BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494390
Length=1167
Score E
Sequences producing significant alignments: (Bits) Value
AT5G45890.1 | Symbols: SAG12 | senescence-associated gene 12 | ... 1801 0.0
> AT5G45890.1 | Symbols: SAG12 | senescence-associated gene 12
| chr5:18613259-18614930 FORWARD LENGTH=1253
Length=1253
Score = 1801 bits (975), Expect = 0.0
Identities = 1107/1171 (95%), Gaps = 7/1171 (1%)
Strand=Plus/Plus
Query 1 CATTTAACTTTCCTAAAACAATGGCTTTTAAACATATGCAAATCTTTCTTTTCGTCGCCA 60
|||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |
Sbjct 22 CATTTAACTTTCCTAAAACAATGGCTTTAAAACATATGCAAATCTTTCTCTTCGTCGCTA 81
Query 61 TATTTTCATCATTCTATTTCTCCATCTCTCTTTCTCGTCCACTCGACAATGAACTCATCA 120
||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct 82 TATTTTCATCATTCTGTTTCTCCATCACTCTTTCTCGTCCACTCGACAATGAACTCATCA 141
Query 121 TGCAAAAGAGGCACATCGAGTGGATGACTAAACACGGCCGTGTCTACGCGGATGTGAAAG 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 142 TGCAAAAGAGGCACATCGAGTGGATGACTAAACACGGCCGTGTCTACGCGGATGTGAAGG 201
Query 181 AG-AAAAGCAATCGCTACGTTGTGTTCAAAAGCAACGTCGAACGTATTGAACATTTGAAT 239
|| |||| ||||||||||||||||||||||| |||||||||||| ||||||||||| |||
Sbjct 202 AGGAAAA-CAATCGCTACGTTGTGTTCAAAAACAACGTCGAACGCATTGAACATTTAAAT 260
Query 240 AACATTCCCGCCGGAAGAACATTCAAACTTGCGGTAAATCAGTTTGCGGATTTAACCAAT 299
| |||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 261 AGCATTCCTGCCGGAAGAACTTTCAAACTTGCGGTAAATCAGTTTGCTGATTTAACCAAT 320
Query 300 GACGAATTCCGCTCTATGTACACTGGTTTCAAAGGAGTCTCGTCACTCTCTAGCCAAAGC 359
|||||||| || || |||||||||||||||||||| |||||| || | ||||||||||||
Sbjct 321 GACGAATTTCGTTCCATGTACACTGGTTTCAAAGGTGTCTCGGCATTATCTAGCCAAAGC 380
Query 360 CAAACTAAAACGACTTCGTTTAGGTACCAAAACGTTTCTTCTAGTGCTTTGCCGATTTCT 419
|||||||||| | | |||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 381 CAAACTAAAATGTCGCCGTTTAGGTACCAAAACGTTTCTTCTGGTGCTTTGCCGGTTTCT 440
Query 420 GTTGACTGGAGGACGAAAGGAGCTGTGACCCCTATCAAGAATCAAGGCAGTTGCGGATGT 479
||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 441 GTTGACTGGAGGAAGAAAGGAGCTGTGACCCCTATCAAGAATCAAGGCAGCTGCGGATGT 500
Query 480 TGTTGGGCGTTTTCAGCGGTTGCGGCTATTGAAGGAGCAACACAGATAAAGAAAGGGAAA 539
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 501 TGTTGGGCGTTTTCAGCGGTTGCGGCTATTGAAGGAGCAACACAAATAAAGAAAGGGAAA 560
Query 540 CTTATATCTTTGTCTGAACAACAGCTTGTCGATTGCGACACAAACGATTTTGGCTGCGAA 599
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 561 CTTATATCTTTGTCAGAACAACAGCTTGTTGATTGCGACACAAACGATTTTGGCTGCGAA 620
Query 600 GGCGGTTTAATGGATACTGCGTTTGAGCATATAATGGCTACCGGCGGCTTGACAACTGAA 659
|||||||||||||||||||||||||||||||||| || || |||||||||||||||||
Sbjct 621 GGCGGTTTAATGGATACTGCGTTTGAGCATATAAAAGCGACTGGCGGCTTGACAACTGAG 680
Query 660 TCAAATTATCCTTACAAAGGCGAAGACGCTACTTGCAATTCCAAAAAGACTAACCCGAAA 719
|||||||||||||||||||||||||||||||||||||||||||||||||| || || |||
Sbjct 681 TCAAATTATCCTTACAAAGGCGAAGACGCTACTTGCAATTCCAAAAAGACCAATCCAAAA 740
Query 720 GCAACTTCTATTACAGGTTATGAGGATGTCCCGGTTAACGACGAGCAAGCACTGATGAAG 779
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 741 GCAACTTCTATTACAGGTTATGAGGATGTCCCGGTTAATGATGAGCAAGCACTGATGAAG 800
Query 780 GCAGTGGCACACCAACCAGTTAGCGTTGGAATTGAAGGTGGTGGTTTTGATTTCCAATTT 839
||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 801 GCAGTGGCACACCAACCGGTTAGCGTTGGAATTGAAGGAGGTGGTTTTGATTTCCAATTC 860
Query 840 TATTCGTCTGGTGTGTTCACTGGAGAGTGCACTACGTATCTTGATCATGCGGTAACTGCC 899
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 861 TATTCGTCTGGTGTGTTCACTGGAGAGTGCACTACGTATCTTGATCATGCAGTAACTGCG 920
Query 900 ATTGGATACGGCCAATCGACTAACGGATCAAAGTATTGGATCATCAAGAATTCTTGGGGA 959
|||||||||||| |||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 921 ATTGGATACGGCGAATCTACTAACGGATCAAAGTATTGGATCATCAAGAATTCATGGGGA 980
Query 960 ACAAAATGGGGAGAAAGTGGATATATGAGGATTCAAAAAGATATCAAGGATAAACAAGGA 1019
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 981 ACAAAATGGGGAGAAAGTGGATATATGAGGATTCAAAAAGATGTCAAGGATAAACAAGGA 1040
Query 1020 CTATGTGGTCTTGCCATGAAAGCTTCTTACCCTACTATATGATAT-CAAAACCGGGTTAA 1078
|||||||||||||||||||||||||||||||| ||||||||| || |||||||| |||||
Sbjct 1041 CTATGTGGTCTTGCCATGAAAGCTTCTTACCCAACTATATGA-ATTCAAAACCGTGTTAA 1099
Query 1079 ACTTTTAATTGTGTATGTTTGTGTGGGATTTATGTC-AAAAATAATTTGAATAGTAT-AT 1136
||||||||||||||||||||||||||||| ||||| ||||||||||||||| || | ||
Sbjct 1100 GCTTTTAATTGTGTATGTTTGTGTGGGATTGATGTCTAAAAATAATTTGAATTGTTTTAT 1159
Query 1137 GCaaaaaaaaTTGTATTTAGACTGTTGTATG 1167
| ||||||| |||||||||||||||||||||
Sbjct 1160 GTAAAAAAA-TTGTATTTAGACTGTTGTATG 1189
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57278821845
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5