BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494414
Length=1379
Score E
Sequences producing significant alignments: (Bits) Value
AT5G45710.1 | Symbols: AT-HSFA4C, RHA1, HSFA4C | winged-helix D... 1871 0.0
> AT5G45710.1 | Symbols: AT-HSFA4C, RHA1, HSFA4C | winged-helix
DNA-binding transcription factor family protein | chr5:18540850-18542863
FORWARD LENGTH=1515
Length=1515
Score = 1871 bits (1013), Expect = 0.0
Identities = 1311/1441 (91%), Gaps = 76/1441 (5%)
Strand=Plus/Plus
Query 1 GTTGTTGTTGCCATTCATACGCGCTTCCATCAACCCTTTGGTCTTGGAAGCCAAATCAAA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 7 GTTGTTGTTGCCATTCATACGCGCTTCCATCAACCCTTTGGTCTTGGAAGCCAAATCAAA 66
Query 61 CC--T--TTCAAT-C-C------TC--AAA--------TTTGCTTTACGTTCTCTCAATT 98
|| | |||||| | | || ||| ||||||||||||||||||||||
Sbjct 67 CCTTTCCTTCAATCCTCAAATTTTCGAAAATTTTCTCTTTTGCTTTACGTTCTCTCAATT 126
Query 99 CATATTTTTAAGAAAGTCTGTTCCTTTAATCAATCAAAT--------C-----AA-ATTG 144
| ||||| ||||||||| ||||||||||||||||||||| | || ||||
Sbjct 127 CTTATTTGTAAGAAAGTTTGTTCCTTTAATCAATCAAATCAAAGAGACTTTTGAAGATTG 186
Query 145 TTTCCCAATTTGCGTCAATCGGGATCGAGTCAAATCT----TC-T-TCCACTCATCATCT 198
||||||||||||||||||||||||||||||||||||| || | ||||||||||||||
Sbjct 187 TTTCCCAATTTGCGTCAATCGGGATCGAGTCAAATCTGAAATCTTCTCCACTCATCATCT 246
Query 199 GGACAAT-AGA-TTGAATCAAGGGAATTTTTGTTC--G---GG---T-----TCTTGGAT 243
||| || ||| || |||||||||| ||||||||| | || | ||||||||
Sbjct 247 -GACTATAAGACTT-AATCAAGGGACTTTTTGTTCGGGTTTGGTTTTAAACGTCTTGGAT 304
Query 244 TTGAAGTGGTTAAGGGATGGATGAAAATAATGGAGGTTCAAGCTCACTTCCACCTTTCCT 303
| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 305 TCGAAGTGGTTAAGGTATGGATGAAAATAATGGAGGTTCAAGCTCACTTCCACCTTTCCT 364
Query 304 TACTAAAACATATGAAATGGTAGATGATTCGTCTTCTGATTCGATTGTTTCTTGGAGCGA 363
||||||||||||||||||||| |||||||| |||||||| ||| | ||| ||||||||||
Sbjct 365 TACTAAAACATATGAAATGGTTGATGATTCTTCTTCTGACTCGGTCGTTGCTTGGAGCGA 424
Query 364 AAACAACAAAAGTTTTATCGTCAAGAACCCAGCGGAGTTTTCAAGAGACCTTCTTCCGAA 423
|||||||||||| || ||||||||||| ||||| |||||||||||||||||||||||| |
Sbjct 425 AAACAACAAAAGCTTCATCGTCAAGAATCCAGCAGAGTTTTCAAGAGACCTTCTTCCG-A 483
Query 424 G-TTCTTCAAGCATAAGAATTTCTCAAGTTTCATCCGTCAGCTTAATACATATGGTTTTC 482
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 484 GATTCTTCAAGCATAAGAATTTCTCAAGTTTCATCCGTCAGCTTAATACATATGGTTTTC 543
Query 483 GAAAAGTTGATCCTGAGAAATGGGAATTCTTGAATGATGATTTTGTTAGAGGTCGACCTT 542
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 544 GAAAAGTAGATCCTGAGAAATGGGAATTCTTGAATGATGATTTTGTTAGAGGTCGACCTT 603
Query 543 ACCTGATGAAGAACATTCATAGACGAAAACCGGTTCATAGCCACTCGTTACAGAATCTAC 602
|||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 604 ACCTTATGAAGAACATTCATAGACGAAAACCGGTTCATAGCCACTCGTTAGTGAATCTAC 663
Query 603 AAGCGCAAAATCCTTTGACGGAATCAGAAAGACGGAGCATGGAGGATCAGATCGAAAGAC 662
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 664 AAGCGCAAAATCCTTTGACGGAATCAGAAAGACGGAGCATGGAGGATCAGATAGAAAGAC 723
Query 663 TGAAAAGGGAGAAAGAAGGCCTTCTTGCGGAGTTACAGAACCAAGAGCAAGAACGGAAAG 722
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 724 TGAAAAATGAGAAAGAAGGCCTTCTTGCGGAGTTACAGAACCAAGAGCAAGAACGGAAAG 783
Query 723 A-TTTCGAGCTGCAAGTAACGACATTGAAAGATCGGTTACAACATATGGAGCAACATCAG 781
| ||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 784 AGTTT-GAGCTGCAAGTAACGACATTGAAAGATCGGTTACAACATATGGAACAACATCAG 842
Query 782 AAATCAATAGTGGCATATGTTTCACAGGTTTTGGAAAAACCAGGACTTTCTCTAAACCTC 841
|||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct 843 AAATCAATAGTGGCATATGTTTCACAGGTTTTGGGAAAACCAGGACTTTCACTAAACCTC 902
Query 842 GAAAACCATGAGAGAAGAAAAAGAAGATTTCAAGAGAATTCTCTTCCTCCAAGCAGTTCA 901
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 903 GAAAACCATGAGAGAAGAAAAAGAAGATTTCAAGAGAACTCTCTTCCTCCAAGCAGTTCA 962
Query 902 CACATAGAACAGGTCGAAAAGTTAGAATCTTCTCTAACTTTTTGGGAGAATCTTGTATCG 961
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 963 CACATAGAACAGGTCGAAAAGTTAGAATCTTCGCTAACGTTTTGGGAGAATCTTGTATCG 1022
Query 962 GAATCATGCGAAAAGAGCGGTCTGCAGTCACCAAGCATGGATCTTGATGCAGCTGAGTCA 1021
||||||||||| ||||||||| |||||||| |||||||||||| ||||||||||||||||
Sbjct 1023 GAATCATGCGAGAAGAGCGGTTTGCAGTCATCAAGCATGGATCATGATGCAGCTGAGTCA 1082
Query 1022 AGTCTAAGTATTGGCGATACCCGACCCAAATCATCAAAGATAGATATGAACTCAGAGCCA 1081
|||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||||
Sbjct 1083 AGTCTAAGTATTGGCGATACACGACCCAAATCATCGAAGATTGATATGAACTCAGAGCCG 1142
Query 1082 CCCGTTACCGTTACCGCACCTGCTCCAAAAACAGGGGTTAACGACGACTTTTGGGAACAA 1141
|||||||||||||| || ||||||||||||||||| |||||||| |||||||||||||||
Sbjct 1143 CCCGTTACCGTTACTGCGCCTGCTCCAAAAACAGGCGTTAACGATGACTTTTGGGAACAA 1202
Query 1142 TGTTTGACAGAAAACCCGGGATCAACAGAGCAACAAGAAGTTCAGTCAGAGAGAAGAGAT 1201
||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 1203 TGTTTGACAGAGAACCCTGGATCAACCGAGCAACAAGAAGTTCAGTCAGAGAGAAGAGAT 1262
Query 1202 GTCGATAACGATAAG---GGAAATACGATTGGAAATCAAAGGACGTTTTGGTGGAATTCA 1258
|||| ||| ||||| || |||| |||||||||||||||||||| |||||||||||||
Sbjct 1263 GTCGGTAATGATAATAATGGTAATAAGATTGGAAATCAAAGGACGTATTGGTGGAATTCA 1322
Query 1259 GGGAATGTAAATAACAACATTACAGAGAAAGCTTCTTGATATGAATGAGGTTTTTGTAAA 1318
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 1323 GGGAATGTAAATAACA---TTACAGAGAAAGCTTCTTGACATGAATGAGGTTTTTGTAAA 1379
Query 1319 ATAGATTTTTCTTTTGTTACTTCCTCTGAGATTATTGTATTCGTGTTCATTATTTATTAC 1378
|||| |||| |||||| | | || ||||||||||||||| ||||||||||||||||||
Sbjct 1380 ATAG-TTTT-CTTTTGGT--T-CCACTGAGATTATTGTAT--GTGTTCATTATTTATTAC 1432
Query 1379 T 1379
|
Sbjct 1433 T 1433
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67921337385
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5