BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494394
Length=771
Score E
Sequences producing significant alignments: (Bits) Value
AT5G45880.1 | Symbols: | Pollen Ole e 1 allergen and extensin ... 1245 0.0
AT4G18596.1 | Symbols: | Pollen Ole e 1 allergen and extensin ... 619 1e-176
> AT5G45880.1 | Symbols: | Pollen Ole e 1 allergen and extensin
family protein | chr5:18609664-18611166 REVERSE LENGTH=895
Length=895
Score = 1245 bits (674), Expect = 0.0
Identities = 743/775 (96%), Gaps = 10/775 (1%)
Strand=Plus/Plus
Query 1 TTGTCCTCTTCTCAAACATATCTCAACTTATTGTTTGAATATaaaaagagatatcaaaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TTGTCCTCTTCTCAAACATATCTCAACTTATTGTTTGAATATAAAAAGAGATATCAAAAA 60
Query 61 gaagagaagaccaaaaacaaaaccaaaaatctctaacaaaaaTGGCTTCCAAAGCTATCT 120
||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct 61 GAAGAGAAGACCAAAAACAAAAC-AAAAATCTCTAATAAAAATGGCTTCCAAAGCTATCT 119
Query 121 TCTTCTCTTTCTTTGTTGTTTCCGCCGTGTGTTTGTCTTCTCTCGCCGGTTTCGCCGCCG 180
|||||||||||||||| || ||||||||||||||||||||||| || |||||||||||||
Sbjct 120 TCTTCTCTTTCTTTGTCGTCTCCGCCGTGTGTTTGTCTTCTCTGGCAGGTTTCGCCGCCG 179
Query 181 CTGATGCTGATGACTTCGATCGTTTCCAGATTCAGGGATCAGTTTACTGTGACACTTGCC 240
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 180 CTGATGCTGACGACTTCGATCGTTTCCAGATTCAAGGATCAGTTTACTGTGACACTTGCC 239
Query 241 GTGTCCAATTCGTTACCCGTCTCAGCAAATTCCTCGAAGGTGCGAAAGTGAAGTTGGAGT 300
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 240 GTGTCCAATTCGTTACCCGTCTCAGCAAATTCCTCGAAGGCGCGAAAGTGAAGTTGGAGT 299
Query 301 GCAGGAGCAGAACAAACGGAACCGTAACATTGACCAAAGAAGCTGTTACCGACAAAACAG 360
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 300 GCAGGAGCAGAACAAACGGAACCATAACATTGACCAAAGAAGCTGTTACCGACAAAACAG 359
Query 361 GAAGCTACAAGATGGAAGTAACTGGTGACCACGAGGAAGAAGTTTGCGAGCTTGTTTTGG 420
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 360 GAAGCTACAAAATGGAAGTAACCGGTGACCACGAGGAAGAAGTTTGCGAGCTTGTTTTGG 419
Query 421 TCCAATCACCAGACAGTGGTTGCAGTGACGTCAGCAAAGAGGCTTACTTACGTAACGCCG 480
|||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct 420 TCCAATCACCAGACAGTGGTTGCAGTGATGTCAGCACAGAGGCTTACTTACGTAACGCCG 479
Query 481 CTAAGATCAGTTTAACGGCGAATGACGGAATCGTCTCTCACGAGACACGTATCGTTAACC 540
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 480 CTAAGATCAGTTTAACGGCGAATGACGGAATCGTCTCCCACGAGACACGTATTGTTAACC 539
Query 541 CTCTCGGTTTCATGGTTCAGACTCCATTGGCTGATTGTCCTGCTGCTTTCAAGGAGCTTG 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 CTCTCGGTTTCATGGTTCAGACTCCATTGGCTGATTGTCCTGCTGCTTTCAAGGAGCTTG 599
Query 601 GTATTGTCCCTGACGTCACATTCTAAGCGAAA-GAAAGAGaaa-aaaaaaaCATATATGA 658
|||||||||||||||| ||||||||||||||| |||| | ||| ||||||||||||| |
Sbjct 600 GTATTGTCCCTGACGTAACATTCTAAGCGAAAAGAAAAA-AAAGAAAAAAACATATA--A 656
Query 659 CATGAGAGATTTTCTATTTGCTTAATTTTATCAAGTTTATTATCATTATAATGAATTAAT 718
||||||||||||||||||||||||| |||||||||||||| | ||| |||||||||||||
Sbjct 657 CATGAGAGATTTTCTATTTGCTTAACTTTATCAAGTTTATAACCAT-ATAATGAATTAAT 715
Query 719 ATCATCATTAATTAA-TTTTCGCGTTTTGGTTTTGTTT-ATTTTGATGTGTGAGT 771
|||||||||||||| ||||| |||||||||||||||| |||| |||||||||||
Sbjct 716 ATCATCATTAATTACCTTTTCACGTTTTGGTTTTGTTTGATTT-GATGTGTGAGT 769
> AT4G18596.1 | Symbols: | Pollen Ole e 1 allergen and extensin
family protein | chr4:10239017-10239851 FORWARD LENGTH=739
Length=739
Score = 619 bits (335), Expect = 1e-176
Identities = 465/528 (88%), Gaps = 8/528 (2%)
Strand=Plus/Plus
Query 100 aaaTGGCTTCCAAAGCTATCTTCTTCTCTTTCTTTGTTGTTTCCGCCGTGTGTTTGTCTT 159
||||||| |||||||| |||||| | || ||| | |||| || |||||||| |||| |
Sbjct 96 AAATGGCGTCCAAAGCCATCTTC-T-TC-TTC--T-TTGTCTCTGCCGTGTGCCTGTCCT 149
Query 160 CTCTCGCCGGTTTCGCCGCCGCTGATGCTGATGACTTCGATCGTTTCCAGATTCAGGGAT 219
||||||||||| | ||| ||||||||| |||||||| || |||||||| ||||||||||
Sbjct 150 CTCTCGCCGGTGTGGCCATCGCTGATGCCGATGACTTTGACCGTTTCCAAATTCAGGGAT 209
Query 220 CAGTTTACTGTGACACTTGCCGTGTCCAATTCGTTACCCGTCTCAGCAAATTCCTCGAAG 279
| ||||| |||||||| |||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 210 CGGTTTATTGTGACACATGCCGTGTCCAATTCGTTACCCGTCTCAGCAAGTTCCTTGAAG 269
Query 280 GTGCGAAAGTGAAGTTGGAGTGCAGGAGCAGAACAAACGGAACCGTAACATTGACCAAAG 339
| |||||||||||| | || ||||||||||||||||||||||||||||||||||| ||||
Sbjct 270 GCGCGAAAGTGAAGCTAGAATGCAGGAGCAGAACAAACGGAACCGTAACATTGACAAAAG 329
Query 340 AAGCTGTTACCGACAAAACAGGAAGCTACAAG-ATGGAAGTAACTGGTGACCACGAGGAA 398
|||| || || ||||||||||| |||||| || |||||||| || |||||||| |||||
Sbjct 330 AAGCCGTAACGGACAAAACAGGGAGCTAC-AGAATGGAAGTGACCGGTGACCATGAGGAG 388
Query 399 GAAGTTTGCGAGCTTGTTTTGGTCCAATCACCAGACAGTGGTTGCAGTGACGTCAGCAAA 458
||||||||||||||||| | ||| |||||||||||||||||||||||||||| ||||||
Sbjct 389 GAAGTTTGCGAGCTTGTGCTCGTCGAATCACCAGACAGTGGTTGCAGTGACGTTAGCAAA 448
Query 459 GAGGCTTACTTACGTAACGCCGCTAAGATCAGTTTAACGGCGAATGACGGAATCGTCTCT 518
||||||||| |||||||||||||||||||||| | || |||||||||||||||||||||
Sbjct 449 GAGGCTTACCTACGTAACGCCGCTAAGATCAGCCTGACCGCGAATGACGGAATCGTCTCT 508
Query 519 CACGAGACACGTATCGTTAACCCTCTCGGTTTCATGGTTCAGACTCCATTGGCTGATTGT 578
||||||||||||||||||||||||||||||||||||||||| ||||| | ||||| |||
Sbjct 509 CACGAGACACGTATCGTTAACCCTCTCGGTTTCATGGTTCAAACTCCGTCAGCTGAATGT 568
Query 579 CCTGCTGCTTTCAAGGAGCTTGGTATTGTCCCTGACGTCACATTCTAA 626
|| ||||||||||||||||| || || || ||||| ||||| ||||||
Sbjct 569 CCCGCTGCTTTCAAGGAGCTCGGGATCGTTCCTGATGTCACCTTCTAA 616
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37474673662
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5