BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494398
Length=2010
Score E
Sequences producing significant alignments: (Bits) Value
AT5G45840.2 | Symbols: | Leucine-rich repeat protein kinase fa... 2263 0.0
AT4G18640.1 | Symbols: MRH1 | Leucine-rich repeat protein kinas... 857 0.0
> AT5G45840.2 | Symbols: | Leucine-rich repeat protein kinase
family protein | chr5:18593917-18597995 REVERSE LENGTH=2675
Length=2675
Score = 2263 bits (1225), Expect = 0.0
Identities = 1354/1415 (96%), Gaps = 13/1415 (1%)
Strand=Plus/Plus
Query 601 TGGGTCCGAAGGGAATCTCACGGCG-AGAATTATGTCGTGAATTATCACCCAAGTTATTC 659
||||| ||||| |||||||| || | |||||||||| ||||||||||||||||| |
Sbjct 1106 TGGGTGCGAAGAGAATCTCATGG-GAAGAATTATGTAGTGAATTATCACCCAAG----T- 1159
Query 660 AGGGAACAAAACTAGTATCTTCAAAAGGCGTGAGTTACTCGAGGGAACAAGCAATTTAGC 719
| |||| ||||||||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct 1160 -GAGAACGAAACTAGTATCTTCAAAAGACGTGAGTTACTCGAGGAAACAAGCAATTTAGC 1218
Query 720 GGCTATGCCGGCGCCTGATGCGCCTAGTCCTTCTCCTGAGATTGTAACCAGAGTGTTTCC 779
||||||||| ||||||||| |||| |||||||||||||||||| |||| | |||||||||
Sbjct 1219 GGCTATGCCTGCGCCTGATACGCCCAGTCCTTCTCCTGAGATTATAACTATAGTGTTTCC 1278
Query 780 TCGAAGCAGCGGGTCTTTTCCCGCATTAACTAATGCAAAGAAGAGAATACCACCATTGAT 839
||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 1279 TCGAAGCAGCGGGTCGTTTCCAGCATTAACTAATGCAAAGAAGAGAATACCTCCATTGAT 1338
Query 840 CTCTCCTTCTTCTCCT--T-CTCCGCCTACCAACAACACCATCGCTAATGATCCACCGAG 896
| |||||||||||||| | ||| |||||||||||||||||||||| ||||||||||||
Sbjct 1339 CCCTCCTTCTTCTCCTCCTCCTCTACCTACCAACAACACCATCGCTAGTGATCCACCGAG 1398
Query 897 GAAATTCGAAGAAAAATCGAAAGGGTTTAAGGACGTTTGGTTGTATGTTGTTATTGGTGT 956
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 1399 GAAATTCGAAGAAAAATCGAAAGGGTTTAAGGACGTTTGGTTGTATGTTGTGATCGGTGT 1458
Query 957 TGCTGCTTTCATAGCGATGCTGATAATTGTAGCGGTTATATTCTTCTTCCGGAAAAGAGC 1016
|||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1459 TGCTGCTTTCGTAGCGATGCTGATAATAGTAGCGGTTATATTCTTCTTCCGGAAAAGAGC 1518
Query 1017 TGTGAAGAGTATAGGTCCATGGAAGACTGGTTTGAGTGGACAATTGCAGAAAGCTTTTGT 1076
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1519 TGTGAAGAGTATAGGTCCATGGAAGACTGGTTTGAGTGGACAATTGCAGAAAGCTTTTGT 1578
Query 1077 TACTGGTGTACCTAAGCTAAACCTGTCTGAACTAGAAACAGCCTGTGAAGATTTCAGTAA 1136
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1579 TACTGGTGTACCTAAGCTAAACCGGTCTGAACTAGAAACAGCCTGTGAAGATTTCAGTAA 1638
Query 1137 TATCATTGAAGCATTTGATGGTTACACTGTCTATAAAGGAACTTTGTCAAGTGGCGTTGA 1196
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1639 TATCATTGAAGCATTTGATGGTTACACTGTCTATAAAGGAACTTTGTCCAGTGGCGTTGA 1698
Query 1197 GATTGCGGTTGCTTCAACCGCGATTTTGGAAACTAGAGAATGGACAAGAGCTATGGAAAT 1256
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 1699 GATTGCGGTTGCTTCAACCGCCATTTTGGAAACTAGGGAATGGACAAGAGCTATGGAAAT 1758
Query 1257 GACTTACCGCAGAAGGATTGATACAATGTCAAGAGTCAACCATAAGAACTTTGTGAATCT 1316
|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 1759 GACTTACCGCAGAAGGATTGATACAATGTCAAGAGTCAACCATAAGAACTTTATTAATCT 1818
Query 1317 AATTGGATATTGCGAAGAAGATGAACCGTTTAATAGGATGATGGTTTTCGAATATGCTCC 1376
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1819 GATTGGTTATTGCGAAGAAGATGAACCGTTTAATAGGATGATGGTTTTCGAATATGCTCC 1878
Query 1377 AAATGGAACTCTTTTCGAACATTTGCACGATAAGGAAATGGAACATCTTGATTGGAACGC 1436
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 1879 AAATGGAACTCTTTTCGAACATTTGCATGATAAGGAAATGGAGCATCTTGATTGGAACGC 1938
Query 1437 GAGGATGAGGATAATAATGGGAACTGCTTATTGTCTGCAATATATGCACGAGCTTAATCC 1496
||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1939 GAGGACGAGGATAATAATGGGAACTGCTTATTGTCTGCAATATATGCACGAGCTCAATCC 1998
Query 1497 GCCAATCTCACACACTAAACTTGTCTCATCAGCAATCTACTTAACAGATGATTACGCAGC 1556
||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 1999 TCCAATCTCACACACTAAACTTGTCTCATCAGCAATATACTTAACCGATGATTACGCAGC 2058
Query 1557 AAAGGTCGGAGAGGTTCCTTTCAGCGGACAAACCGGGAGTAAACCGAGAAAACCGATGAG 1616
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2059 AAAGGTCGGAGAGGTTCCTTTCAGCGGACAAACCGGGAGTAAACCGAGAAAACCGATGAG 2118
Query 1617 CGGTGATTTAGACCAATCTTTATTGCCATTACCACCTGAACCAGAGACTAATGTCTATAG 1676
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2119 TGGTGATTTAGACCAATCTTTATTGCCATTACCTCCTGAACCAGAGACTAATGTCTATAG 2178
Query 1677 CTTTGGAGTATTAATGCTTGAGATAATCTCTGGAAAGCTCTCAGATTCAGAAGAAGAAGG 1736
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2179 CTTTGGAGTATTAATGCTTGAGATAATCTCTGGAAAGCTCTCAGATTCAGAAGAAGAAGG 2238
Query 1737 ATCAATTCTAAAATGGGCATCAAAGTATCTGGAGAATGATAATTTGAGAGATATGATTGA 1796
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2239 ATCAATTCTAAAATGGGCGTCAAAGTATCTGGAGAATGATAATTTGAGAGATATGATTGA 2298
Query 1797 TCCTACACTAACAACGTTTAAAGAAGAAGAACTTGAAGCTATATGTGACGTGGCAAGACA 1856
||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2299 TCCTACACTAACAACGTATAAAGAAGAAGAACTTGAAGCTATATGTGACGTGGCACGACA 2358
Query 1857 CTGTCTGAAACTTGACGAAAGCCAAAGACCAAAAATGAAAGATGTGAT-CGAACAATTGA 1915
||||||||||||||||||||||||||||||||||||||| ||||| | | |||||||||
Sbjct 2359 TTGTCTGAAACTTGACGAAAGCCAAAGACCAAAAATGAAATATGTGGTTC-AACAATTGA 2417
Query 1916 AAGAAGTAATAAACATATCTCAAGAACAAGCAACACCAAGACTCTCTCCTCTTTGGTGGG 1975
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2418 AAGAAGTAATAAACATATCTCAAGAACAAGCAACACCAAGACTCTCTCCTCTTTGGTGGG 2477
Query 1976 CAGAGCTTGAGATCTTATCCTCTGAAGCTACATAA 2010
|||||||||||||||||||||||||||||||||||
Sbjct 2478 CAGAGCTTGAGATCTTATCCTCTGAAGCTACATAA 2512
Score = 929 bits (503), Expect = 0.0
Identities = 570/603 (95%), Gaps = 2/603 (0%)
Strand=Plus/Plus
Query 1 ATGGGTTGTCGATGGAATCCAATTGGGTTCCAATTCTCTTGCTTTATGTTCTTGATCATT 60
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 392 ATGGGTTGTCGATGGAATCCAATTGGGTTCCAATTCTCTTGCTTCATGTTCTTGATCATT 451
Query 61 ACCCTTCAATCTCGGTCCTCGTTATCCCTCGAATCCGAAGGATACATATTGTTGAAATTC 120
|| ||||||||||| || ||||| ||||||||||||||||||| ||||||||||||||
Sbjct 452 ACTCTTCAATCTCGTTCTTCGTTGTCCCTCGAATCCGAAGGATTTGTATTGTTGAAATTC 511
Query 121 CGGGAAAGAGTTGATTCTGATCCTCATGGAACTCTTGCAAATTGGAATGTTTCTGATCAT 180
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 512 CGGGCAAGAGTTGATTCTGATCCTCATGGAACTCTTGCAAATTGGAATGTTTCTGATCAT 571
Query 181 GATCATTTGTGTTCTTGGTTTGGTGTTACGTGTGTCGACAATAAAGTGAAGATGCTGAAT 240
|||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 572 GATCATTTCTGTTCTTGGTTTGGTGTTACGTGTGTCGACAATAAAGTGCAGATGCTGAAT 631
Query 241 CTTAGTGGTTGTTCTTTGGGAGGAACTTTAGCTCCTGAGCTTAGTCAATTGAGTGAATTA 300
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 632 CTTAGTGGTTGTTCTTTGGGAGGAACTTTAGCTCCGGAGCTTAGTCAATTGAGTGAATTA 691
Query 301 AGATCGCTAATACTATCCAAGAACAAACTCTCTGGTGACATTCCAAAGGAATTTGCGAAT 360
||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 692 AGATCTCTAATACTATCCAAGAACAAACTCTCTGGTGACATTCCAAACGAATTTGCGAGT 751
Query 361 TTCGC-AAAGCTAGAGTTCTTGGATTTGCGAGATAATAAGTTAAGCGGAGTAGTTCCACC 419
||||| ||| |||||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct 752 TTCGCGAAAT-TAGAGTTCTTGGATTTGCGAGATAATAACTTAAACGGAGTAGTTCCACC 810
Query 420 CGAGCTAAACAAAGTGTTGACACCGGAAAACTTGATGCTTTCTGGTAACAAATTTGCGGG 479
||||||||| |||||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct 811 CGAGCTAAATAAAGTGTTGACACCAGAAAACTTGTTGCTTTCTGGTAACAAATTTGCGGG 870
Query 480 TTTTATGGCCATAAAGTTCCTGAAACTTCAATCGCTATATAAAGTCCAGTTGAACAAGAA 539
||||||| || |||||||||||| |||||||||||| |||||||||||| ||||||||||
Sbjct 871 TTTTATGACCGTAAAGTTCCTGAGACTTCAATCGCTGTATAAAGTCCAGATGAACAAGAA 930
Query 540 CCGGGAGCTGTCTTCGGTTTCCGCTGATGTCCTTGACTGTGTAAATAGAAAACTTGGATA 599
|| ||||| ||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 931 TCGAGAGCTATCTTCGGTTTCCGCTGATGTCCTCGACTGTGTCAATAGAAAACTTGGATA 990
Query 600 CTG 602
|||
Sbjct 991 CTG 993
> AT4G18640.1 | Symbols: MRH1 | Leucine-rich repeat protein kinase
family protein | chr4:10259678-10263764 FORWARD LENGTH=2861
Length=2861
Score = 857 bits (464), Expect = 0.0
Identities = 1090/1382 (79%), Gaps = 83/1382 (6%)
Strand=Plus/Plus
Query 668 AAACTAG-TATCTTCAAAAGGCGTGAGTTACTCGAGGGA-ACAAGCAATTTAGCGGCT-A 724
||||| | ||||| |||| | |||||| ||||||| ||| ||||| |||||||||||| |
Sbjct 1329 AAACT-GATATCTACAAACGACGTGAGCTACTCGA-GGAGACAAGTAATTTAGCGGCTGA 1386
Query 725 TGCCGGCGCC-TGATGCGCCTAGTCCTTCTCCTGAGATTGTAACCAG-AGTGTT-TCCTC 781
||| || || | | || |||||||||||||| | |||| ||| | | || || ||||
Sbjct 1387 -GCCTGCTCCTTCA-GCTCCTAGTCCTTCTCCCGGGATTATAA-CTGAAG-CTTCACCTC 1442
Query 782 GAAGCAGCGGGTCTTTTCCC-GCATTAACTAATGCAAAGAAGAGAATACCACCATTGA-T 839
||||||||||||| |||||| ||| |||| |||||||||||||||| |||||| || | |
Sbjct 1443 GAAGCAGCGGGTC-TTTCCCTGCAGTAACCAATGCAAAGAAGAGAAGACCACC-TTTAGT 1500
Query 840 CTCTCCT-T--CTTCTCCT--TCTCCGC-CTACCA-ACAACACCATCGCTAATG-ATCCA 891
| ||||| | |||||||| | || ||| | | | ||| |||| | || ||
Sbjct 1501 CCCTCCTGTACCTTCTCCTGATAAGGGCAGTACTAGTCCTGA-TATCTCTAA-GAAT-CA 1557
Query 892 -CCGAGGAA-ATTCGAAGAAA-AATCGAAAGGGTTTAAGGACGTTTGGTTGTATGTTGTT 948
|| | || | | || ||| | || ||||| | || | || ||| ||||||| |||
Sbjct 1558 GCC-A-CAAGA-T--AATAAACAGTCAAAAGGATCAAAACATGTATGGCTGTATGTGGTT 1612
Query 949 ATTG-GTGTTGCTGCTTTCATAGCG-ATGCTGATAATTGTAGCGGTTATATTCTTCTTCC 1006
|| | | |||||| ||||| | | | | ||||| || ||||||||||| ||||||| ||
Sbjct 1613 ATCGCG-GTTGCTTCTTTCGTCG-GTTTACTGATTATAGTAGCGGTTATCTTCTTCTGCC 1670
Query 1007 GGAAAAGAGCTGTGAAGAGTATAGGTCCATGGAAGACTGGT-TTGAGTGGACAATTGCAG 1065
||||||||||||| ||||| |||||||| ||||| |||||| || |||||||||||||||
Sbjct 1671 GGAAAAGAGCTGTCAAGAGCATAGGTCCTTGGAAAACTGGTCTT-AGTGGACAATTGCAG 1729
Query 1066 AAAGCTTTTGTTACTGGTGTACCTAAGCTAAACCTGTCTGAACTAGAAACAGCCTGTGAA 1125
|||||||||||||| || ||||| ||||| || | |||||| || |||||||| ||||||
Sbjct 1730 AAAGCTTTTGTTACCGGGGTACCAAAGCTCAATCGGTCTGAGCTTGAAACAGCGTGTGAA 1789
Query 1126 GATTTCAGTAATATCATTGAAG-CATTTGATGGTTACACTGTCTATAAAGGAACTTTGTC 1184
|||||||| || ||||| | || ||||||| ||||||||||| ||||||||||| |||||
Sbjct 1790 GATTTCAGCAACATCATAG-AGACATTTGACGGTTACACTGTGTATAAAGGAACATTGTC 1848
Query 1185 AAGTGGCGTTGAGATTGCGGTTGCTTCAACCGCGATT-TTGGAAACTAGAGAATGGACAA 1243
||||| |||||||| ||||| ||||||||||||||| | ||| ||| |||||||||||
Sbjct 1849 GAGTGGTGTTGAGATAGCGGTAGCTTCAACCGCGATTGCT-GAATCTAAAGAATGGACAA 1907
Query 1244 GAGCTATGGAAATGACTTACCGCAGAAGGATTGATACAATGTCA-AGAGTCAACCATAAG 1302
|||| ||||||||| | ||||| |||| ||||||||| ||||| || |||||||||||
Sbjct 1908 GAGCCATGGAAATGGCATACCGTAGAAAGATTGATACTCTGTCACGGA-TCAACCATAAG 1966
Query 1303 AACTTTGTGAATCTAATTGGATATTGCGAAGAAGATGAACCGTTTAATAGGATGATGGT- 1361
|||||||||||||| |||||||| |||||||||||||| || |||||||||||||||||
Sbjct 1967 AACTTTGTGAATCTGATTGGATACTGCGAAGAAGATGATCCTTTTAATAGGATGATGGTC 2026
Query 1362 TTTCGAATATGCTCCAAATGGAACTCTTTTCGAACATTTGCACGATAAGGAAATGGAACA 1421
||| ||||||||||||||||||||||||||||||||||||||||||||||| | || ||
Sbjct 2027 TTT-GAATATGCTCCAAATGGAACTCTTTTCGAACATTTGCACGATAAGGAGACAGAGCA 2085
Query 1422 TCTTGATTGGAACGCGA-GGATGAGGATAATAATGGGAACTGCTTATTGTCTGCAATATA 1480
||||||||||| ||| | ||||||| |||||||||||||| ||||| ||||| ||| |||
Sbjct 2086 TCTTGATTGGAGCGC-ACGGATGAGAATAATAATGGGAACGGCTTACTGTCTTCAACATA 2144
Query 1481 TGCACGAGCTTAATCCGCCAATCTCACACACTAAACTTGTCT-CATCAGCAATCTACTTA 1539
|||||| | | || ||||| || | || || | ||| | |||| | ||||||| ||
Sbjct 2145 TGCACGGGATGAACCCGCCTATGGCTCATACGGA-CTTCAATTCATCGGAAATCTACCTA 2203
Query 1540 ACAGATGATTACGCAGCAAAGGTC--GGAGAGGTTCCTTTCAGCGGACAAACCGGGAGTA 1597
|| ||||| |||||||| |||||| ||||| |||| |||| | | | | | | ||
Sbjct 2204 ACCGATGACTACGCAGCCAAGGTCTCGGAGA--TTCCATTCAACTTAGAGGCAAG-ATTA 2260
Query 1598 AA-CCGA-GAAA-ACCGATGAGCGGTGATTTAGACCAATCTTTATTGCCATTACCACCTG 1654
|| |||| |||| || | |||| || || ||||| ||| | | |||| | |||| || |
Sbjct 2261 AATCCGAAGAAACAC-G-TGAGTGGAGACTTAGAGCAAACGTCATTGTTACTACCTCCAG 2318
Query 1655 AACCAGAGACTAATGTCTATAGCTTTGGAGTATTAATGCTTGAGATAATCTCTGGAAAGC 1714
|||| ||| |||| ||| ||||||| ||||| | ||||| || || |||||||||||||
Sbjct 2319 AACCGGAGGCTAACGTCCATAGCTTCGGAGTCCTGATGCTCGAAATCATCTCTGGAAAGC 2378
Query 1715 TCTCAGAT-TCAGAAGAAGAAGGATCAATTCTAA-AATGGGCATCAAAGTATCTGGAGAA 1772
|||| | ||||| ||| | ||||| || | | |||||||||| ||||| || || ||
Sbjct 2379 TCTCTT-TCTCAGACGAATACGGATCTAT-CGAGCAATGGGCATCGAAGTACCTTGAAAA 2436
Query 1773 TGATAATTTGAGAGATATGATTGATCC-TACACTAACA-ACGTTTAAAGAAGAAGAACTT 1830
|| | ||| |||| ||||| ||||| | | ||| | || || |||||||| || |||
Sbjct 2437 AGACGACTTGGGAGAGATGATAGATCCAT-CGTTAA-AGACATTCAAAGAAGAGGAGCTT 2494
Query 1831 GAAGCT-ATATGTGACGTGGCAAGACACTGTCTGAAA-CTTGA-CGAAAGCCAAAGACCA 1887
|||| | || || || ||| | || | ||||||||| | || | | || ||| ||||
Sbjct 2495 GAAG-TGATCTGCGATGTGATACGAGAATGTCTGAAAACA-GAAC-AGAGACAACGACCT 2551
Query 1888 AAAATGAAAGATGTGATCG-AACAATTGAAAGAAGTAATAAACATATCTCAAGA-ACAAG 1945
|||||||||||| | || ||||| ||||| |||| || |||||| ||| || | |||
Sbjct 2552 TCAATGAAAGATGT-AGCGGAACAACTGAAACAAGTTATCAACATAACTCCTGAGA-AAG 2609
Query 1946 CAACACCAAGACTC-TCTCCTCTTTGGTGGGCAGAGCTTGAGATCTTATCCTCTGAAGCT 2004
| || |||||| || ||||||||||||||||||||||| || ||||| ||||||||||||
Sbjct 2610 CTACTCCAAGA-TCCTCTCCTCTTTGGTGGGCAGAGCTCGAAATCTTGTCCTCTGAAGCT 2668
Query 2005 AC 2006
||
Sbjct 2669 AC 2670
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 99597881280
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5