BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg494414 Length=1379 Score E Sequences producing significant alignments: (Bits) Value AT5G45710.1 | Symbols: AT-HSFA4C, RHA1, HSFA4C | winged-helix D... 1871 0.0 > AT5G45710.1 | Symbols: AT-HSFA4C, RHA1, HSFA4C | winged-helix DNA-binding transcription factor family protein | chr5:18540850-18542863 FORWARD LENGTH=1515 Length=1515 Score = 1871 bits (1013), Expect = 0.0 Identities = 1311/1441 (91%), Gaps = 76/1441 (5%) Strand=Plus/Plus Query 1 GTTGTTGTTGCCATTCATACGCGCTTCCATCAACCCTTTGGTCTTGGAAGCCAAATCAAA 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 7 GTTGTTGTTGCCATTCATACGCGCTTCCATCAACCCTTTGGTCTTGGAAGCCAAATCAAA 66 Query 61 CC--T--TTCAAT-C-C------TC--AAA--------TTTGCTTTACGTTCTCTCAATT 98 || | |||||| | | || ||| |||||||||||||||||||||| Sbjct 67 CCTTTCCTTCAATCCTCAAATTTTCGAAAATTTTCTCTTTTGCTTTACGTTCTCTCAATT 126 Query 99 CATATTTTTAAGAAAGTCTGTTCCTTTAATCAATCAAAT--------C-----AA-ATTG 144 | ||||| ||||||||| ||||||||||||||||||||| | || |||| Sbjct 127 CTTATTTGTAAGAAAGTTTGTTCCTTTAATCAATCAAATCAAAGAGACTTTTGAAGATTG 186 Query 145 TTTCCCAATTTGCGTCAATCGGGATCGAGTCAAATCT----TC-T-TCCACTCATCATCT 198 ||||||||||||||||||||||||||||||||||||| || | |||||||||||||| Sbjct 187 TTTCCCAATTTGCGTCAATCGGGATCGAGTCAAATCTGAAATCTTCTCCACTCATCATCT 246 Query 199 GGACAAT-AGA-TTGAATCAAGGGAATTTTTGTTC--G---GG---T-----TCTTGGAT 243 ||| || ||| || |||||||||| ||||||||| | || | |||||||| Sbjct 247 -GACTATAAGACTT-AATCAAGGGACTTTTTGTTCGGGTTTGGTTTTAAACGTCTTGGAT 304 Query 244 TTGAAGTGGTTAAGGGATGGATGAAAATAATGGAGGTTCAAGCTCACTTCCACCTTTCCT 303 | ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 305 TCGAAGTGGTTAAGGTATGGATGAAAATAATGGAGGTTCAAGCTCACTTCCACCTTTCCT 364 Query 304 TACTAAAACATATGAAATGGTAGATGATTCGTCTTCTGATTCGATTGTTTCTTGGAGCGA 363 ||||||||||||||||||||| |||||||| |||||||| ||| | ||| |||||||||| Sbjct 365 TACTAAAACATATGAAATGGTTGATGATTCTTCTTCTGACTCGGTCGTTGCTTGGAGCGA 424 Query 364 AAACAACAAAAGTTTTATCGTCAAGAACCCAGCGGAGTTTTCAAGAGACCTTCTTCCGAA 423 |||||||||||| || ||||||||||| ||||| |||||||||||||||||||||||| | Sbjct 425 AAACAACAAAAGCTTCATCGTCAAGAATCCAGCAGAGTTTTCAAGAGACCTTCTTCCG-A 483 Query 424 G-TTCTTCAAGCATAAGAATTTCTCAAGTTTCATCCGTCAGCTTAATACATATGGTTTTC 482 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 484 GATTCTTCAAGCATAAGAATTTCTCAAGTTTCATCCGTCAGCTTAATACATATGGTTTTC 543 Query 483 GAAAAGTTGATCCTGAGAAATGGGAATTCTTGAATGATGATTTTGTTAGAGGTCGACCTT 542 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 544 GAAAAGTAGATCCTGAGAAATGGGAATTCTTGAATGATGATTTTGTTAGAGGTCGACCTT 603 Query 543 ACCTGATGAAGAACATTCATAGACGAAAACCGGTTCATAGCCACTCGTTACAGAATCTAC 602 |||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 604 ACCTTATGAAGAACATTCATAGACGAAAACCGGTTCATAGCCACTCGTTAGTGAATCTAC 663 Query 603 AAGCGCAAAATCCTTTGACGGAATCAGAAAGACGGAGCATGGAGGATCAGATCGAAAGAC 662 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 664 AAGCGCAAAATCCTTTGACGGAATCAGAAAGACGGAGCATGGAGGATCAGATAGAAAGAC 723 Query 663 TGAAAAGGGAGAAAGAAGGCCTTCTTGCGGAGTTACAGAACCAAGAGCAAGAACGGAAAG 722 |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 724 TGAAAAATGAGAAAGAAGGCCTTCTTGCGGAGTTACAGAACCAAGAGCAAGAACGGAAAG 783 Query 723 A-TTTCGAGCTGCAAGTAACGACATTGAAAGATCGGTTACAACATATGGAGCAACATCAG 781 | ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 784 AGTTT-GAGCTGCAAGTAACGACATTGAAAGATCGGTTACAACATATGGAACAACATCAG 842 Query 782 AAATCAATAGTGGCATATGTTTCACAGGTTTTGGAAAAACCAGGACTTTCTCTAAACCTC 841 |||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| Sbjct 843 AAATCAATAGTGGCATATGTTTCACAGGTTTTGGGAAAACCAGGACTTTCACTAAACCTC 902 Query 842 GAAAACCATGAGAGAAGAAAAAGAAGATTTCAAGAGAATTCTCTTCCTCCAAGCAGTTCA 901 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 903 GAAAACCATGAGAGAAGAAAAAGAAGATTTCAAGAGAACTCTCTTCCTCCAAGCAGTTCA 962 Query 902 CACATAGAACAGGTCGAAAAGTTAGAATCTTCTCTAACTTTTTGGGAGAATCTTGTATCG 961 |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| Sbjct 963 CACATAGAACAGGTCGAAAAGTTAGAATCTTCGCTAACGTTTTGGGAGAATCTTGTATCG 1022 Query 962 GAATCATGCGAAAAGAGCGGTCTGCAGTCACCAAGCATGGATCTTGATGCAGCTGAGTCA 1021 ||||||||||| ||||||||| |||||||| |||||||||||| |||||||||||||||| Sbjct 1023 GAATCATGCGAGAAGAGCGGTTTGCAGTCATCAAGCATGGATCATGATGCAGCTGAGTCA 1082 Query 1022 AGTCTAAGTATTGGCGATACCCGACCCAAATCATCAAAGATAGATATGAACTCAGAGCCA 1081 |||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||| Sbjct 1083 AGTCTAAGTATTGGCGATACACGACCCAAATCATCGAAGATTGATATGAACTCAGAGCCG 1142 Query 1082 CCCGTTACCGTTACCGCACCTGCTCCAAAAACAGGGGTTAACGACGACTTTTGGGAACAA 1141 |||||||||||||| || ||||||||||||||||| |||||||| ||||||||||||||| Sbjct 1143 CCCGTTACCGTTACTGCGCCTGCTCCAAAAACAGGCGTTAACGATGACTTTTGGGAACAA 1202 Query 1142 TGTTTGACAGAAAACCCGGGATCAACAGAGCAACAAGAAGTTCAGTCAGAGAGAAGAGAT 1201 ||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||| Sbjct 1203 TGTTTGACAGAGAACCCTGGATCAACCGAGCAACAAGAAGTTCAGTCAGAGAGAAGAGAT 1262 Query 1202 GTCGATAACGATAAG---GGAAATACGATTGGAAATCAAAGGACGTTTTGGTGGAATTCA 1258 |||| ||| ||||| || |||| |||||||||||||||||||| ||||||||||||| Sbjct 1263 GTCGGTAATGATAATAATGGTAATAAGATTGGAAATCAAAGGACGTATTGGTGGAATTCA 1322 Query 1259 GGGAATGTAAATAACAACATTACAGAGAAAGCTTCTTGATATGAATGAGGTTTTTGTAAA 1318 |||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| Sbjct 1323 GGGAATGTAAATAACA---TTACAGAGAAAGCTTCTTGACATGAATGAGGTTTTTGTAAA 1379 Query 1319 ATAGATTTTTCTTTTGTTACTTCCTCTGAGATTATTGTATTCGTGTTCATTATTTATTAC 1378 |||| |||| |||||| | | || ||||||||||||||| |||||||||||||||||| Sbjct 1380 ATAG-TTTT-CTTTTGGT--T-CCACTGAGATTATTGTAT--GTGTTCATTATTTATTAC 1432 Query 1379 T 1379 | Sbjct 1433 T 1433 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 67921337385 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5