BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494397
Length=1609
Score E
Sequences producing significant alignments: (Bits) Value
AT5G45850.1 | Symbols: | Protein of unknown function (DUF688) ... 2056 0.0
> AT5G45850.1 | Symbols: | Protein of unknown function (DUF688)
| chr5:18599759-18601570 REVERSE LENGTH=1712
Length=1712
Score = 2056 bits (1113), Expect = 0.0
Identities = 1405/1541 (91%), Gaps = 39/1541 (3%)
Strand=Plus/Plus
Query 1 AGAAAACATCACTAACTCTTTAGATTCCttttcactattttatttattcattttacacat 60
|||||||||||||||||||||||||||||||| | | |||| || |||||||||| |
Sbjct 1 AGAAAACATCACTAACTCTTTAGATTCCTTTT--C-A-TTTA--TA--CATTTTACACTT 52
Query 61 tcttgattcttga-actttctttaaagttt-tttcttttttttGTTAAAGAGAGTTCTTG 118
|||| |||||||| || ||||||||||||| ||| ||||| || ||||||||||||||
Sbjct 53 TCTTAATTCTTGACACCTTCTTTAAAGTTTATTT-TTTTTGGGGTGAAAGAGAGTTCTTG 111
Query 119 AAAGGATTTTTATCAGAAGCAACAATGGAGGAGAAGAAACTAAATTTAGATGCTCCATTC 178
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 112 AAAGGATTTTTATCAGAAGCAAAAATGGAGGAGAAGAAACTAAATTTAGATGCTCCATTC 171
Query 179 TTATCCGTGAGGCGAGTTCCTACTAAACCAGAGGATCCAAACGAATCAGAGAACACCAAG 238
||||||||||||||||||| |||||||| || |||||||||||||||||||||||||||
Sbjct 172 CTATCCGTGAGGCGAGTTCCGACTAAACCTGATGATCCAAACGAATCAGAGAACACCAAG 231
Query 239 AAGAAGACGACGACAACGAGAAGGAGA-AAACTCAAAGATTCGTGTCAAGAAACAGA-AC 296
|||||||||| ||| |||||||||||| ||| |||||||||| |||||||||||||| |
Sbjct 232 AAGAAGACGATGACGACGAGAAGGAGAGAAA-TCAAAGATTCATGTCAAGAAACAGAGA- 289
Query 297 ATGAAACTCTGATTCGACTATTACAAGACCAGAGTTTCGATCATGTAATGGAACCATCTT 356
|||||| |||||||||| |||||||||||||||||||||| ||||||||||||||||| |
Sbjct 290 ATGAAATTCTGATTCGATTATTACAAGACCAGAGTTTCGAGCATGTAATGGAACCATCGT 349
Query 357 CAGTTCCTTTCAAATGGGAACAAACACCTGGAAAGCCAAAGGATCAAGATACA-CTAATC 415
|||||||||||||||||||||||||||||||||||||||||||| || | | | ||| ||
Sbjct 350 CAGTTCCTTTCAAATGGGAACAAACACCTGGAAAGCCAAAGGAT-AAAAAAAACCTAGTC 408
Query 416 GAAGAACT-AGACCTAATCAAAGCTTTGGAAATGGTTTCTTCAACCGCAAGTTTCTCTGT 474
|||| | | |||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 409 GAAG-AGTCAGACCTAATCAAAGCTATGGAAATGGTTTCTTCAACCGCAAGTTTCTCTGT 467
Query 475 TAATTGCAGTTCAAGTGGAGTAAGTGAGTTCGAGAAGAA-GAGAGATGGAGACAGATCGA 533
||||||||| |||||||||||||||||||||||||| || | ||||||||||||||||||
Sbjct 468 TAATTGCAGCTCAAGTGGAGTAAGTGAGTTCGAGAATAATG-GAGATGGAGACAGATCGA 526
Query 534 GTAATGATGTATCAAGAGATGACGTCGTT-TATGAATATCGTGATCTCATCATGTCGAGA 592
|||||| | | ||||||||||||||| || | ||||||||||||||||||||||||||||
Sbjct 527 GTAATG-T-T-TCAAGAGATGACGTCATTCT-TGAATATCGTGATCTCATCATGTCGAGA 582
Query 593 TTTTTACCAGCCGCGGAAGCAAT-TGCCATGAAAAAT-AAGAAAGAAGCTTCTCGATTTA 650
||||||||||||||||||||||| | || || ||||| |||||||||||||||||| |||
Sbjct 583 TTTTTACCAGCCGCGGAAGCAATCT-CCTTG-AAAATGAAGAAAGAAGCTTCTCGAGTTA 640
Query 651 AAGAGGAGAAGAAGAAGAAACAGAGCATTGCTCTACAGAGAGTCTCTATGGCAATTAATC 710
||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 641 AAGCGGAGAAGAAGAAGAAACAGAGCATTGCTCTACAGAGAGTCTCCATGGCAATTAATC 700
Query 711 AAGATTTAAACAACgatgaagatgatgaggatg-atgatgatgatCATAATCATGTCGAT 769
||||||| |||||||| | ||||||||||| | || || ||||||||||||||| |||
Sbjct 701 AAGATTTGAACAACGACGTTGATGATGAGGA-GCAT--TG-TGATCATAATCATGTGGAT 756
Query 770 GGTATTGATGCAACGGTTTACTCAAATGATTCCAAGAAAGCTCAGTTAGGGTTCTTGCCA 829
|||||||||||| |||||||||||||| |||||||||| |||||||||||||||||||
Sbjct 757 GGTATTGATGCATTAGTTTACTCAAATGACTCCAAGAAAGGTCAGTTAGGGTTCTTGCCA 816
Query 830 TGGTTCTGTTCCAAGAACTCAGTGGATGTTCTTAATCC-GTTACTTTCTCGGATCAAGAC 888
|||||||||||||||||||||||||||||||||| || ||| || ||||||||||||||
Sbjct 817 TGGTTCTGTTCCAAGAACTCAGTGGATGTTCTTACCCCGGTT-CTCTCTCGGATCAAGAC 875
Query 889 ATGTCAGGATATTGGAGTAAAATCGGGGAATATAATAAACCCGAAATCGCTAGATTCTGT 948
|||||||||| ||||||||||||||| ||||| |||||||| |||||| ||||||||||
Sbjct 876 ATGTCAGGATGTTGGAGTAAAATCGGAAAATATCATAAACCCTAAATCGATAGATTCTGT 935
Query 949 TTACAAAACAAAATCAGCATCACCGAGAATCTTGAAAACAAACAAGGTTATGAGTAAGTC 1008
||||||||| |||||| |||||||||||||||| ||| ||| ||||||||||||||||||
Sbjct 936 TTACAAAACGAAATCAACATCACCGAGAATCTTCAAATCAAGCAAGGTTATGAGTAAGTC 995
Query 1009 TCAAGAAATCTATGAAACACCAAGACTTTCAAGA-GAGATTTCCAGAATTTCTTTACCGA 1067
|||||||||| ||| ||| |||||| |||||| | || |||||||| |||||| |||| |
Sbjct 996 TCAAGAAATCGATGCAACGCCAAGATTTTCAA-ACGATATTTCCAGGATTTCTCTACCTA 1054
Query 1068 AATCCGGCGAAACACTCAAGATCCAGCGAAATCCTTCGAGGTTGCAACGAACAACCGATC 1127
||||| | ||||||||| |||||| | |||||| |||||||||||||| |||||||||||
Sbjct 1055 AATCCAGAGAAACACTCCAGATCCCGAGAAATCATTCGAGGTTGCAACAAACAACCGATC 1114
Query 1128 AGAATCAGAGACAAGAAATTAGGTTTCTTGTGGAAGAAGTAAAGAGAAGGAGCAACAGAA 1187
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1115 AGAATCAGAGACAAGAGATTAGGTTTCTTGTGGAAGAAGTAAAGAGAAGGAGCAACAGAA 1174
Query 1188 ACAAAAACAGGTCAGAAAATCTCTCTGTTTCTCAACCTCCATTGCCTAAAACTCCTTCAG 1247
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1175 ACAAAAACAGGTCAGAGAATCTCTCTGTTTCTCAACCTCCATTGCCTAAAACTCCTTCAG 1234
Query 1248 AGTCGTGGCTTTGCCGGACACTTCCGAGAAGCTCTACCACCTCCTCCGTATTCTCCGGCC 1307
|||| ||||||||||||||||||||||||||||| |||||||||||||| |||| || |
Sbjct 1235 AGTCTTGGCTTTGCCGGACACTTCCGAGAAGCTCGACCACCTCCTCCGTCGTCTCTGGTC 1294
Query 1308 AATTTGCCGTCGTCGTCTCCGGTCAAGCCGCCCGTTTCAAGAAGAAGATGGAGCAAAAGA 1367
|||| ||||| ||||||||||||||||| |||||||| |||||||| |||||| ||||||
Sbjct 1295 AATTCGCCGTAGTCGTCTCCGGTCAAGCAGCCCGTTTTAAGAAGAATATGGAGAAAAAGA 1354
Query 1368 CTGAATCTCAGTCTATACATTGGGAGACGATTGTGAAAACATCGAATACACACCATGATC 1427
|||| |||||||||| | | |||||||||||||||||||||||| || ||||||||||||
Sbjct 1355 CTGACTCTCAGTCTAAAAAATGGGAGACGATTGTGAAAACATCGTATTCACACCATGATC 1414
Query 1428 ATGTTCGCTACTCAGAGGGGCTTATTGTTGTTCATCCTACTCGTCAACATAAATTCTGAA 1487
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1415 ATGTTCGCTATTCAGAGGGGCTTATTGTTGTTCATCCTACTCGTCAACACAAATTCTGAA 1474
Query 1488 AACCGGAATAGTTTGTACTTCATACCGAGTTTCCTTTTTTC 1528
||||||||| |||| |||| ||||| |||||||||||||||
Sbjct 1475 AACCGGAATCGTTTTTACTCCATACAGAGTTTCCTTTTTTC 1515
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79467462735
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5