BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494408
Length=1194
Score E
Sequences producing significant alignments: (Bits) Value
AT5G45760.1 | Symbols: | Transducin/WD40 repeat-like superfami... 1661 0.0
> AT5G45760.1 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr5:18561111-18563195 FORWARD LENGTH=1283
Length=1283
Score = 1661 bits (899), Expect = 0.0
Identities = 1040/1108 (94%), Gaps = 10/1108 (1%)
Strand=Plus/Plus
Query 1 ATGGCAATGGCAATGGAGGAGCCAAGGAAGCTGAGAGGCCACAAATCAACTGCCACTTGT 60
||||| | ||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 11 ATGGCTACGGCAATGGAAGAGCCAAGGAAGCTGAGAGGCCACAAATCAACTGCCACTTGT 70
Query 61 TGTATAGCTTCTCGTGACCGGCCTGGACTTGTTCTCACTTCTGGCGAGGATGGTTGCGTT 120
||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| ||
Sbjct 71 TGTATAGCTTCTCGTGACCGGCCTGGAATTGTTCTCACTTCCGGCGAGGATGGTTGCATT 130
Query 121 TGCTGGTTTGATTTACGGTGTAAAGATGTTCAATTCATCATTGACGTTGGAACAGAACCG 180
|||||||||||||| || ||||||||||||||||||||||| || ||||||||||||||
Sbjct 131 TGCTGGTTTGATTTGCGATGTAAAGATGTTCAATTCATCATCGATGTTGGAACAGAACCA 190
Query 181 GTTTCATCTCTTTGTTTCAAGACAGGTTATGAGAACATTCTCTATGCTTCTCATGGAAAC 240
||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 191 GTTTCATCTCTTTGTTTCAAGACAGGTAATGAGAACATTCTCTATGCTTCTTGTGGAAAC 250
Query 241 GAAATCAAGTCTTTCGATGTTCATACGCTGAGTGCTAATTCATGGAAGCCATTAGAGAGT 300
||||||||||||||||||||||||||||| ||||||| ||| ||||||||||||||||||
Sbjct 251 GAAATCAAGTCTTTCGATGTTCATACGCTAAGTGCTACTTCTTGGAAGCCATTAGAGAGT 310
Query 301 TTTAGTTACAACAAAGATGAAGTAAACCAGGTAGTATGCAATGGAAAATCATCTTTTCTT 360
| | |||||||||||||||||| |||||||||||||| || |||| || |||||||||
Sbjct 311 TACAATTACAACAAAGATGAAGTTAACCAGGTAGTATGTAACGGAAGGTCGTCTTTTCTT 370
Query 361 GCTTCTGCAGATGATTCTGGTGATGTTAAGATCATCGACATTGGTCAGAGATGCCTTTAT 420
||||||||||||||||| || |||||||||||||||||| ||||||||| ||||||||||
Sbjct 371 GCTTCTGCAGATGATTCCGGCGATGTTAAGATCATCGACCTTGGTCAGAAATGCCTTTAT 430
Query 421 AAAACCCTTAGAGCTGGTCACACAAGTATATGTAGTTCTGTGCAATTCATTCCATGGAGA 480
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 431 AAAACCCTTAGAGCTGGTCACACAAGTATATGTAGTTCTGTACAATTCATTCCATGGAGA 490
Query 481 CCTTGGGAAGTTATAACTGGTGGACTTGATTCAAAGCTTGTTTTATGGGATTTCTCAAAA 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 491 CCTTGGGAAGTTATAACTGGTGGACTTGATTCAAAGCTTGTTTTATGGGATTTCTCAAAA 550
Query 541 GGTCGCTTGCAAAAGATTATAGACTTTGGGTCTGATACACA-AAGCAACTCAGGACAATG 599
||||||| ||||||||||||||||||||| ||||||||| | || ||||| ||||||||
Sbjct 551 GGTCGCTCGCAAAAGATTATAGACTTTGGATCTGATACAAATAAT-AACTCGGGACAATG 609
Query 600 CCTAAACCCTGCGTTTGTTCACTCGATAGCAATCCCGGAAATGGACATGGTTGATAAGTT 659
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 610 CCTAAACCCTGCGTTTGTTCACTCAATAGCAATACCGGAAATGGACATGGTTGATAAGTT 669
Query 660 AGGCAAGATATGCGTGGTTGCTAGAGGTGATGGAATTGTCGATTTGATCAATATCGAATC 719
|| ||||||||| | ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 670 AGACAAGATATGTGCGGTTGCTAGAGGTGATGGAATTGTCAATTTGATCAATATCGAATC 729
Query 720 AGAACTTTCCCGAAAAGGAACATCATCAAAAGGAAGTAGCAGCAGCA--A-CAA---TGT 773
||||||||||||||||||||||||||||||||||||||||||||||| | ||| |||
Sbjct 730 AGAACTTTCCCGAAAAGGAACATCATCAAAAGGAAGTAGCAGCAGCAGCAGCAACAATGT 789
Query 774 GATCAAAAGGGTTTGTTTAGACTACTCCGTTGGTGGACACAATGCTGCTGTTTCTTGTGT 833
| ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct 790 GGTCAAAAGGGTTTGTTTAGACTACTCTGTTGGTGGACACAATTCTGCTGTTTCTTGTGT 849
Query 834 AGCGTTTTCTCTGTTTAAGGAGAAAGGTAGATTCTTGATCTCAGGTGGTAATGATAAGAC 893
||| |||||||||||| ||||||||||||||||||| ||||| |||||||||||||| ||
Sbjct 850 AGCCTTTTCTCTGTTTCAGGAGAAAGGTAGATTCTTAATCTCTGGTGGTAATGATAAAAC 909
Query 894 TGTTAAAATCTGGGATTGCTTTAAATGTCTTGATCCAAACAACAACAACAATAACAGAGA 953
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 910 AGTCAAAATCTGGGATTGCTTTAAATGTCTTGATCCAAACAACAACAACAATAACAGTGA 969
Query 954 TTTCCTCCATTTGAATATTAACTTAAGCAAGAAGGTGAATTGGCTTTGCACGAATCAATC 1013
| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 970 TCTCCTCCATTTGAATATTAACCTAAGCAAGAAGGTGAATTGGCTTTGCACGAATCAATC 1029
Query 1014 TGATTCTGAGAATCTTGTTGTCTGTGACACAACAAGAGTAGTTAAGGTTTACTCAATCTC 1073
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 1030 TGATTCTGAGAATCTTGTAGTGTGTGACACAACAAGAGTAGTTAAGGTTTACTCAATCTC 1089
Query 1074 TTAAATAGGCC-GTATGGGACCATAAAA 1100
||||||||||| | ||||| ||||||||
Sbjct 1090 TTAAATAGGCCTG-ATGGGTCCATAAAA 1116
Score = 128 bits (69), Expect = 1e-28
Identities = 89/98 (91%), Gaps = 4/98 (4%)
Strand=Plus/Plus
Query 1099 AATGGTTGCTTGATCTACAAGTTAGTTTA-TTTGTT-CTTGACAACCAAATTATAAAGAA 1156
||||||||||||||||||||||||||||| ||| || |||| |||||||||||||||||
Sbjct 1188 AATGGTTGCTTGATCTACAAGTTAGTTTATTTTTTTGTTTGATAACCAAATTATAAAGAA 1247
Query 1157 TGATTTTATATTTAATTTTTGAATTGTTAAATTCTTTT 1194
||||| | |||||||| ||||||||||||||||||||
Sbjct 1248 TGATT--ACATTTAATTATTGAATTGTTAAATTCTTTT 1283
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58634236560
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5