BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494409
Length=1032
Score E
Sequences producing significant alignments: (Bits) Value
AT5G45750.1 | Symbols: AtRABA1c, RABA1c | RAB GTPase homolog A1... 1496 0.0
> AT5G45750.1 | Symbols: AtRABA1c, RABA1c | RAB GTPase homolog
A1C | chr5:18559116-18560842 FORWARD LENGTH=1056
Length=1056
Score = 1496 bits (810), Expect = 0.0
Identities = 925/980 (94%), Gaps = 10/980 (1%)
Strand=Plus/Plus
Query 58 CAAGTTTCAAATCTCATTAGGGTTTTTCATTTTGAGaaaaaaaaGGAACCATTTTTA--T 115
|||||||||||||||||| |||||||||||||| | |||| ||||| ||||||||| |
Sbjct 82 CAAGTTTCAAATCTCATTTGGGTTTTTCATTTT--G-AAAAGAAGGACCCATTTTTATCT 138
Query 116 CTCTC--TGTTTTGTTTTCTCGAATCTGAAGGAGTAAAGTTAAAAGCTTTGAAGGTGAGA 173
||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 139 CTCTCTTTGTTTTGTTTTCTCGAATCTGAAGGAGTAAAGTTAAAAGCTTTGAAGGAGAGA 198
Query 174 ATCAATGGCGGGTTACAGAGCAGATGATGAATACGATTACCTATTCAAGGTTGTTCTGAT 233
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 199 ATCAATGGCGGGTTACAGAGCAGATGATGAATACGATTACCTATTCAAGGTTGTTCTGAT 258
Query 234 AGGTGATTCAGGTGTGGGCAAATCCAATTTGCTTTCACGATTCACCAAGAATGAGTTTAG 293
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 259 AGGTGATTCAGGTGTGGGCAAATCCAATTTGCTTTCACGATTCACGAAGAACGAGTTTAG 318
Query 294 CCTCGAGTCTAAATCCACGATCGGCGTTGAGTTCGCGACTCGGAGTTTGAATGTTGATGA 353
|||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 319 TCTCGAGTCAAAATCCACGATCGGGGTCGAGTTCGCGACTCGGAGTTTGAATGTTGATGA 378
Query 354 GAAAGTCATCAAAGCCCAGATTTGGGATACTGCTGGTCAAGAAAGGTATCGAGCCATCAC 413
|||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 379 TAAAGTCATCAAAGCTCAGATTTGGGATACTGCTGGTCAAGAAAGGTACCGAGCCATCAC 438
Query 414 TAGCGCGTACTATCGAGGAGCTGTTGGAGCACTTCTTGTCTACGATGTGACCCGACACTC 473
||| ||||| || ||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 439 TAGTGCGTATTACCGAGGAGCTGTTGGAGCGCTTCTTGTCTACGATGTAACCCGACACTC 498
Query 474 AACATTTGAAAACGTTGAGACATGGCTGAAAGAGCTCAGAAACCACACTGATCCAAACAT 533
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 499 AACATTTGAAAACGTTGAGACTTGGCTGAAAGAACTCAGAAACCACACTGATCCAAACAT 558
Query 534 TGTAGTCATGCTCGTGGGAAACAAATCTGATCTCCGTCATCTCGTGGCTGTGCAGACAGA 593
|||||||||||||||||| ||||||||||| || || |||||||||||||| ||||| ||
Sbjct 559 TGTAGTCATGCTCGTGGGCAACAAATCTGACCTTCGCCATCTCGTGGCTGTTCAGACTGA 618
Query 594 AGATGCGAAATCATTCGCCGAGAAAGAATCTCTCTACTTCATGGAAACCTCAGCTCTCGA 653
|||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 619 AGATGCTAAGTCATTCGCCGAGAAAGAATCTCTCTACTTCATGGAAACCTCGGCTCTCGA 678
Query 654 AGCCACCAATGTTGAGAACGCATTCGCAGAAGTCCTCACTCAGATTCACCACATTGTGAG 713
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 679 AGCCACCAATGTTGAGAACGCTTTCGCCGAAGTCCTCACTCAGATTCACCACATTGTGAG 738
Query 714 CAAGAAGGCGATGGAAGCTGCTAGCGAATCCGCTAATGTTCCATCGAAAGGAGACAAGAT 773
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 739 CAAGAAGGCGATGGAAGCTGCGAGCGAATCCGCTAATGTTCCATCGAAAGGAGACAAGAT 798
Query 774 TGATATCGGTAAAGATGTTTCCGCTGTGAAGAAAGGTGGATGCTGCTCGAACTAATAAGA 833
|||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct 799 CGATATCGGTAAAGATGTTTCAGCTGTGAAGAAAGGTGGATGCTGCTCGAACTAATCAGA 858
Query 834 GAGTAGAATTATTGTTAACGACCTGAGGATCGGTTTTTGTTAACGGTTCCTATCGAATAT 893
||||||||||||||||||| |||| |||||||||||||||||||||||| ||||||||||
Sbjct 859 GAGTAGAATTATTGTTAACAACCTAAGGATCGGTTTTTGTTAACGGTTC-TATCGAATAT 917
Query 894 GAAGATTGCTTTTAGATTGAGTAATGCCCATTTGGTGTATTTCTGTTACTTATATAAATT 953
||||||||||||||| |||||||||||||||||||||||||||||||| |||| | | |
Sbjct 918 GAAGATTGCTTTTAGGTTGAGTAATGCCCATTTGGTGTATTTCTGTTATTTATCTGA-TC 976
Query 954 TATCAATGTTATTGTTTGAAAATGCTTTGTCAAATTTTCAGAACCCTAAATTATATC-AT 1012
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 977 TATCAATGTTATTGTTTGAAAATGCTATGTCAAATTTTCAGAACCCTAAATTATATTTAT 1036
Query 1013 CTCAAACAATAGGATTGTTG 1032
|||||||||||| |||||||
Sbjct 1037 CTCAAACAATAGAATTGTTG 1056
Score = 67.6 bits (36), Expect = 2e-10
Identities = 53/60 (88%), Gaps = 5/60 (8%)
Strand=Plus/Plus
Query 1 GTTTGATATTTTCCAATTCCGCGTCTTTCTTTCTCTGTTGAAATCGAAAAGATCTTGCAA 60
|||||||||||||||||||||||||||||| || |||||||||||||| || || |||
Sbjct 1 GTTTGATATTTTCCAATTCCGCGTCTTTCT--CT--GTTGAAATCGAAAAAATTTT-CAA 55
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50585786029
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5