BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494406
Length=1274
Score E
Sequences producing significant alignments: (Bits) Value
AT5G45770.1 | Symbols: AtRLP55, RLP55 | receptor like protein 5... 1838 0.0
> AT5G45770.1 | Symbols: AtRLP55, RLP55 | receptor like protein
55 | chr5:18563568-18564921 FORWARD LENGTH=1354
Length=1354
Score = 1838 bits (995), Expect = 0.0
Identities = 1199/1294 (93%), Gaps = 28/1294 (2%)
Strand=Plus/Plus
Query 1 ATGAAACCGCAGCAACCGCAACCGTCATTGctcctcctcctcctcct--c-ctTCTCTTA 57
||||||||||||||||| |||||| |||||||||||||||||||||| | |||||||||
Sbjct 1 ATGAAACCGCAGCAACCACAACCGCCATTGCTCCTCCTCCTCCTCCTCCCACTTCTCTTA 60
Query 58 GCCACCGTCTCCGCCTCTCCACTACACCCAAAACAGCTCAAATCTCTCCAATCTTTAAAC 117
||||||||||| ||| ||||||| ||||||||||||||||| |||||||||| | |||
Sbjct 61 ACCACCGTCTCCTCCTATCCACTAAACCCAAAACAGCTCAAAGCTCTCCAATCACTCAAC 120
Query 118 ATCTCTACACCAACCAATGATCCCTG------CAACAACAACCAATCCTCCTCCACCTCC 171
|||||||||||||| ||||||||||| |||||||||||||||||||||| | |||
Sbjct 121 ATCTCTACACCAACTAATGATCCCTGCAACAACAACAACAACCAATCCTCCTCCTCGTCC 180
Query 172 ATAACTTGCGACAACGCTTCTCCTTACCGCCACATAACctctctctccttcacaaactgc 231
|||||||||||| |||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 181 ATAACTTGCGACGACGCTTCTCCTTACCGCCACATCACCTCAATCTCCTTCACAAACTGC 240
Query 232 tcctccactctatctctcccctccaaaaccctcaaaccactctcaaaatctctcctctct 291
||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct 241 TCCTCCACTCTATCTCTCCCCTCCAAAACACTCAAACCACTCTCAAAATCTCTCATCTCC 300
Query 292 ctctcctTCAAC-AACTGCCCTTCACTTtctcctccataccatctcccaatctccctcca 350
||||| ||| || |||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 301 CTCTCTTTC-ACTAACTGCCCTTCACTCTCTCCTCCATACCACCTCCCAATCTCCCTCCA 359
Query 351 ctccttctccgccgtctcctccttcctccaCAACAACCGTACCCGCCTCTCCGGCCTCTT 410
|||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct 360 CTCCTTCTCCGCCGTCTCCTCCTTCCTCCAAAACAACCGTACCAAACTCTCCGGCCTCTT 419
Query 411 CCTCGCTCGTCTCAAAAACCTCAAAACCCTCTACATTTCCTCAACCCCAATCTC-AACCT 469
|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 420 CCTCGCTCGTCTCAAAAACCTCAAAACCCTCTACATTTCCTCAACCCCAATC-CAAACCT 478
Query 470 CTCGTCGTCTTTATGTAATCCTCGGAAACATGCATAAACTCACTTCCCTCACAATCTCAA 529
|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 479 CTCGTCGTCTTTATGTCATCCTCGGAAACATGCATAAACTCACTTCCCTCACTATCTCAA 538
Query 530 ACTCAAATCTCTCCGGCTTTATTCCTAAATCTTTCCACTCAAATCTTACATACATCGATT 589
||||||||||| | ||| |||| ||||||||||||||||||||||| | |||||| ||||
Sbjct 539 ACTCAAATCTCACTGGCCTTATCCCTAAATCTTTCCACTCAAATCTCAGATACATAGATT 598
Query 590 TATCAAACAATTCACTCAAAGGCTCAATACGCATTTCCATTACTCGTCTCACAAACCTCA 649
|||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 599 TATCAAACAACTCACTCAAAGGCTCAATACGCATTTCCATTACTCGTCTCAAAAACCTCA 658
Query 650 AGTCCTTAAACTTATCTCATAACTCTCTCTCTGGCCAAATACCAAACAAAATCAAAAGCT 709
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 AGTCCTTAAACTTATCTCATAACTCTCTCTCTGGCCAAATACCAAACAAAATCAAAAGCT 718
Query 710 TAATCTTT-CTAAAAAACTTATCTTTAGCTTCAAACAGATTAACAGGAACAATCCCAAAT 768
||| |||| |||||||||||||||||||||||||||| | || |||||||||||||||||
Sbjct 719 TAA-CTTTTCTAAAAAACTTATCTTTAGCTTCAAACAAACTATCAGGAACAATCCCAAAT 777
Query 769 TCACTCTCGTCAATTTCTGAACTTACACATTTGGATCTAAGCATGAATCAACTAAACGGC 828
|||||||| || || |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 778 TCACTCTCATCTATCTCTGAACTTACACATTTGGATCTAAGTATGAATCAACTAAACGGA 837
Query 829 ACGGTTCCAAGTTTCTTCTCCGAGATGAAGAATCTCAAACACTTGAATCTCGCTGATAAC 888
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 838 ACCGTTCCAAGTTTCTTCTCCGAGATGAAGAACCTCAAACACTTGAATCTCGCTGATAAC 897
Query 889 TTCTTCCATGGAGTTTTACCATTCAACGAAAGCTTCATTAAAAATCTCAACTTTTTCGAA 948
| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 898 TCCTTCCATGGAGTTTTACCATTCAACGAAAGCTTCATCAAAAATCTCAACTTTTTCGAA 957
Query 949 ATTGGAGGGAACAGTGAGCTCTGTTACAACAAAACTGTTGTATCCTCGAACTTGAAATTG 1008
|||||| ||||||||||||||||||| |||||||||||| | ||||||||||||||||||
Sbjct 958 ATTGGAAGGAACAGTGAGCTCTGTTATAACAAAACTGTTCTCTCCTCGAACTTGAAATTG 1017
Query 1009 GAGGGTCTTGCTCCGTGTGATAAATATGGTTTTCCTTTATGGTCTCCGTCGCAAAAGGAG 1068
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1018 GAGGGTCTTGCTCCGTGTGATAAATACGGTTTTCCTTTATGGTCTCCGTCGCAAAAGGAG 1077
Query 1069 GAATCTTTGTCAGGAGAAAACGATTACGGCGATTACAACGGTg--aaggagga-aatga- 1124
|||||||||||||||||||||||||||| || || || || | || ||||| || ||
Sbjct 1078 GAATCTTTGTCAGGAGAAAACGATTACGACG-TTG-AA-GGAGGCAATGAGGAGAA-GAC 1133
Query 1125 gaaga-t--gacgaagaag-aaggaagaagaagaagaaCACAATGGTTCCAACAAGACTC 1180
| ||| | || || |||| ||| ||||||||||||||||||| ||||||||||||||||
Sbjct 1134 GGAGAATCTGAAGACGAAGGAAG-AAGAAGAAGAAGAACACAAAGGTTCCAACAAGACTC 1192
Query 1181 TGTTTGGTCTCGGCATTGGTCTTTTTTCGATTGTGTTCTTAATCCTCTTCCTCTTTTATC 1240
||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 1193 TGTTTGGTCTCGGCATTGGTCTTTTCTCGCTTGTGTTCTTAATCCTCTTCCTCTTTTATC 1252
Query 1241 TTGCTAAAAGGTGTCGTTGGATTTGAGAAGTCTG 1274
| |||||||||||||||| |||||||||||||||
Sbjct 1253 TCGCTAAAAGGTGTCGTTTGATTTGAGAAGTCTG 1286
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62650280160
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5