGCAAATGTGGTGGTCGACGGGAGTACCGTGAAC 192
Query 181 CTCGGCCTGTGGGATACTGCCGGGCAGGAAGATTATAATAGACTTAGGCCTCTGAGTTAC 240
|| |||||||||||||||||||| ||||||||||||||||| ||||||||| ||||||||
Sbjct 193 CTTGGCCTGTGGGATACTGCCGGTCAGGAAGATTATAATAGGCTTAGGCCTTTGAGTTAC 252
Query 241 AGAGGAGCAGATGTGTTTTTATTAGCATTTTCCCTTATTAGCAAGGCCAGTTACGAGAAT 300
|||||||||||||| || |||||||||||||||||||| |||||||||||||||||||||
Sbjct 253 AGAGGAGCAGATGTCTTCTTATTAGCATTTTCCCTTATAAGCAAGGCCAGTTACGAGAAT 312
Query 301 ATTCACAAAAAGTGGCTTCCGGAGCTGAAACATTATGCGCCTAGCATCCCCATTGTGCTC 360
|||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 313 ATTCACAAAAAGTGGCTTCCGGAGCTGAAACATTATGCTCCTGGCATCCCCATTGTGCTC 372
Query 361 GTCGGTACAAAATTAGATTTGAGGGATGATAAGCAGTTCTTGAAGGATCATCCTGGAGCA 420
||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 373 GTCGGAACAAAATTAGATTTGAGGGATGACAAGCAGTTCTTGAAGGATCATCCAGGAGCA 432
Query 421 G-TATCTATAACAACTGCTCAGGGAGAAGAATTAAGGAAGATGATTGGAGCCGTAAGGTA 479
| | ||||||||||||||||||||||||||||||||||| ||||||||||| || |||||
Sbjct 433 GCT-TCTATAACAACTGCTCAGGGAGAAGAATTAAGGAAAATGATTGGAGCTGTTAGGTA 491
Query 480 CTTAGAGTGCAGCTCCAAAACCCAACAGAATGTGAAGGCAGTGTTTGATACAGCGATAAG 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 492 CTTAGAGTGCAGCTCCAAAACCCAACAGAATGTGAAGGCAGTGTTTGATACAGCGATAAG 551
Query 540 GGTAGCTTTGAGGCCACCAAAGGCAAAGAATAAGATAAAACCATTGAAGACTAAGAGATC 599
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 552 GGTAGCTTTGAGGCCACCAAAGGCAAAGAAAAAGATAAAACCATTGAAGACTAAGAGATC 611
Query 600 AAGATTATGCTTTTTCCTCTAATATTTGAACAAATTTAAATAAATaaaaaaaaCATTTAC 659
|||| ||||||||||||| |||||| |||||| |||| ||||||||| ||| ||||||
Sbjct 612 AAGAATATGCTTTTTCCTATAATATCTGAACAGATTTCAATAAATAACAAA--CATTTAT 669
Query 660 ATATACATGTATTTCGATAttttttt 685
|||||| ||||||| |||||||||||
Sbjct 670 ATATACTTGTATTTTGATATTTTTTT 695
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35264371194
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5