BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494418
Length=972
Score E
Sequences producing significant alignments: (Bits) Value
AT5G45660.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1487 0.0
> AT5G45660.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; Has 35333 Blast hits to
34131 proteins in 2444 species: Archae - 798; Bacteria - 22429;
Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0;
Other Eukaryotes - 9610 (source: NCBI BLink). | chr5:18525071-18527007
FORWARD LENGTH=994
Length=994
Score = 1487 bits (805), Expect = 0.0
Identities = 919/974 (94%), Gaps = 7/974 (1%)
Strand=Plus/Plus
Query 1 ACCGGAACCAATGGCCGGAATAAAAACTTCACCGGCGACGATTAAACTCTTCTCCGTTCT 60
||||||| |||||||||| || |||||||| |||||||||||||| |||||| |||||||
Sbjct 23 ACCGGAATCAATGGCCGGGATTAAAACTTCTCCGGCGACGATTAAGCTCTTCACCGTTCT 82
Query 61 ATTTCTCATCCTCACAATCACATCTCCATCACCCAAATTCGTAAATGCCTTCACTTTCCC 120
||| ||||| ||||||||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct 83 ATTCCTCATTCTCACAATCTCATCTCCATCACCCAAATTCGTAAACGCCTTCACTTTCCC 142
Query 121 ATTCTCCTTCACACAATACAAAACCCTAATCTCAATCTCACGATCTCTCCTCCTCCGCGT 180
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 143 ATTTTCCTTCACACAATACAAAACCCTAATCTCAATCTCACGATCACTCCTCCTCCGCGT 202
Query 181 CGCTAACCTACGCGCTTCACGTGGAGACGCACTGGGTTCGTCACGTGTACAAGCCATGGC 240
||| ||||||||||||||||||||||||||| |||||||||| ||||||| ||| |||||
Sbjct 203 CGCAAACCTACGCGCTTCACGTGGAGACGCATTGGGTTCGTCTCGTGTACGAGCAATGGC 262
Query 241 TGATGAAATCGATCGTGGGTTAGGGTTAGGGTTTATAAGCAGAGCTTGGTCTGTTGGATG 300
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 263 TGATGAAATCGATCGTGGATTAGGGTTAGGGTTTATAAGCAGAGCTTGGTCTGTTGGTTG 322
Query 301 GGATTATATGTGGAATTACGCTTGGAGAAAGGGAGGGATTGACTACGGTGAGGTGTATGG 360
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 323 GGATTATATGTGGAATTACGCTTGGAGAAAGGGAGGGATTGACTACGGTGAGATGTATGG 382
Query 361 TGCGATTGGTGATCTCAATGAGCTTATGGGTTTAGTGACTGAGTTTAATAGAGCTGAATC 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 383 TGCGATTGGTGATCTCAATGAGCTTATGGGTTTAGTGACTGAGTTTAATAGAGCTGAATC 442
Query 421 TAATGCTGATAAAGCTAGTTCTGTTGCTCGGAGTTATGGCAAAGCTCTTCGTGTTTCGAA 480
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct 443 TAATGCTGATAAAGCTAGCTCTGTTGCTCGGAGTTATGGCAAAGCTCTTCGTGTTTCG-A 501
Query 481 AC-AGTTGCTTCGTCGTCTTCTTAGAATCTTTGGTAAATCGGGTGCATTGAGGGAGTTTT 539
|| | |||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 502 ACAAATTGCTTCGTCGTCTTCTTAGAATCTTTGCTAAATCGGGTGCATTGAGGGAGTTTT 561
Query 540 GGGAGATGGTGCAAGCTGAAGTAGTCGATGGAGAGTTATTACAAGACTGTCTCGAAGTAG 599
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 562 GGGAGATGGTGCAAGCTGAAGTAGTCGATGGAGAGTTACTACAAGACTGTCTCGAAGTAG 621
Query 600 GCGGAAACGACGTTAAGAGTTTGCTTCAAATAGCAAAGGACATGGCTCTACAGttttttt 659
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 622 GCGGAAACGACGTTAAGAGTTTGCTTCAAATAGCAAAGGACATGGCTGTACAGTTTTTTT 681
Query 660 CTTCTCAAAGCCGTTCCTCCGATGAACTTTAGCTACAAAGCAGAGCGCTTTCATGTACGT 719
||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 682 CTTCTCAAAGCCGTTCCTCTGATGAACTTTAGCTACAAAGCAGAGCGCTTTCACCTACGT 741
Query 720 TCCTTCTTTCCGTTTTGTTCCACATCGGATGTGACCCTTTTGGCACGTTGTACTATCT-T 778
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 742 TCCTTCTTTCCGTTTTGTTCCACATCGGATGTGACCCTTTTGGCACGTTGTACTAT-TGT 800
Query 779 ATGCATTAGTCAAATCCTCTAGGAAAATCCGCCAGAACCATTTTGCTCGTTACATCTTTT 838
||||||||| ||| |||||||||||| ||| ||| |||||||||| || ||||| ||||
Sbjct 801 ATGCATTAGCCAACTCCTCTAGGAAA-TCCTCCATAACCATTTTGTTCATTACAACTTTC 859
Query 839 GCTAGATAAGTTTTAAGGGATATGTAGACTAGAAAACAATTTGTTTGTTCGTTTTATAAG 898
|||||||||||| ||||||| | ||||||||||||| |||||||||||||||| |||||
Sbjct 860 GCTAGATAAGTTC-AAGGGATGTATAGACTAGAAAACGATTTGTTTGTTCGTTT-ATAAG 917
Query 899 TTTAAGAGATTCATAGACTAGAAACTCGAGGTTCTTTTGTAATTTCATTAACCTAAGCCC 958
| ||||| |||| ||||||||||||||||||||||||||||||||||| || |||||| |
Sbjct 918 TCTAAGACATTCGTAGACTAGAAACTCGAGGTTCTTTTGTAATTTCATCAATCTAAGCAC 977
Query 959 GCTTTTTGTAATCG 972
| |||||||||||
Sbjct 978 ACATTTTGTAATCG 991
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47571737209
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5