BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494385
Length=783
Score E
Sequences producing significant alignments: (Bits) Value
AT5G45940.1 | Symbols: atnudt11, NUDT11 | nudix hydrolase homol... 1151 0.0
> AT5G45940.1 | Symbols: atnudt11, NUDT11 | nudix hydrolase homolog
11 | chr5:18629562-18630691 REVERSE LENGTH=866
Length=866
Score = 1151 bits (623), Expect = 0.0
Identities = 736/789 (93%), Gaps = 14/789 (2%)
Strand=Plus/Plus
Query 1 TCTCTGTTAATATGTCTTCAACAACAACTACAGATTCTACAGAATTGCAAAATCTGATCA 60
||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 84 TCTCTGTTAATATGTCTTCAACAAC-A--ACAGATTCTACAGAATTGCAAAATCTGATCA 140
Query 61 AAC-GATTTCAAAATTACGAAACTCATCTTCGTCAACATTTACCTCCAAAATCTTCAGCT 119
||| | |||||||||| | ||||||||| |||||||||||| ||| ||||||||||||||
Sbjct 141 AACTG-TTTCAAAATTGCCAAACTCATCCTCGTCAACATTTTCCTGCAAAATCTTCAGCT 199
Query 120 GTCTTAGTTTGTCTATACCAAGAACAAAGAGAAGACAAAAACGAGCTACGTGTAATCTTA 179
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 200 GTATTAGTTTGTCTATACCAAGAACAAAGAGAAGACAAAAACGAGCTACGCGTAATCTTA 259
Query 180 ACCAAACGCTCCT-CTACTCTCTCTTCTCATCCTGGGGAAGTAGCATTGCCTGGAGGAAA 238
|||||||| | || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 260 ACCAAACGAT-CTACTACTCTCTCTTCTCATCCTGGGGAAGTAGCATTGCCTGGAGGAAA 318
Query 239 AAGAGACGAGGAAGATAAAGATGATATATCTACCGCGTTGAGAGAAGCTCGTGAAGAAAT 298
||||||| | |||||||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct 319 AAGAGACCAAGAAGATAAAGATGATATAGCTACTGCGTTGAGAGAAGCTCGTGAAGAAAT 378
Query 299 CGGTTTAGATCCTTCTCTTGTTACAATCATTTCTGTTCTTGAACCATTTGTTAACAAGAA 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 379 CGGTTTAGATCCTTCTCTTGTTACAATCATTTCTGTTCTTGAACCATTTGTTAACAAGAA 438
Query 359 GGGAATGTCGGTTGTACCAGTTATCGGTTTTCTACTCGATAAGAAAGCGTTTAAACCGTT 418
|||||||||||| | |||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 439 GGGAATGTCGGTAGCACCAGTTATCGGTTTTCTACACGATAAGAAAGCGTTTAAACAGTT 498
Query 419 ACCAAATCCAGCTGAAGTGGAAGAAATCTTCGATGTTCCGTTGGAAATGTTCCTCAAGGA 478
|||||||||||||||||||||||| ||||| ||||| || || || ||||||||||||||
Sbjct 499 ACCAAATCCAGCTGAAGTGGAAGAGATCTTTGATGTGCCATTAGAGATGTTCCTCAAGGA 558
Query 479 CAAGAA-CAGGCG-GACTGAGGAACGAGAGCATGAAGGAGAGAGATACCTTCTTCAATAC 536
|| ||| |||||| | | ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 559 CA-GAAACAGGCGAG-CAGAGGAACGAGAGCATGAAGGAGAGAGATATCTTCTTCAATAC 616
Query 537 TTCGATTACTATTCCGAAGATAAAGAGAGAAACTTTATCATATGGGCACTCACTGCTGGT 596
|| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 617 TTTGATTACTATTCCGAAGATAAAGAGAGAAGCTTTATCATATGGGCACTCACTGCTGGT 676
Query 597 ATTCTCATCAGAGTTGCCTCCATTGTTTATCAGAGATCACCAGAGTTTCAAGAACGTAAG 656
||||| ||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 677 ATTCTGATCAGAGTTGCCTCCATTGTTTATCAGAGATTACCGGAGTTTCAAGAACGTAAA 736
Query 657 CCAAGATTCTGGAATCAGCCCAACTGATTCTTAACTTGATCTGATTGAAAAAAT-GAAAC 715
|| || |||||||||||||| ||||||||||| ||||||||||||||| ||||| |||||
Sbjct 737 CCGAGTTTCTGGAATCAGCCTAACTGATTCTTGACTTGATCTGATTGAGAAAATTGAAAC 796
Query 716 TTTCATGTATAATAAGCAATACAAGAC-GAATCTTCTTTAAATGTGTTGCAAGAATCTAT 774
||| ||||||||||||| ||||| || |||||||||||||||||||| |||||||||||
Sbjct 797 TTTTATGTATAATAAGCGATACA-GATTGAATCTTCTTTAAATGTGTTTCAAGAATCTAT 855
Query 775 CTTTACTCT 783
|||||||||
Sbjct 856 CTTTACTCT 864
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38077483426
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5