BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494402
Length=2175
Score E
Sequences producing significant alignments: (Bits) Value
AT5G45800.1 | Symbols: MEE62 | Leucine-rich repeat protein kina... 3134 0.0
> AT5G45800.1 | Symbols: MEE62 | Leucine-rich repeat protein kinase
family protein | chr5:18575536-18579107 REVERSE LENGTH=2365
Length=2365
Score = 3134 bits (1697), Expect = 0.0
Identities = 2044/2207 (93%), Gaps = 41/2207 (2%)
Strand=Plus/Plus
Query 1 CTTCTCTGATAAACCTCACCAGCTCCTCTCAAATACTGCAACTACTAAACCctctctctc 60
||| |||||||||||||||||||||||||||||| ||||||| |||||| || |||||||
Sbjct 1 CTTTTCTGATAAACCTCACCAGCTCCTCTCAAATTCTGCAACAACTAAA-CC-CTCTCTC 58
Query 61 tctctctctctctctttctctctctTCACCATTTCTTTATCTTCCATGGAAAAACAATCA 120
||||||||||| || || ||||||||||||||||||||||||||||||||| |||| ||
Sbjct 59 TCTCTCTCTCTATC-TT-TCTCTCTTCACCATTTCTTTATCTTCCATGGAAGAACAGTCT 116
Query 121 TCAACAACAAACTAAAAACATGTTTCTAAAGTTGTTTCTTCTCTTGTCTTTGGTCTCCTT 180
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 117 TCAACAACAAACTAAAAACATGTTTCTAAAGTTGTTTCTTCTCTTATCTTTGGTCTCCTT 176
Query 181 CTCACACTCAGA--C-TCTTCCACAGTTTCTTGTCCTAACGGCACAGACTTCCGTCAATT 237
|||||||||||| | ||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 177 CTCACACTCAGACTCTTCTTCCACAGTTTCTTGTCCTAACGGCACAGACTTCCATCAACT 236
Query 238 AACCAGAGTTTTCCGTTACGTCTCCGGCTTCAACTCTTCTTGGTTCTCCTCTAACTGCTC 297
||||| |||||| |||||||||||||| ||||||||||| ||||||||||| ||||||||
Sbjct 237 AACCACAGTTTTTCGTTACGTCTCCGGTTTCAACTCTTCCTGGTTCTCCTCAAACTGCTC 296
Query 298 CGCCGTCATCACTCACGTCGTTCTTCCGTCGAG-AAACTTAAACGGCACCGTTTCTTGGA 356
|||||| ||||||||||||||||||||||| || |||| |||||||||||||||||||||
Sbjct 297 CGCCGTTATCACTCACGTCGTTCTTCCGTCAAGAAAAC-TAAACGGCACCGTTTCTTGGA 355
Query 357 ACCCTTTACGTAATCTCACGCGCTTACGTGTTCTTGATCTCTCCAACAACTCTCTCGATG 416
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 356 ACCCTATACGTAATCTCACGCGCTTACGTGTTCTTGATCTCTCCAACAACTCTCTCGATG 415
Query 417 GTTCTCTTCCCACTTGGCTCTGGTCTAAACCCGGTCTTGTCTCTGTTAATCTCTCCCGGA 476
||||||||||||||||||||||||||| || ||||||||||| ||||||||||| ||||
Sbjct 416 GTTCTCTTCCCACTTGGCTCTGGTCTATGCCAGGTCTTGTCTCCGTTAATCTCTCTCGGA 475
Query 477 ATCGGTTTGGTGGCTCTATACGAGTGATTCC-GTTTAACAGTTCGGTTTTGTCTTCGGTT 535
| ||||||||||||||||||||||||||||| | |||| |||||||||||||| |||||
Sbjct 476 ACCGGTTTGGTGGCTCTATACGAGTGATTCCAG-TTAATGGTTCGGTTTTGTCTGCGGTT 534
Query 536 AAGGAGTTGAATCTCTCGTTCAATCGGTTT-ACCAACGCGGTAAACCTAACCGGGTTTAC 594
|||||||||||||||||||||||||||||| | | ||||||| ||| | ||||| |||||
Sbjct 535 AAGGAGTTGAATCTCTCGTTCAATCGGTTTAAAC-ACGCGGTTAACTTTACCGGATTTAC 593
Query 595 TAACCTCACATCTCTCGATCTTTCGCATAACAATCTCGGTGTTTTGCCTCTTGGTTTGGG 654
||||||||| |||||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct 594 CAACCTCACAACTCTCGATCTTTCGCACAACAGTCTCGGTGTTTTGCCTCTTGGTTTGGG 653
Query 655 TTTTCTCTCCGGTTTACGCCACCTTGATCTCTCCAGATGTAAAATCAATGGCAGTATTAA 714
|| ||| || |||||||||||||||||| | |||||||||||||||||||| ||| ||||
Sbjct 654 TTCTCTATCGGGTTTACGCCACCTTGATATATCCAGATGTAAAATCAATGGTAGTGTTAA 713
Query 715 ACCAATTTCCGGTTTAAAGTCATTGAACTACTTGGATATGTCGGAGAACTCAATGAACGG 774
||| ||||||||||||||||| ||| | ||||||||| | ||||||||||||||||||||
Sbjct 714 ACCGATTTCCGGTTTAAAGTCGTTGGATTACTTGGATTTATCGGAGAACTCAATGAACGG 773
Query 775 TTCGTTCCCGGTTGATTTTCCGAATTTAAACCATCTCCAGTTCTTGAATTTATCTGCAAA 834
||||||||||||||| ||||||||| | ||||||||||| ||||||||||||||||||||
Sbjct 774 TTCGTTCCCGGTTGACTTTCCGAATCTCAACCATCTCCAATTCTTGAATTTATCTGCAAA 833
Query 835 CCGGTTTTCCGGTTCGGTCGGATTTGACAAATACCGAAAATTCGGAAAATCGGCCTTCTT 894
|||||||||||||||||| |||||||||||||||||||||||||| ||||| || |||||
Sbjct 834 CCGGTTTTCCGGTTCGGTTGGATTTGACAAATACCGAAAATTCGGTAAATCAGCATTCTT 893
Query 895 ACACGGTGGCGATTTCGTCTTCAACGATTCCAAAATCCC---T-A--ACC--A-CCACCG 945
|||||| |||||||||||||||||||||||||||||||| | | ||| | ||||||
Sbjct 894 ACACGGCGGCGATTTCGTCTTCAACGATTCCAAAATCCCTTATCACCACCGTATCCACCG 953
Query 946 TCT--C-CA-C--CAT-------C--TGCGTCATCGAACCGTCAAAACGCATCGTTTAAA 990
||| | || | ||| | ||||||| |||| ||| |||||||| ||| |||
Sbjct 954 TCTACCACACCGGCATCCGCCACCAGTGCGTCAACGAAACGTTAAAACGCACCGTACAAA 1013
Query 991 ACGCACTCCTTTGGTGATTGGTTTATCGTCTTCGTTAGGAGCTTTGATAATCCTAATCCT 1050
| |||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |
Sbjct 1014 TCACACTCCTTTGGTGATTGGCCTATCGTCTTCGTTAGGAGCTTTGATAATCGTAATCTT 1073
Query 1051 CGCGGTGGCTATAATTTTAATCCGCCGGAAAATGAAATCGGCGAGGACGAAATCGAGATG 1110
||| | ||||||||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct 1074 CGCTGCGGCTATAATTTTAATCCGCCGGAGAATGAAATCGGCGAGAACGAAATCGAGATG 1133
Query 1111 GGCGATTTCGAATCCTACACCGTTAGATTTCAAAATGGAGAAATCTGGACCGTTCGAATT 1170
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1134 GGCGATTTCGAATCCTACACCGTTAGATTTCAAAATGGAGAAATCTGGACCGTTCGAATT 1193
Query 1171 CGGAACGGAGTCAGGTTCGTCGTGGGTCGCCGATATAAAAGAACCAACGGCGGCTCCGGT 1230
|||||||||||| ||||| || |||||||||||||||||||| |||||||||||||||||
Sbjct 1194 CGGAACGGAGTCTGGTTCTTCATGGGTCGCCGATATAAAAGAGCCAACGGCGGCTCCGGT 1253
Query 1231 TGTGATGGCATCTAAGCCGTTGATGAATCTGACTTTCAAGGATCTGATTGTTGCCACGTC 1290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1254 TGTGATGGCATCTAAGCCGTTGATGAATCTGACTTTCAAGGATCTGATTGTTGCCACGTC 1313
Query 1291 ACATTTCGGAACGGAGTCTGTTATATCTGACGGCACTTGTGGTCCACTTTACCGTGCCGT 1350
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 1314 ACATTTCGGAACGGAGTCCGTTATTTCTGACGGCACTTGTGGTCCACTTTACCGTGCCGT 1373
Query 1351 TTTACCCGGAGATCTCCACGTGGCAATCAAAGTTCTTGAGAGAATCAGAGACGTTGATCA 1410
|||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 1374 TTTACCAGGAGATCTCCACGTGGCAATTAAAGTGCTTGAGAGAATCAGAGACGTTGATCA 1433
Query 1411 AAACGACGCCGTTACTGCGTTTGAAGCTTTAACTCGGCTTAAACATCCAAATCTTTTGAG 1470
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1434 AAACGACGCCGTTACTGCGTTCGAAGCTTTAACTCGGCTTAAACATCCAAATCTTTTGAC 1493
Query 1471 TCTCTCCGGTTATTGCATCGCAGGAAAAGAGAAGCTTATATTATATGAGTTTATGGCTAA 1530
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1494 TCTCTCCGGTTATTGCATCGCAGGAAAAGAGAAGCTTATATTATATGAATTTATGGCTAA 1553
Query 1531 TGGAGATCTTCACCGATGGCTTCACGAGCTCCCGGCAGGAGAAACCAACGTGGAAGATTG 1590
|||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 1554 CGGAGATCTTCACCGATGGCTACACGAGCTCCCGGCGGGAGAAACCAACGTGGAAGATTG 1613
Query 1591 GAGTGCCGATACATGGGAAAGTCACGTCGGAGACTCATCGCCTGAGAAAACAAACTGGCT 1650
|||||||||||||||||| |||||||||||||||||||| || ||||||||||| |||||
Sbjct 1614 GAGTGCCGATACATGGGAGAGTCACGTCGGAGACTCATCACCGGAGAAAACAAATTGGCT 1673
Query 1651 AATACGTCACCGTATAGCCATTGGAGTTGCACGTGGTTTAGCCTATCTTCATCACGTTGG 1710
||||||||||||||| ||||| |||||||||||||||||||||||||| || ||||||||
Sbjct 1674 AATACGTCACCGTATCGCCATAGGAGTTGCACGTGGTTTAGCCTATCTACACCACGTTGG 1733
Query 1711 TACTACTCACGGACATTTGGTCGCTACCAACATCCTCCTAACCGAAACCCTAGAGCCGCG 1770
||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 1734 TACTACTCATGGACACTTAGTCGCTACCAACATCCTCCTAACCGAAACCCTAGAGCCGCG 1793
Query 1771 AATCTCTGATTTTGGTATAAACAACATCGCGAAAACCGGAGATGATACTAATAACAACAA 1830
||||||||||| ||||| |||||||| |||| ||||||||||||||||||||| |||||
Sbjct 1794 TATCTCTGATTTCGGTATCAACAACATTGCGAGAACCGGAGATGATACTAATAAAAACAA 1853
Query 1831 TGTAGAATTCGATGTGTATAGTTTCGGGGTGATTTTATTTGAGCTATTAACGGGGAAGCA 1890
|||||||||||||||||||||||||||||||||||| |||||| ||||||| ||||||||
Sbjct 1854 TGTAGAATTCGATGTGTATAGTTTCGGGGTGATTTTGTTTGAGTTATTAACCGGGAAGCA 1913
Query 1891 AGGGAGGGATGAGAATGTTAAATCGGTTCGACGGTTGGTTAAGGAGAGAAGAGGAGAGGA 1950
|||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 1914 AGGGAGTGATGAGAATGTTAAATCCGTTCGCCGGTTGGTTAAGGAGAGAAGAGGAGAGGA 1973
Query 1951 AGCTCTTGACTCGAGATTGCGGTTAGCGGTTGGAGAATCGGTTAATGAGATGGTCGAGAG 2010
||||||||||||||||||||||||||| | |||||||||||||||||||||||| |||||
Sbjct 1974 AGCTCTTGACTCGAGATTGCGGTTAGCTGCTGGAGAATCGGTTAATGAGATGGTAGAGAG 2033
Query 2011 TCTTCGGATTGGTTATTTTTGCACCGCGGAGACGCCGG-GAAAACGACCAACAATGCAAC 2069
|||||| |||||||| |||||||| ||||||||||| | ||| ||||||||||||||||
Sbjct 2034 TCTTCGAATTGGTTACTTTTGCACGGCGGAGACGCCAGTGAAG-CGACCAACAATGCAAC 2092
Query 2070 AAGTCTTGGGTCTTCTTAAAGACATACGTACGGTTTCACGTTGAGTTAGGAAGAAAGAAA 2129
| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2093 AGGTCTTGGGTCTTCTTAAAGACATACGTACGGTTTCACGTTGAGTTAGGAA-AAAGAAA 2151
Query 2130 GTTGGGTTTA-GATAAATCATGTGAGTATTAGATTCCGGTGTTGTTG 2175
|||||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct 2152 GTTGGGTTTAAGATAAATCATGTGAGTATTAGATTCGGGTGTTGTTG 2198
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 107880971205
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5