BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg494394 Length=771 Score E Sequences producing significant alignments: (Bits) Value AT5G45880.1 | Symbols: | Pollen Ole e 1 allergen and extensin ... 1245 0.0 AT4G18596.1 | Symbols: | Pollen Ole e 1 allergen and extensin ... 619 1e-176 > AT5G45880.1 | Symbols: | Pollen Ole e 1 allergen and extensin family protein | chr5:18609664-18611166 REVERSE LENGTH=895 Length=895 Score = 1245 bits (674), Expect = 0.0 Identities = 743/775 (96%), Gaps = 10/775 (1%) Strand=Plus/Plus Query 1 TTGTCCTCTTCTCAAACATATCTCAACTTATTGTTTGAATATaaaaagagatatcaaaaa 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 TTGTCCTCTTCTCAAACATATCTCAACTTATTGTTTGAATATAAAAAGAGATATCAAAAA 60 Query 61 gaagagaagaccaaaaacaaaaccaaaaatctctaacaaaaaTGGCTTCCAAAGCTATCT 120 ||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| Sbjct 61 GAAGAGAAGACCAAAAACAAAAC-AAAAATCTCTAATAAAAATGGCTTCCAAAGCTATCT 119 Query 121 TCTTCTCTTTCTTTGTTGTTTCCGCCGTGTGTTTGTCTTCTCTCGCCGGTTTCGCCGCCG 180 |||||||||||||||| || ||||||||||||||||||||||| || ||||||||||||| Sbjct 120 TCTTCTCTTTCTTTGTCGTCTCCGCCGTGTGTTTGTCTTCTCTGGCAGGTTTCGCCGCCG 179 Query 181 CTGATGCTGATGACTTCGATCGTTTCCAGATTCAGGGATCAGTTTACTGTGACACTTGCC 240 |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 180 CTGATGCTGACGACTTCGATCGTTTCCAGATTCAAGGATCAGTTTACTGTGACACTTGCC 239 Query 241 GTGTCCAATTCGTTACCCGTCTCAGCAAATTCCTCGAAGGTGCGAAAGTGAAGTTGGAGT 300 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 240 GTGTCCAATTCGTTACCCGTCTCAGCAAATTCCTCGAAGGCGCGAAAGTGAAGTTGGAGT 299 Query 301 GCAGGAGCAGAACAAACGGAACCGTAACATTGACCAAAGAAGCTGTTACCGACAAAACAG 360 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 300 GCAGGAGCAGAACAAACGGAACCATAACATTGACCAAAGAAGCTGTTACCGACAAAACAG 359 Query 361 GAAGCTACAAGATGGAAGTAACTGGTGACCACGAGGAAGAAGTTTGCGAGCTTGTTTTGG 420 |||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 360 GAAGCTACAAAATGGAAGTAACCGGTGACCACGAGGAAGAAGTTTGCGAGCTTGTTTTGG 419 Query 421 TCCAATCACCAGACAGTGGTTGCAGTGACGTCAGCAAAGAGGCTTACTTACGTAACGCCG 480 |||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| Sbjct 420 TCCAATCACCAGACAGTGGTTGCAGTGATGTCAGCACAGAGGCTTACTTACGTAACGCCG 479 Query 481 CTAAGATCAGTTTAACGGCGAATGACGGAATCGTCTCTCACGAGACACGTATCGTTAACC 540 ||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| Sbjct 480 CTAAGATCAGTTTAACGGCGAATGACGGAATCGTCTCCCACGAGACACGTATTGTTAACC 539 Query 541 CTCTCGGTTTCATGGTTCAGACTCCATTGGCTGATTGTCCTGCTGCTTTCAAGGAGCTTG 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 540 CTCTCGGTTTCATGGTTCAGACTCCATTGGCTGATTGTCCTGCTGCTTTCAAGGAGCTTG 599 Query 601 GTATTGTCCCTGACGTCACATTCTAAGCGAAA-GAAAGAGaaa-aaaaaaaCATATATGA 658 |||||||||||||||| ||||||||||||||| |||| | ||| ||||||||||||| | Sbjct 600 GTATTGTCCCTGACGTAACATTCTAAGCGAAAAGAAAAA-AAAGAAAAAAACATATA--A 656 Query 659 CATGAGAGATTTTCTATTTGCTTAATTTTATCAAGTTTATTATCATTATAATGAATTAAT 718 ||||||||||||||||||||||||| |||||||||||||| | ||| ||||||||||||| Sbjct 657 CATGAGAGATTTTCTATTTGCTTAACTTTATCAAGTTTATAACCAT-ATAATGAATTAAT 715 Query 719 ATCATCATTAATTAA-TTTTCGCGTTTTGGTTTTGTTT-ATTTTGATGTGTGAGT 771 |||||||||||||| ||||| |||||||||||||||| |||| ||||||||||| Sbjct 716 ATCATCATTAATTACCTTTTCACGTTTTGGTTTTGTTTGATTT-GATGTGTGAGT 769 > AT4G18596.1 | Symbols: | Pollen Ole e 1 allergen and extensin family protein | chr4:10239017-10239851 FORWARD LENGTH=739 Length=739 Score = 619 bits (335), Expect = 1e-176 Identities = 465/528 (88%), Gaps = 8/528 (2%) Strand=Plus/Plus Query 100 aaaTGGCTTCCAAAGCTATCTTCTTCTCTTTCTTTGTTGTTTCCGCCGTGTGTTTGTCTT 159 ||||||| |||||||| |||||| | || ||| | |||| || |||||||| |||| | Sbjct 96 AAATGGCGTCCAAAGCCATCTTC-T-TC-TTC--T-TTGTCTCTGCCGTGTGCCTGTCCT 149 Query 160 CTCTCGCCGGTTTCGCCGCCGCTGATGCTGATGACTTCGATCGTTTCCAGATTCAGGGAT 219 ||||||||||| | ||| ||||||||| |||||||| || |||||||| |||||||||| Sbjct 150 CTCTCGCCGGTGTGGCCATCGCTGATGCCGATGACTTTGACCGTTTCCAAATTCAGGGAT 209 Query 220 CAGTTTACTGTGACACTTGCCGTGTCCAATTCGTTACCCGTCTCAGCAAATTCCTCGAAG 279 | ||||| |||||||| |||||||||||||||||||||||||||||||| ||||| |||| Sbjct 210 CGGTTTATTGTGACACATGCCGTGTCCAATTCGTTACCCGTCTCAGCAAGTTCCTTGAAG 269 Query 280 GTGCGAAAGTGAAGTTGGAGTGCAGGAGCAGAACAAACGGAACCGTAACATTGACCAAAG 339 | |||||||||||| | || ||||||||||||||||||||||||||||||||||| |||| Sbjct 270 GCGCGAAAGTGAAGCTAGAATGCAGGAGCAGAACAAACGGAACCGTAACATTGACAAAAG 329 Query 340 AAGCTGTTACCGACAAAACAGGAAGCTACAAG-ATGGAAGTAACTGGTGACCACGAGGAA 398 |||| || || ||||||||||| |||||| || |||||||| || |||||||| ||||| Sbjct 330 AAGCCGTAACGGACAAAACAGGGAGCTAC-AGAATGGAAGTGACCGGTGACCATGAGGAG 388 Query 399 GAAGTTTGCGAGCTTGTTTTGGTCCAATCACCAGACAGTGGTTGCAGTGACGTCAGCAAA 458 ||||||||||||||||| | ||| |||||||||||||||||||||||||||| |||||| Sbjct 389 GAAGTTTGCGAGCTTGTGCTCGTCGAATCACCAGACAGTGGTTGCAGTGACGTTAGCAAA 448 Query 459 GAGGCTTACTTACGTAACGCCGCTAAGATCAGTTTAACGGCGAATGACGGAATCGTCTCT 518 ||||||||| |||||||||||||||||||||| | || ||||||||||||||||||||| Sbjct 449 GAGGCTTACCTACGTAACGCCGCTAAGATCAGCCTGACCGCGAATGACGGAATCGTCTCT 508 Query 519 CACGAGACACGTATCGTTAACCCTCTCGGTTTCATGGTTCAGACTCCATTGGCTGATTGT 578 ||||||||||||||||||||||||||||||||||||||||| ||||| | ||||| ||| Sbjct 509 CACGAGACACGTATCGTTAACCCTCTCGGTTTCATGGTTCAAACTCCGTCAGCTGAATGT 568 Query 579 CCTGCTGCTTTCAAGGAGCTTGGTATTGTCCCTGACGTCACATTCTAA 626 || ||||||||||||||||| || || || ||||| ||||| |||||| Sbjct 569 CCCGCTGCTTTCAAGGAGCTCGGGATCGTTCCTGATGTCACCTTCTAA 616 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 37474673662 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5