BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494383
Length=1242
Score E
Sequences producing significant alignments: (Bits) Value
AT5G45950.1 | Symbols: | GDSL-like Lipase/Acylhydrolase superf... 1912 0.0
> AT5G45950.1 | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily
protein | chr5:18634079-18636699 FORWARD LENGTH=1337
Length=1337
Score = 1912 bits (1035), Expect = 0.0
Identities = 1154/1211 (95%), Gaps = 9/1211 (1%)
Strand=Plus/Plus
Query 1 AAAAGTCTCACATTCTCTCTATCAATTAAACATGTTGCTTGTAGCGTTTGTGACTCTTTT 60
||||||| |||||||||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct 46 AAAAGTCACACATTCTCTCTATTAATTAAACATGTTGCTTGTTGCGTTTGTGACTCTTTT 105
Query 61 GGTAGCAGTAGCTTTGCAGCCGCTACCTG-CAGTGATGGCTTTGGACGTTCACCTTCTCC 119
||||||||||||||||||||| ||||| | ||||| || ||||||||||||||||||| |
Sbjct 106 GGTAGCAGTAGCTTTGCAGCCACTACC-GTCAGTGTTGTCTTTGGACGTTCACCTTCTTC 164
Query 120 GGCAGCTAGCCGCGAAGCACAATGTGACATCAATACTTGTGTTTGGAGATTCTAGTGTCG 179
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 165 GGCAGCTAGCCGCAAAGCACAATGTGACATCGATACTTGTGTTTGGAGATTCTAGTGTCG 224
Query 180 ATCCAGGAAACAATAATTTCATTAAAACCGAAATGAAAGGAAATTTTCCACCTTATGGTG 239
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 225 ATCCAGGGAACAATAATTTCATTAAAACCGAAATGAAAGGGAATTTTCCACCTTATGGTG 284
Query 240 AAAATTTCATCAACCATAAACCCACCGGTAGATTATGCGATGGATTACTCGCTCCCGATT 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 285 AAAATTTCATCAACCATAAACCCACCGGTAGATTATGCGATGGATTACTCGCTCCCGATT 344
Query 300 ATATTGCGGAGGCCATGGGTTACCCTCCCATACCGGCTTTTCTTGATCCAACCCTAACCC 359
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 345 ATATTGCGGAGGCCATGGGTTACCCTCCCATACCGGCTTTTCTTGATCCATCCCTAACCC 404
Query 360 AAGCTGATCTAACCCGCGGTGCAAGTTTTGCCTCTGCTGGTTCTGGCTATGACGATCTCA 419
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 405 AAGCTGATCTAACTCGCGGTGCAAGTTTTGCCTCTGCTGGTTCTGGCTATGACGATCTCA 464
Query 420 CAGCTAATATATCAAACGTGTGGAGTTTCACTACACAAGCCAATTACTTTTTGCATTACA 479
||||||||||||||||||| |||||||||||||||||||||||||||||| | |||||||
Sbjct 465 CAGCTAATATATCAAACGTATGGAGTTTCACTACACAAGCCAATTACTTTCTACATTACA 524
Query 480 AGATTCACCTGACTAAACTGGTCGGTCCAATAGAGAGCTCGAAAATGATAAATAATGCGA 539
||||||| ||||||||| ||||||||||| |||||||| | ||||||||||||||||| |
Sbjct 525 AGATTCATCTGACTAAATTGGTCGGTCCATTAGAGAGCGCTAAAATGATAAATAATGCTA 584
Query 540 TATTTCTTATGAGTATGGGATCAAATGACTTTCTTCAAAATTACTTGGTCGATTTTACTC 599
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 585 TATTTCTTATGAGTATGGGATCAAATGACTTTCTTCAAAATTACTTAGTCGATTTTACTC 644
Query 600 GACAAAAGCAATTCACGGTAGAGCAATACATCGAGTTTCTGTCCCACCGTATGCTTTACG 659
||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 645 GACAAAAGCAATTCACGGTTGAGCAATACATCGAGTTTCTCTCCCACCGTATGCTTTACG 704
Query 660 ACGCCAAGATGTTGCATAGGCTCGGAGCTAAAAGGTTGGTGGTGGTGGGAGTTCCTCCCA 719
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 705 ACGCCAAGATGTTGCATAGGCTTGGAGCTAAAAGGTTGGTGGTAGTGGGAGTTCCTCCCA 764
Query 720 TGGGATGCATGCCTTTAATCAAATACCTAAGAGGCCAAAAAACTTGCGTAGATCAACTAA 779
||||||||||||||||||| ||||||||| |||||||||||||||| |||||||||||||
Sbjct 765 TGGGATGCATGCCTTTAATTAAATACCTACGAGGCCAAAAAACTTGTGTAGATCAACTAA 824
Query 780 ACCAAATCGCTTTCTCCTTTAACTCCAAAATAATCAAGAATCTAGAGCTTCTCCAGTCTA 839
||||||||||||||||||||||| ||||||| ||||| |||||||||||||| |||||||
Sbjct 825 ACCAAATCGCTTTCTCCTTTAACGCCAAAATCATCAAAAATCTAGAGCTTCTTCAGTCTA 884
Query 840 AATTCGGTCTGAAAACCATCTACGTTGATGCCTATTCGGCCATCCAAGAAGCCATTAAAA 899
|| ||||| |||||||||||||||||||||| |||||| |||||||||||||||||||||
Sbjct 885 AAATCGGTTTGAAAACCATCTACGTTGATGCTTATTCGACCATCCAAGAAGCCATTAAAA 944
Query 900 ATCCTAGAAAATATGGTTTCGTCGAGGCTTCACTAGGCTGTTGTGGAACAGGTACATACG 959
|||| ||||||| |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 945 ATCCGAGAAAATTTGGTTTCGTCGAGGCTTCGCTAGGCTGTTGTGGAACAGGTACATACG 1004
Query 960 AATATGGAGAGACATGCAAAGATATGCAAGTATGCAAAGATCCTACCAAATACGTTTTTT 1019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1005 AATATGGAGAGACATGCAAAGATATGCAAGTATGCAAAGATCCTACCAAATACGTTTTTT 1064
Query 1020 GGGACGCTGTCCATCCAACACAAAGAATGTATCAAATCATTGTTAAGAAGGCAATTGCAT 1079
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1065 GGGACGCTGTCCATCCAACACAAAGAATGTATCAAATCATTGTTAAGAAGGCAATCGCAT 1124
Query 1080 CCATTAGTGAAGAGTTTCTTGTTTAGAAATATTATATATTCATATT--ACTATCATGATT 1137
|||| |||||||||||||||||||||||||||||||| || |||| ||||||||||||
Sbjct 1125 CCATCAGTGAAGAGTTTCTTGTTTAGAAATATTATATGTTTGTATTTTACTATCATGATT 1184
Query 1138 TATATGAACAATTCTAAGATGTAATTGAAAAAG-ATTCAAAATGTTAAATTTAATGGTTC 1196
||| ||| ||||||| |||||||||||||| | ||||||||||||||||||||||||||
Sbjct 1185 TAT--GAAAAATTCTA-GATGTAATTGAAAA-GCATTCAAAATGTTAAATTTAATGGTTC 1240
Query 1197 AAATCTTCTAC 1207
||||| |||||
Sbjct 1241 AAATCATCTAC 1251
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61043862720
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5