BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494387
Length=798
Score E
Sequences producing significant alignments: (Bits) Value
AT5G45920.1 | Symbols: | SGNH hydrolase-type esterase superfam... 1243 0.0
> AT5G45920.1 | Symbols: | SGNH hydrolase-type esterase superfamily
protein | chr5:18622759-18624785 FORWARD LENGTH=897
Length=897
Score = 1243 bits (673), Expect = 0.0
Identities = 742/776 (96%), Gaps = 2/776 (0%)
Strand=Plus/Plus
Query 23 TTTCTCAAGAAAACAGTGAGGAAGATGATGAGACAGAAGATTTTTCTCTTCGGTGATTCA 82
||||||||||| | ||| ||||||||||||||| ||||||||||||||| ||||||||
Sbjct 40 TTTCTCAAGAAGATTGTGTGGAAGATGATGAGACGGAAGATTTTTCTCTTTGGTGATTCC 99
Query 83 ATCACTGAAGAATCCTTTAGTGACGGTGGCTGGGGTGCTTCTCTCGCCGATCTTCTCCGC 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 100 ATCACTGAAGAATCCTTTAGTGACGGTGGCTGGGGTGCTTCTCTCGCCGATCTTCTCCGC 159
Query 143 CGCAAGGCTGATATGGTGCTAAGAGGATACAGTGGATATAACACGAGGTGGGCGTTGAAA 202
||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct 160 CGCAAGGCTGATATGGTGCTACGAGGATACAGTGGATATAACACGAGGTGGGCACTGAAA 219
Query 203 GTGGTGGAGAGAGTTTTTCCGGCGGCAGAAGAAGACGGCCGAGATTCTCCGGCGGCTGTG 262
|||||||||||||||||||||| |||||||||||||||| ||||||||||||| ||||||
Sbjct 220 GTGGTGGAGAGAGTTTTTCCGGTGGCAGAAGAAGACGGCGGAGATTCTCCGGCAGCTGTG 279
Query 263 ACTGTATTCTTTGGAGCGAACGACGCGTGTCTGCCGGAGAGATGCTCGGGGTTTCAGCAT 322
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 280 ACTGTTTTCTTTGGAGCGAACGACGCGTGTCTTCCGGAGAGATGCTCGGGGTTTCAGCAT 339
Query 323 GTGCCACTTGACGAGTACCAGCAGAATCTTCGCTCTATTATTTCGTTTCTCAAGAATCGC 382
||||||||| |||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 340 GTGCCACTTCACGAGTACAAGCAGAATCTTCGCTCTATTGTTTCGTTTCTCAAGAATCGT 399
Query 383 TGGCCACAAACGGCCATTATTCTTATATCTCCGCCTCCAATCGACGAAGAGGCCCGCCTC 442
||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct 400 TGGCCACAAACGGCCATTATTCTTATAACTCCGCCTCCAATAGACGAAGAGGCCCGCCTC 459
Query 443 AGATATCCTTATATCGAAAACACAACGGGATTGCCAGAAAGAACGAATGAAGTTGCCGGG 502
||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||
Sbjct 460 AGATATCCTTATATCGAAAACACAACGGGGTTGCCGGAAAGAACGAATGAAGTAGCCGGA 519
Query 503 CTATACGCAAAAGCATGTATAGCAGTAGCTGAGGAATGTCAAATATCGGTCATTGATCTT 562
|||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct 520 CTATACGCAAAAGCATGTATAGCAGTAGCTGAGGAATGTCAAATTTCGGTCACTGATCTT 579
Query 563 TGGTCCAAAATGCAGCAAATTCCAAATTGGCAAACAGAATGTCTATGGGACGGGTTACAT 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 580 TGGTCCAAAATGCAGCAAATTCCAAATTGGCAAACAGAATGTCTATGGGACGGGTTACAT 639
Query 623 TTGAGTCGGGTTGGTAACAAAGTAGTGTTTGAAGAAGTAGCAAAGAAGCTTAAAGAAGAA 682
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 640 TTGAGTCGGGTCGGTAACAAAGTAGTGTTTGAAGAAGTAGCAAAGAAGCTTAAAGAAGAA 699
Query 683 GGCATTGGAGCTGAGGACTTAGCTGTGGATCTTCCCCTTATAGAAGATGTTGACCCAAAG 742
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 700 GGCATTGGAGCTGAGGACTTAGCTGTGGATCTTCCCCTTATAGAAGATGTTGACCCTAAG 759
Query 743 GATCCTCTCAAAGCCTTTGATGAGTTTTGATGCTTTATATTA-TCATCATGTAGTT 797
|||||||||||| ||||||||||||||||||||||||||||| | | |||| ||||
Sbjct 760 GATCCTCTCAAATCCTTTGATGAGTTTTGATGCTTTATATTACT-ACCATGCAGTT 814
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38830995631
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5