BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494400
Length=1421
Score E
Sequences producing significant alignments: (Bits) Value
AT5G45820.1 | Symbols: CIPK20, SnRK3.6, PKS18 | CBL-interacting... 2287 0.0
> AT5G45820.1 | Symbols: CIPK20, SnRK3.6, PKS18 | CBL-interacting
protein kinase 20 | chr5:18586980-18588543 REVERSE LENGTH=1564
Length=1564
Score = 2287 bits (1238), Expect = 0.0
Identities = 1364/1425 (96%), Gaps = 8/1425 (1%)
Strand=Plus/Plus
Query 1 AATGGATAAAAACGGCATCGTTTTGATGCGAAAATACGAATTAGGTCGACTTCTAGGTCA 60
|||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||
Sbjct 143 AATGGATAAAAACGGCATAGTTTTGATGCGAAAATATGAATTAGGTCGTCTTCTAGGTCA 202
Query 61 AGGCACTTTTGCAAAAGTGTACCACGCACGCAACATAAAAACAGGAGAAAGCGTAGCGAT 120
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 203 AGGCACATTCGCAAAAGTGTACCACGCACGCAACATAAAAACAGGAGAAAGCGTAGCGAT 262
Query 121 CAAGGTGATCGACAAACAGAAAGTCGCGAAAGTCGGATTAATCGATCAAATCAAACGAGA 180
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 263 CAAGGTGATCGACAAACAGAAAGTTGCGAAAGTCGGATTAATCGATCAAATCAAACGAGA 322
Query 181 AATCTCAGTGATGCGTCTCGTTCGTCACCCAAACGTTGTCTTCCTCCATGAAGTAATGGC 240
||| |||||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct 323 AATATCAGTGATGCGTCTCGTTCGTCACCCCCACGTCGTCTTCCTCCATGAAGTAATGGC 382
Query 241 GAGCAAAACAAAGATCTATTTCGCTATGGAATACGTTACAGGCGGAGAGCTTTTTGATAA 300
|||||| ||||||||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct 383 GAGCAAGACAAAGATCTATTTCGCTATGGAATACGTTAAAGGCGGTGAGCTTTTTGATAA 442
Query 301 AGTCTCTAAAGGAAAGCTTAAAGAAGACATTGCTCGAAAATATTTCCAGCAATTGATCGG 360
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 443 AGTCTCTAAAGGAAAGCTTAAAGAAAACATTGCTCGAAAATATTTCCAGCAATTGATCGG 502
Query 361 AGCAATCGATTATTGCCATAGCCGCGGAGTTTACCACCGCGATCTCAAACCGGAGAATCT 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 503 AGCAATCGATTATTGCCATAGCCGCGGAGTTTACCACCGCGATCTCAAACCGGAGAATCT 562
Query 421 TCTTCTAGACGAAAACGGCGATCTGAAAATATCCGATTTCGGGCTTAGCGCTTTGAGGGA 480
|||||||||||||||||||||| |||||||||| ||||| || |||||||| ||||||||
Sbjct 563 TCTTCTAGACGAAAACGGCGATTTGAAAATATCGGATTTTGGCCTTAGCGCGTTGAGGGA 622
Query 481 GTCGAAGCAACAAGATGGCTTGCTGCACACGACATGTGGAACACCTGCTTACGTGGCACC 540
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 623 GTCGAAGCAGCAAGATGGCTTGCTTCACACGACATGTGGAACACCTGCTTACGTGGCACC 682
Query 541 TGAAGTGATCGGCAAGAAAGGTTATGATGGAGCGAAAGCCGATGTTTGGTCTTGTGGGGT 600
||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 683 TGAAGTGATAGGCAAGAAAGGTTATGATGGAGCTAAAGCCGATGTTTGGTCTTGCGGGGT 742
Query 601 TGTGTTGTATGTGTTATTAGCTGGATTTCTTCCGTTTCACGAGCAAAATCTTGTTGAAAT 660
||||||||| ||| |||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 743 TGTGTTGTACGTGCTATTGGCTGGATTTCTTCCGTTTCACGAGCAAAATCTTGTGGAAAT 802
Query 661 GTATCGGAAAATCACAAAAGGCGAATTCAAATGCCCAAATTGGTTTCCTCCCGAGGTCAA 720
||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||
Sbjct 803 GTATCGGAAAATCACGAAAGGCGAATTCAAATGTCCGAATTGGTTTCCTCCCGAGGTCAA 862
Query 721 GAAGTTGTTGTCTCGGATTCTTGACCCTAACCCTAATTCAAGAATCAAGATCGACAAAAT 780
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 863 GAAGTTGTTGTCTCGGATTCTTGACCCTAACCCTAATTCAAGAATCAAGATTGAAAAAAT 922
Query 781 CATGGAGAATTCTTGGTTTCAAAAGGGTTTCAAGAAGATCGAAACGCCTAAATCTCCCGA 840
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 923 CATGGAGAATTCCTGGTTTCAAAAGGGTTTCAAGAAGATCGAAACGCCTAAATCTCCCGA 982
Query 841 TAGTCATCAGATCGACTCACTGATCAGCGATGTCCACGCAGCGTTTTCCGTAAAACCGAT 900
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 983 AAGTCATCAGATCGACTCACTGATCAGCGATGTCCACGCAGCTTTTTCCGTAAAACCGAT 1042
Query 901 GTCTTACAACGCGTTTGACTTAATCTCTTCGCTGTCTCAAGGATTCGATCTCTCGGGTTT 960
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1043 GTCTTACAACGCGTTTGACTTGATCTCTTCGCTGTCTCAAGGATTCGATCTCTCGGGTTT 1102
Query 961 GTTTgagaaagaagagagatcagaatcgaagtttacaacgaagaaagaagcgaaagagaT 1020
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 1103 GTTTGAGAAAGAAGAGAGATCAGAATCGAAGTTTACAACGAAGAAAGATGCAAAAGAGAT 1162
Query 1021 AGTGTC-AAAGTTCGAGGAGATAGCATTAAGTAGTGAAAGATTCAATTTGACGAAGAGCA 1079
|||||| ||| ||||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct 1163 AGTGTCGAAA-TTCGAGGAGATAGCAACAAGTAGTGAGAGATTCAATTTGACGAAGAGCG 1221
Query 1080 ATGTAGGAGTGAAGATGGAAGATAAAAGAGAAGGAAGAAAAGGACAGCTTGCGATTGATG 1139
||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 1222 ATGTAGGAGTGAAGATGGAAGATAAGAGAGAAGGAAGAAAAGGACATCTTGCGATTGATG 1281
Query 1140 TTGAGATATTTGAAGTGACAAAGAGTTTTCATATGGTAGAGTTTAAGAAAAGTGGAGGTG 1199
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 1282 TTGAGATATTTGAAGTGACAAATAGTTTTCATATGGTTGAGTTTAAGAAAAGTGGAGGTG 1341
Query 1200 ATACAATGGAGTATAAGCAATTTTGTGATCGTGAGCTTAAGCCTTCTTTGAAAGATATTG 1259
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1342 ATACAATGGAGTATAAGCAATTTTGTGATCGTGAGCTTAGGCCTTCTTTGAAAGATATTG 1401
Query 1260 TTTGGAAATGGCAAGGAAACAACAACAATAGCAACAATGAGAAGATTGAAGTGATAAATT 1319
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1402 TTTGGAAATGGCAAGGAAACAACAACAATAGCAACAATGAGAAGATTGAAGTGATACATT 1461
Query 1320 AAATCTGTTTTTCATCTTAAGATTTT-CTTGATTTGGTTGTTTTTCTTTTA-ATCTCTGT 1377
|||| |||||||||||||| ||||| || ||||||||||||||||||| | ||||| ||
Sbjct 1462 AAATGTGTTTTTCATCTTAT-ATTTTTCTGGATTTGGTTGTTTTTCTTT-AGATCTCCGT 1519
Query 1378 GTAAAATG-TGAGATTTATGATAATGGCTGCAATCATCATCACAT 1421
|||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 1520 GTAAAA-GATGAGATTTATGATAATGGCTGCAATCATCATCACAT 1563
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70029760275
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5