BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg494421

Length=383
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G45630.1 | Symbols:  | Protein of unknown function, DUF584 |...   507    4e-143


> AT5G45630.1 | Symbols:  | Protein of unknown function, DUF584 
| chr5:18505809-18506323 REVERSE LENGTH=515
Length=515

 Score =  507 bits (274),  Expect = 4e-143
 Identities = 358/396 (90%), Gaps = 16/396 (4%)
 Strand=Plus/Plus

Query  1    TTGATATTACAATAATGTCGGAAGAATTTCAAGAATCAGATATTATATTTTCCGACCAAT  60
            ||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||
Sbjct  51   TTGATATTACAATAATGTCAGAAGAATTTCAAGAATCCGACATTATATTTTCCGACCAAT  110

Query  61   CC-AAA-AT---C--C-A---GA-AAACTAAACTCTTTAACACAAGAAACGACGAGAAGA  108
            || ||| ||   |  | |   || | |||||||||| |||| ||||||||||||||||||
Sbjct  111  CCAAAATATCAACTTCTAGCCGATATACTAAACTCTATAACTCAAGAAACGACGAGAAGA  170

Query  109  AGGGTACAAGACGGCAGGTGACGGCGGAGAAAACATCTCCGGTGAGAATTCCGACGAATA  168
            |||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct  171  AGGGTACAAGACGGCATGAGACGGCGGAGAAAACATCTCCGGTGAGAATTCCGACGAATA  230

Query  169  ATTTCCGATATTTTAAATGGGACACGGCGGAGGAGGAGGAAGAAGATAAGACTCCTCCAC  228
            ||||||||| |||  ||||||||||| ||||||||||||| ||   ||||||||||||||
Sbjct  231  ATTTCCGATGTTTGGAATGGGACACGACGGAGGAGGAGGATGA---TAAGACTCCTCCAC  287

Query  229  ATGTAATTATCGAAAGAAGAATGAAAGAGCAAATAGCGTTTTCCGTTTGTACTTTAAAAG  288
            ||||||| |||||| || |||||||||||||||| |||||||||| ||||||||||||||
Sbjct  288  ATGTAATAATCGAACGACGAATGAAAGAGCAAATTGCGTTTTCCGCTTGTACTTTAAAAG  347

Query  289  GAAGAGACTTGAGCCGTCACCGGAACTCCGTTCTTAAGATGACCGGTTTTTTAGAAGCTT  348
            |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct  348  GAAGAGACTTGAGCCGTCACCGGAACTCCGTTCTTAGGATGACCGGTTTTTTAGAAGCTT  407

Query  349  GATT-ACTTAACCGGCCGGTTCAATTTGTTTTATTT  383
             ||| | |||||||||||||||| ||||||||||||
Sbjct  408  AATTTATTTAACCGGCCGGTTCAGTTTGTTTTATTT  443



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18046121891


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5