BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494386
Length=1361
Score E
Sequences producing significant alignments: (Bits) Value
AT5G45930.1 | Symbols: CHLI2, CHL I2, CHLI-2 | magnesium chelat... 2089 0.0
AT4G18480.1 | Symbols: CHLI1, CH42, CH-42, CHL11, CHLI-1 | P-lo... 1020 0.0
> AT5G45930.1 | Symbols: CHLI2, CHL I2, CHLI-2 | magnesium chelatase
i2 | chr5:18628007-18629697 FORWARD LENGTH=1477
Length=1477
Score = 2089 bits (1131), Expect = 0.0
Identities = 1289/1365 (94%), Gaps = 12/1365 (1%)
Strand=Plus/Plus
Query 1 CAACACAAAACGAATTCTCAAAGAGAAAGAGAC-GAAATC-AGAAATCTATAGAGAGAGC 58
||||| ||||||||||||| |||||||||| || |||||| | |||||||| |||||||
Sbjct 18 CAACAAAAAACGAATTCTCGAAGAGAAAGACACTGAAATCGAAAAATCTAT--AGAGAGC 75
Query 59 TCCCACTCACTAACAATGGCGTCTCTTCTCGG-AGCATCTCCTTCTTCAATCTTCACTTG 117
| ||||||||| ||||||||||||||||||| || |||||||||||||||||| || ||
Sbjct 76 T--CACTCACTAGCAATGGCGTCTCTTCTCGGAAG-ATCTCCTTCTTCAATCTTGACCTG 132
Query 118 CCCTCGTCTTTCTTCTCCTTCCTCAACATCTTCTATCTCCCCTGTCTGCTTCGGACCAGG 177
||||||| ||||||||||||||||||||||||| || |||| | |||||||||||||||
Sbjct 133 CCCTCGTATTTCTTCTCCTTCCTCAACATCTTCAATGTCCCATCTCTGCTTCGGACCAGA 192
Query 178 GAGAA-TTTGTGGAAGAATCCAATTCAATCCAAAGAAGAACAGATCTCGTTACCATGTTT 236
|| || ||| |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 193 GA-AACTTTCTGGAAGAATCCAATTCAATCCAAAGAAGAACAGATCTCGTTACCATGTCT 251
Query 237 CTGTTATGAATGTCGCTACAGAGATCAACTATGTTGAACAAGGAAAGAAGTTTGATTCAA 296
|||||||||||||||||||||||||||||| ||||||||||| ||||||| |||||||||
Sbjct 252 CTGTTATGAATGTCGCTACAGAGATCAACTCTGTTGAACAAGCAAAGAAGATTGATTCAA 311
Query 297 AGGAAAGTGCGAGGCCGGTTTATCCATTTGCTGCTATTGTTGGACAAGATGAGATGAAGC 356
|||||||||| || || |||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 312 AGGAAAGTGCAAGACCTGTTTATCCGTTTGCTGCTATAGTTGGACAAGATGAGATGAAGC 371
Query 357 TATGCCTTTTGTTAAATGTGATTGACCCGAAGATTGGCGGTGTGATGATAATGGGAGATA 416
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 372 TATGCCTTTTGTTAAATGTGATTGACCCGAAGATAGGTGGTGTGATGATAATGGGAGATA 431
Query 417 GAGGAACTGGTAAATCAACAACTGTTAGATCTTTAGTTGATTTGCTTCCTGAGATCACGG 476
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 432 GAGGAACTGGTAAATCAACAACTGTTAGATCTTTAGTTGATTTGCTTCCTGAGATCACTG 491
Query 477 TTGTTGCTGGTGATCCGTATAACTCAGACCCGAGAGATCCCGAGTGTATGGGAAAGGAAG 536
||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 492 TTGTTTCTGGTGATCCGTATAACTCAGACCCGAGAGATCCTGAGTGTATGGGAAAGGAAG 551
Query 537 TAAGGGAGAAAGTTCAAAAGGGAGAACAATTGCCGGTTATCGAAACCAAAATCAATATGG 596
|||| ||||||||||||||||||||| ||||| | ||||| |||||||||||||||||||
Sbjct 552 TAAGAGAGAAAGTTCAAAAGGGAGAAGAATTGTCTGTTATTGAAACCAAAATCAATATGG 611
Query 597 TTGATCTTCCTTTAGGTGCTACGGAAGATAGAGTTTGCGGAACTATTGATATCGAAAAAG 656
||||||||||||| |||||||| |||||||||||||| |||||||||||||||||||| |
Sbjct 612 TTGATCTTCCTTTGGGTGCTACTGAAGATAGAGTTTGTGGAACTATTGATATCGAAAAGG 671
Query 657 CCTTAACTGAAGGTGTTAAGGCGTTTGAGCCTGGACTACTAGCTAAAGCCAATAGAGGGA 716
| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 672 CTTTAACCGAAGGTGTTAAGGCGTTTGAGCCTGGACTACTAGCTAAAGCTAATAGAGGGA 731
Query 717 TTCTTTATGTTGATGAAGTTAATCTCTTGGATGATCATTTAGTTGATGTTCTTCTTGATT 776
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 732 TTCTTTATGTTGATGAAGTTAATCTTTTGGATGATCATTTAGTTGATGTTCTTCTTGATT 791
Query 777 CTGCTGCATCGGGTTGGAACACTGTTGAAAGAGAAGGGATTTCGATTTCTCACCCTGCTC 836
| |||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 792 CAGCTGCATCTGGTTGGAACACTGTTGAAAGAGAAGGGATATCGATTTCTCATCCTGCTC 851
Query 837 GGTTTATCCTAATTGGTTCAGGAAATCCTGAAGAAGGAGAGCTTAGACCACAGCTTCTTG 896
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 852 GGTTTATCCTCATTGGTTCAGGAAATCCTGAAGAAGGAGAGCTTAGACCACAGCTTCTTG 911
Query 897 ATAGGTTTGGTATGCACGCGCAAGTAGGGACAGTTAGGGACGCCGAGCTAAGAGTCAAGA 956
| ||||||||||||||||||||||||||||| ||||| ||||||||||| ||||| ||||
Sbjct 912 ACAGGTTTGGTATGCACGCGCAAGTAGGGACGGTTAGAGACGCCGAGCTGAGAGTTAAGA 971
Query 957 TTGTTGAAGAACGAGCTCGTTTTGATAGTAACCCAAAGGAGTTTCGAGAATCTTATCAAG 1016
|||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct 972 TTGTTGAAGAACGAGCTCGTTTCGATAGTAACCCAAAGGAGTTTCGAGAAACTTATCAAG 1031
Query 1017 CAGAACAACTGAAGCTTCAAGAGCAGATTACAACTGCAAGAAGCAATCTTTCTGCAGTTC 1076
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1032 AAGAACAACTGAAGCTTCAGGAGCAGATTACAACTGCAAGAAGCAATCTTTCTGCAGTTC 1091
Query 1077 AGATTGATCAAGATTTGAAAGTGAAGATCTCTAAGGTCTGTGCTGAGCTGGACGTTGACG 1136
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1092 AGATTGATCAAGATTTGAAAGTGAAGATCTCTAAGGTCTGTGCTGAGCTGGACGTTGATG 1151
Query 1137 GATTGAGAGGAGACATGGTGATAAACAGAGCGGCTAGAGCACTTGCGGCACTCCAAGGAA 1196
||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||
Sbjct 1152 GATTGAGAGGAGACATGGTGATAAACAGAGCAGCTAGAGCGCTTGCAGCACTCCAAGGAA 1211
Query 1197 GAGATCAAGTTACAGCTGAAGATGTTGGTATTGTTATACCGAACTGCTT-ACGACACAGA 1255
||||||||||||||||||||||||||||||||||||||||||| || || | ||||||||
Sbjct 1212 GAGATCAAGTTACAGCTGAAGATGTTGGTATTGTTATACCGAATTGTTTGA-GACACAGA 1270
Query 1256 CTCAGAAAAGATCCATTGGAGTCTATGGATTCGGGAATTCTCGTTACCGAGAAGTTCTAC 1315
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1271 CTCAGAAAAGATCCATTGGAGTCTATGGATTCGGGAATTCTCGTTACCGAGAAGTTCTAT 1330
Query 1316 GAGGTTTTCAGTTAGAGTAAAGATAGATTCTTGAAACAAATTTAA 1360
|||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct 1331 GAGGTTTTCACTTAGAGTAAAGATAGATTCTTGAAACACATTTAA 1375
> AT4G18480.1 | Symbols: CHLI1, CH42, CH-42, CHL11, CHLI-1 | P-loop
containing nucleoside triphosphate hydrolases superfamily
protein | chr4:10201672-10203469 REVERSE LENGTH=1608
Length=1608
Score = 1020 bits (552), Expect = 0.0
Identities = 1061/1300 (82%), Gaps = 61/1300 (5%)
Strand=Plus/Plus
Query 66 CACTAACAATGGCGTCTCTTCTCGGAGCATCTCCTTCTTCAATCTTCACTTGC-CC-TCG 123
||| || ||||||||||||||| ||| ||||| ||||| |||||| ||| | || ||
Sbjct 102 CAC-AAAAATGGCGTCTCTTCTTGGAACATCTTCTTCTGCAATCTGGGCTT-CTCCTTC- 158
Query 124 TCTTTCTTCTCCTTCCTCAACATCTT-CTATCTCCCCTGTCTGCTTC-GGACCAGGGAGA 181
|| |||||||||||||||| | ||| || |||||| | |||||| || ||| ||| |
Sbjct 159 ACTCTCTTCTCCTTCCTCAAAACCTTCCT-CCTCCCCCATTTGCTTCAGG-CCA-GGAAA 215
Query 182 ATT-TGT-G--G-AAG---AAT-C--CAATTC-AAT----CCAAAGAAGAACAGATCTCG 225
||| | | | | ||| ||| | ||| | ||| |||||||||||||| |||||
Sbjct 216 ATTGTTTGGAAGCAAGTTAAATGCAGGAATCCAAATAAGGCCAAAGAAGAACAGGTCTCG 275
Query 226 TTACCATGTTTCTGTTATGAATGTCGCTACAGAGATCAACTATGTTGAACAAG--G-AAA 282
|||||||||||| ||||||||||| || || || ||||||| | |||||||| | |
Sbjct 276 TTACCATGTTTCGGTTATGAATGTAGCCACTGAAATCAACTCTACTGAACAAGTAGTAGG 335
Query 283 GAAGTTTGATTCAAAGGAA-AGTGCGAGGCCGGTTTATCCATTTGCTGCTATTGTTGGAC 341
||||||||||||||| ||| |||||||| ||||||||||||||||| ||||| || || |
Sbjct 336 GAAGTTTGATTCAAA-GAAGAGTGCGAGACCGGTTTATCCATTTGCAGCTATAGTAGGGC 394
Query 342 AAGATGAGATGAAGCTATGCCTTTTGTTAAATGTGATTGACCCGAAGATTGGCGGTGTGA 401
|||||||||||||| |||| |||||||| ||||| ||||| || |||||||| ||||| |
Sbjct 395 AAGATGAGATGAAGTTATGTCTTTTGTTGAATGTTATTGATCCAAAGATTGGTGGTGTTA 454
Query 402 TGATAATGGGAGATAGAGGAACTGGTAAATCAACAACTGTTAGATCTTTAGTTGATTTGC 461
|||| |||||||||||||||||||| ||||| |||||||||||||| ||||||||| ||
Sbjct 455 TGATTATGGGAGATAGAGGAACTGGAAAATCTACAACTGTTAGATCATTAGTTGATCTG- 513
Query 462 TT-CCTGAGATCACGGTTGTTGCTGGTGATCCGTATAACTCAGACCCGAGAGATCCCGAG 520
|| |||||||| | || ||||| ||||| ||||||||||| || |||| |||||| |||
Sbjct 514 TTACCTGAGATTAATGTAGTTGCAGGTGACCCGTATAACTCGGATCCGATAGATCCTGAG 573
Query 521 TGTATGGGAAAGGAAGTAAGGGAGAAAGTTCA-AAAGGGAGAACAA-TTGCCGGTTATCG 578
| |||||| |||||||| |||| |||| | ||| ||||| ||| || || ||||| |
Sbjct 574 TTTATGGGTGTTGAAGTAAGAGAGAGAGTTGAGAAA-GGAGAGCAAGTT-CCTGTTATTG 631
Query 579 AAACCAAAATCAATATGGTTGATCTTCCTTTAGGTGCTACGGAAGATAGAGTTTGCGGAA 638
|| || || |||||||||||||||||||| ||||| || |||||||||||||| ||||
Sbjct 632 CGACTAAGATTAATATGGTTGATCTTCCTTTGGGTGCAACAGAAGATAGAGTTTGTGGAA 691
Query 639 CTATTGATATCGAAAAAGCCTTAACTGAAGGTGTTAAGGCGTTTGAGCCTGGACTACTAG 698
| || ||||||||||| || || || |||||||| || || ||||||||||| | | |
Sbjct 692 CCATCGATATCGAAAAGGCTTTGACAGAAGGTGTAAAAGCCTTTGAGCCTGGTTTGTTGG 751
Query 699 CTAAAGCCAATAGAGGGATTCTTTATGTTGATGAAGTTAATCTCTTGGATGATCATTTAG 758
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 752 CTAAAGCTAATAGAGGGATTCTTTATGTTGATGAAGTTAATCTCTTGGATGATCATTTGG 811
Query 759 TTGATGTTCTTCTTG-ATTCTGCTGCATCGGGTTGGAACACTGTTGAAAGAGAAGGGATT 817
||||||||||| ||| |||| ||||| || |||||||| || ||||| ||||||||||||
Sbjct 812 TTGATGTTCTT-TTGGATTCAGCTGCTTCTGGTTGGAATACGGTTGAGAGAGAAGGGATT 870
Query 818 TCGATTTCTCACCCTGCTCGGTTTATCCTAATTGGTTCAGGAAATCCTGAAGAAGGAGAG 877
|||||||||||||| || |||||||| | || |||||||||||||| ||||||||||||
Sbjct 871 TCGATTTCTCACCCGGCGAGGTTTATCTTGATCGGTTCAGGAAATCCGGAAGAAGGAGAG 930
Query 878 CTTAGACCACAGCTTCTTGATAGGTTTGGTATGCACGCGCAAGTAGGGACAGTTAGGGAC 937
||||| ||||||||||||||| ||||||||||||| || ||||||||||| ||||| ||
Sbjct 931 CTTAGGCCACAGCTTCTTGATCGGTTTGGTATGCATGCACAAGTAGGGACGGTTAGAGAT 990
Query 938 GCCGAGCTAAGAGTCAAGATTGTTGAAGA-ACGAGCTCGTTTTGATAGTAACCCAAAGGA 996
|| || || | ||||||||||||||||| | |||||||||| |||||||||||||||||
Sbjct 991 GCTGATTTACGGGTCAAGATTGTTGAAGAGA-GAGCTCGTTTCGATAGTAACCCAAAGGA 1049
Query 997 GTTTC-GAGA-ATCTTATCAAG-CAGAACA--ACTGAAGCTTCAAGAGCAGATTACAACT 1051
|||| | || | |||| ||| | || || || ||||||||||| |||||| |||||
Sbjct 1050 -TTTCCGTGACA-CTTA-CAAAACCGAGCAGGAC--AAGCTTCAAGACCAGATTTCAACT 1104
Query 1052 GCAAGAAGCAATC-TTTC-TGCAGTTCAGATTGATCAAG-ATTTGAAAGTGAAGATCTCT 1108
|| || |||| | |||| | | |||||||||||| | | | ||||| ||||||||||||
Sbjct 1105 GCTAGG-GCAAACCTTTCCT-CGGTTCAGATTGAT-AGGGAATTGAAGGTGAAGATCTCT 1161
Query 1109 A-AGGTCTGTGCTGAGCTGGACGTTGACGGATTGAGAGGAGACATGGTGA-TAAACAGAG 1166
| || | ||| | ||||| | ||||| || |||||||||||||| |||| ||| |||||
Sbjct 1162 AGAGTT-TGTTCAGAGCTCAATGTTGATGGGTTGAGAGGAGACATAGTGACTAA-CAGAG 1219
Query 1167 CGGCTAGAGCACTTGCGGCACTCCAAGGAAGAGATCAAGTTACAGCTGAAGATGTTGGTA 1226
| || | ||||||||| || ||| |||||| ||||| ||| || | || ||||||| |
Sbjct 1220 CAGCAAAAGCACTTGCAGCTCTCAAAGGAAAAGATCGAGTAACTCCAGATGATGTTGCAA 1279
Query 1227 TTGTTATACCGAACTGCTTACGACACAGACTCAGAAAAGATCCATTGGAGTCTATGGATT 1286
||||| || ||||||||| | ||| | || || ||||||||| |||| ||||| ||||
Sbjct 1280 CCGTTATCCCTAACTGCTTAAGGCACCGTCTGAGGAAAGATCCACTGGAATCTATTGATT 1339
Query 1287 CGGGAATTCTCGTTACCGAGAAGTTCTACGAGGTTTTCAG 1326
| ||| |||| ||| ||||||||||| |||| |||||||
Sbjct 1340 CAGGAGTTCTAGTTTCCGAGAAGTTCGCCGAGATTTTCAG 1379
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67017727575
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5