BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494382
Length=1276
Score E
Sequences producing significant alignments: (Bits) Value
AT5G45960.1 | Symbols: | GDSL-like Lipase/Acylhydrolase superf... 1892 0.0
> AT5G45960.1 | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily
protein | chr5:18637023-18640361 REVERSE LENGTH=1321
Length=1321
Score = 1892 bits (1024), Expect = 0.0
Identities = 1202/1286 (93%), Gaps = 19/1286 (1%)
Strand=Plus/Plus
Query 1 ATGAGAAatcatcacacacattcttcttcgtctttttccttcatcatcttcctcttcctg 60
||||||| |||||||| ||||| |||||| | | ||||||||||| ||||||| ||||||
Sbjct 43 ATGAGAAGTCATCACAGACATTTTTCTTCATATGTTTCCTTCATCCTCTTCCTATTCCTG 102
Query 61 ttcttcatctccttctcattctcaACATCAAAACTCGAACCCGC-AA-----AACCTAAA 114
||||||||||||||||||| |||||||||||||||||||||||| || ||||||||
Sbjct 103 TTCTTCATCTCCTTCTCATCCTCAACATCAAAACTCGAACCCGCAAAGTCTGAACCTAAA 162
Query 115 AGAAAACATTCAGTTTCAGCTATTCTCGTGTTCGGAGATTCAACCGTGGATCCAGGAAAT 174
|||||||||||||||||||||||||||||||||||||||||||| |||||||| || |||
Sbjct 163 AGAAAACATTCAGTTTCAGCTATTCTCGTGTTCGGAGATTCAACAGTGGATCCGGGCAAT 222
Query 175 AACAACTACATCGACACAATATTCAAGTGTAATTTTCCGCCCTATGGACAAGATTTCAAA 234
||||||||||| |||||| |||||||||||||||||||||||||||||| ||||||| |
Sbjct 223 AACAACTACATTGACACAGTATTCAAGTGTAATTTTCCGCCCTATGGACTCGATTTCAGA 282
Query 235 AACAAAATTCCCACCGGTAGATTTTGCAACGGTCGACTCGTCACAGATTTCATTGCTTCA 294
||||||| ||| |||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 283 AACAAAACTCCGACCGGTAGATTTTGCAACGGTCGACTCGTCACAGATTTTATCGCTTCA 342
Query 295 TACATTGGTGTGAAGGAGAATGTGCCACCATATTTGGACCCAAATCTTGGAGTAAATGAG 354
||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct 343 TACATTGGTGTGAAGGAGAATGTGCCACCGTATTTGGACCCAAATCTTGGAATAAATGAG 402
Query 355 CTAATAAGTGGAGTTAGCTTTGCTTCAGCTGGTTCTGGATATGATCCTCTCACTCCAACC 414
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 403 TTAATAAGTGGAGTTAGCTTTGCTTCAGCTGGCTCTGGATATGATCCTCTCACTCCAACC 462
Query 415 ATTACTAACGTGATAGACATTCCGACTCAGCTTGAGTATTTCAGAGAGTACAAGAGAAAA 474
|| ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 463 ATAACTAACGTGATAGACATTCCGACTCAGCTAGAGTATTTCAGAGAATACAAGAGAAAA 522
Query 475 TTGGAGATTaaaatgggaaaacaaaaaatggaaaaaCACATAGAAGAAGCTTTGTTTTGT 534
|||||| |||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 523 TTGGAGGGTAAAATGGGAAAACAAGAAATGGAAAAACACATAGAAGAAGCTATGTTTTGT 582
Query 535 GTAAGTGCAGGAACCAACGATTTCGTCATTAATTATTTCACAATTCCCATACGAAGGAAG 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 583 GTAAGTGCAGGAACCAACGATTTCGTCATTAATTATTTCACAATTCCCATACGAAGGAAG 642
Query 595 ACTTTCACTGTCGAAGCTTATCAAAAATTCGTTATTTCCAATCTCAAGCAATTTATTCAG 654
||||| ||| |||||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 643 ACTTTTACTATCGAAGCTTATCAACAATTCGTTATTTCCAATCTCAAGCAATTTATCCAG 702
Query 655 GGTTTATGGAAAGAAGGAGCAAGAAAGATAACAGTGGCTGGTATACCACCGATTGGGTGT 714
||||| |||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 703 GGTTTGTGGAAAGAAGGAGCAAGAAAGATAACAGTGGCAGGTTTACCACCGATTGGGTGT 762
Query 715 TTGCCGATTGTTATAACATTATTCTCCGGCGAAGCATTGACCAACCGTCGTTGCATTGAC 774
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 763 TTGCCGATTGTTATAACATTATTCTCCGGCGAAGCATTGACCAACCGTCGTTGCATTGAC 822
Query 775 CGTTTCTCCACCGTGGCCACAAACTACAATTTCCTCTTACAAAATA-AATTGGGCCTCAT 833
||||||||||| |||||||||||||||||||||||||||||||| | |||||| ||||||
Sbjct 823 CGTTTCTCCACTGTGGCCACAAACTACAATTTCCTCTTACAAAA-ACAATTGGCCCTCAT 881
Query 834 GCAAATGAGTTTGGCCCATCTTGGGTCCAAAATCTTTTACCTCGACGTCTATAACCCAGT 893
|||| || |||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 882 GCAAGTGGGTTTGGCCCATCTTGGATCCAAAATCTTTTACCTCGACGTCTATAACCCAGT 941
Query 894 CTATGAGGTCATTCATGACCCTAGAAAATTTGGGTTTAAGGAAGTGTTCAGTGGATGTTT 953
||||||||||||| ||||||| ||||||| ||||| ||||||| |||||||||||||
Sbjct 942 TTATGAGGTCATTCGTGACCCTCGAAAATTCGGGTTCGAGGAAGTCTTCAGTGGATGTTG 1001
Query 954 TGGAAGTGGATACCTAGAGGCATCGTTTTTGTGTAACCCAAAGTCATATGTGTGTTCCAA 1013
|||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct 1002 TGGAAGTGGATACCTAGAGGCATCGTTTTTGTGTAATCCAAAGTCATATGTGTGTCCCAA 1061
Query 1014 TACATCTGCTTATGTCTTTTTTGA-TCCTATCCATCCAAGTGAGAAGACTTACTTCAGTC 1072
|||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||
Sbjct 1062 TACATCTGCTTATGTCTTCTTTGACTC-TATCCATCCAAGTGAGAAGACTTACTTCAGTC 1120
Query 1073 TTTTTAGATCTCTCCGACCAATTTATGATTCTATTCTCGGTTGTTTCTGAGATTTT-AAT 1131
|||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |||
Sbjct 1121 TTTTTAGATCTCTCCGACCAATTTATGATTCTATTCTCGGTTCTTTCTGAAATTTTTAAT 1180
Query 1132 TATTATTATGATCAATATTAGTTAATTGATAAGTTAATTTCAATATACAGATACACTTTT 1191
|| ||||||||||| |||||| |||||||||||||||||||||| |||| ||||| | |
Sbjct 1181 TAATATTATGATCACTATTAGCTAATTGATAAGTTAATTTCAATTTACA--TACACCTCT 1238
Query 1192 TTCTTCCATTTTGAGTG-CTGAAATGTAATGATGGTCTATATATGTGTTAATATTTCAGT 1250
|||||||||| |||||| | ||||||||||| |||||||| ||||||||||||||||
Sbjct 1239 TTCTTCCATTATGAGTGAC-GAAATGTAATGTTGGTCTAT----GTGTTAATATTTCAGT 1293
Query 1251 TTGAAATGCAAAATAATTAGTGTACT 1276
||||||||||||||||||||||||||
Sbjct 1294 TTGAAATGCAAAATAATTAGTGTACT 1319
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62750681250
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5