BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494422
Length=1381
Score E
Sequences producing significant alignments: (Bits) Value
AT5G45620.1 | Symbols: | Proteasome component (PCI) domain pro... 2015 0.0
AT4G19006.1 | Symbols: | Proteasome component (PCI) domain pro... 1367 0.0
> AT5G45620.1 | Symbols: | Proteasome component (PCI) domain protein
| chr5:18501486-18504117 FORWARD LENGTH=1514
Length=1514
Score = 2015 bits (1091), Expect = 0.0
Identities = 1206/1260 (96%), Gaps = 13/1260 (1%)
Strand=Plus/Plus
Query 19 AGATCGAGAGCTTTCGCAAAACTCGTTTCTTCCTTCGTCTTCGTCTCTGCTGCTTCCGCC 78
|||||||||| ||||| |||||||||||||| |||||||||| | || || ||||
Sbjct 54 AGATCGAGAGAATTCGC-AAACTCGTTTCTTCATTCGTCTTCG----T-CT--TT-CGCC 104
Query 79 ATGGCTGCTCTTCAATACTTGGAATCTCTGAAAAATGCCCATCCAGAGCTCGGTGAATGG 138
||||||||||| |||||||||||||||||||||||| | |||||||||||||| ||||||
Sbjct 105 ATGGCTGCTCTACAATACTTGGAATCTCTGAAAAATACGCATCCAGAGCTCGGCGAATGG 164
Query 139 TACAATTCCCTTGCAGATCTGTATCAGAAAAAGCTCTGGCATCAACTCACCCTTAAGCTC 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 165 TACAATTCCCTTGCAGATCTGTATCAGAAAAAGCTCTGGCATCAACTCACCCTTAAGCTC 224
Query 199 GAACAGTTCATCGCTCTCGCTGTCTTTCAGGCTGGAGATGCTCTAATTCAGTTCTATCAC 258
||||||||||||||||||||||||||||||||||| |||||| | |||||||||||||||
Sbjct 225 GAACAGTTCATCGCTCTCGCTGTCTTTCAGGCTGGTGATGCTTTGATTCAGTTCTATCAC 284
Query 259 AATTTCATCACTGACTTTGAGACGAAGATCAATCTTCTGAAGCTTGCACATTTTGCTGTG 318
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 285 AATTTCATCACTGACTTTGAGACGAAGATCAATCTTCTGAAGCTTGCGCATTTTGCTGTG 344
Query 319 GTGGTCTCTCGACAGTACTCTGAGAAAGAAGCTGCAGTTAGCTATCTTGAAAGCGTGATT 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 345 GTGGTCTCTCGACAGTACTCTGAGAAAGAAGCTGCAGTTAGCTATCTTGAAAGCGTGATT 404
Query 379 GAGAAACTTAGAGCTACTAAAGAGCCTCGGATTACTGAACCGATCATTTATATTGAAACA 438
||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct 405 GAGAAACTTAGAGCTACTAAAGAGCCTAGGATTACTGAACCAATCATTTATATTGAAACA 464
Query 439 CAAAAAGCTCTGTTCAAGCTTGAGCAAGGTGATCAGAAGGAGTGCAAGAAAATCTTGGAT 498
||||||||| | ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 465 CAAAAAGCTTTATTCAAGCTTGAGCAAGGTGATCAGAAGGAGTGCAAAAAAATCTTGGAC 524
Query 499 GATGGAAAGAGCTCTCTTGACAGTATGACTGACATTGATCCATCGGTCTATGCCAACTTC 558
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 525 GATGGAAAGAGCTCTCTTGATAGTATGACTGACATTGATCCATCAGTCTATGCCAACTTC 584
Query 559 TATTGGGTGTCTTCTCAGTACCATAAGTCCCGTCAAGAATTTTCTGATTTCTACAAAAGT 618
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 585 TATTGGGTGTCTTCTCAGTACCATAAGTGCCGTCAAGAATTTTCTGATTTCTACAAAAGT 644
Query 619 GCTCTACTTTATCTTGCATACACGTCTGTGGAGGACCTCTCAGAATCGTTTAAGCTGGAT 678
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 645 GCTCTGCTTTATCTTGCATACACGTCTGTGGAGGACCTTTCAGAATCGTTTAAGCTGGAT 704
Query 679 TTGGCTTTCGATTTGTCACTTTCAGCTCTACTTGGGGAGAACATCTATAACTTTGGGGAA 738
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 705 TTGGCTTTCGATTTGTCACTATCAGCTCTACTTGGGGAGAACATCTATAACTTTGGGGAA 764
Query 739 CTGTTAGCCCATCCCATTTTGAAAAGTCTCCTTGGAACAAATGTGGAATGGCTCTACCAC 798
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 765 CTGTTAGCCCATCCCATTTTGAAAAGTCTCCTTGGAACAAATGTGGAATGGCTCTACCAC 824
Query 799 ATTCTACAGGCATTCAATCATGGTGATTTAGTTCAATATCAAGAACTATGCCGTGTGCAC 858
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 825 ATTCTACAGGCATTCAACCATGGTGATTTAGTTCAGTATCAAGAACTATGCCGTGTGCAC 884
Query 859 AACGCATCCTTGATTGCGCAACCAGCACTGGTTGAGAACGAGAAGAAGCTTTTGGAAAAG 918
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 885 AACGCATCCTTGATTGCTCAACCAGCACTTGTTGAGAACGAGAAGAAGCTTTTGGAAAAG 944
Query 919 ATCAACATTCTCTGCCTTATCGAGATCATCTTCAGCCGACCTGCTGAAGATAGAACCATT 978
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 945 ATCAACATTCTCTGCCTTATCGAGATCATCTTCAGCCGACCCGCTGAAGATAGAACCATT 1004
Query 979 CCTTTGAGTATCATCGCTGAGCGTACTAAACTTTCTATTGAAGATGTTGAGCACCTTCTC 1038
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1005 CCTTTGAGCATCATCGCTGAGCGTACTAAACTTTCCATTGAAGATGTTGAGCACCTTCTC 1064
Query 1039 ATGAAGAGCCTTTCTGTGCATCTAATTGAGGGCATCATAGACCAAGTGAATGGAACAGTT 1098
||||||||||||||||||||| | || ||||||||||||||||||||||| |||||| ||
Sbjct 1065 ATGAAGAGCCTTTCTGTGCATTTGATCGAGGGCATCATAGACCAAGTGAACGGAACAATT 1124
Query 1099 TACGTCTCATGGGCACAACCGAGAGTACTAGGGATTCCACAGATCAAGGCTTTGAGGGAT 1158
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1125 TATGTCTCATGGGCGCAACCGAGAGTACTAGGGATTCCACAGATCAAGGCTTTGAGGGAT 1184
Query 1159 CAATTGGACAGTTGGGTTGACAAAGTTCACACCACTTTGCTATCTGTTGAAGCCGAGACA 1218
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1185 CAATTAGACAGTTGGGTTGACAAAGTTCACACCACTTTACTATCTGTTGAAGCCGAGACA 1244
Query 1219 CCAGATCTTGTTGCCGCTTAAGA-AAGAA-AAAACCTTTCTTCCTCCTTTTGAAGCTACT 1276
|||||||||||||| || ||||| || || |||||||| |||||||||||||||||||||
Sbjct 1245 CCAGATCTTGTTGCAGCATAAGAGAA-AAGAAAACCTT-CTTCCTCCTTTTGAAGCTACT 1302
> AT4G19006.1 | Symbols: | Proteasome component (PCI) domain protein
| chr4:10409183-10411465 REVERSE LENGTH=1445
Length=1445
Score = 1367 bits (740), Expect = 0.0
Identities = 1032/1173 (88%), Gaps = 20/1173 (2%)
Strand=Plus/Plus
Query 77 CCATGGCTGCTCTTCAATA-CTTGGAATCTCTGAAAAATGCCCATCCAGAGCTCGGTGAA 135
||||||||||||| ||||| ||| ||||| | ||||||||| || |||||||| |||||
Sbjct 117 CCATGGCTGCTCTACAATACCTT-GAATCGCAGAAAAATGCGCACCCAGAGCTTGGTGAG 175
Query 136 TGGTACAATTCCCTTGCAGATCTGTATCAGAAAAAGCTCTGGCATCAACTCACCCTTAAG 195
||||||||||| || ||||||||||| ||||| |||||||||||||| ||||| ||||||
Sbjct 176 TGGTACAATTCGCTCGCAGATCTGTACCAGAAGAAGCTCTGGCATCAGCTCACTCTTAAG 235
Query 196 CTCGAACAGTTCATCGCTCTCGCTGTCTTTCAGGCTGGAGATGCTCTAATTCAG-TTCTA 254
||||| ||||||||||||||| ||||||||||||||||||||||| |||| ||| || ||
Sbjct 236 CTCGAGCAGTTCATCGCTCTCTCTGTCTTTCAGGCTGGAGATGCTTTAATACAGCTT-TA 294
Query 255 TC-ACAATTTCATCACTGACTTTGAGACGAAGATCAATCTTCTGAAGCTTGCACATTTTG 313
| ||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |
Sbjct 295 -CAACAATTTCATCACTGACTTTGAGACGAGGATCAATCTTCTGAAGCTTGCGCATTTCG 353
Query 314 CTGTGGTGGTCTCTCGACAGTACT-CTGAGAAAGAAGCTGCAGTTAGCTATCTTGAAAGC 372
|||| || ||||| |||||||| | |||||||||||||||||||||| ||||||||| |
Sbjct 354 CTGTTGTAGTCTCCCGACAGTA-TCCTGAGAAAGAAGCTGCAGTTAGTTATCTTGAAGGA 412
Query 373 GTGATTGAGAAACTTAGAGCTACTAAAGAGCCTCGGATTACTGAACCGATCATTTATATT 432
||||||||||| |||| ||||||||||||| | |||| | |||||| || | |||||
Sbjct 413 GTGATTGAGAAGCTTAAAGCTACTAAAGAGTCAAGGATAAATGAACCAATTAGCTATATA 472
Query 433 GAAACACAAAAAGCTCTGTTCAAGCTTGAGCAAGGTGATCAGAAGGAGTGCAAGAAAATC 492
|||||||||| |||| |||||||||||||||||||||| |||||||||||||||||||||
Sbjct 473 GAAACACAAATAGCTTTGTTCAAGCTTGAGCAAGGTGACCAGAAGGAGTGCAAGAAAATC 532
Query 493 TTGGATGATGGAAAGAGCTCT-CTTGACAGTATGACTGACATTGATCCATCGGTCTATGC 551
||||| |||||||| ||| || ||||| ||||||||||||||||||||||| || |||||
Sbjct 533 TTGGACGATGGAAAAAGC-CTGCTTGATAGTATGACTGACATTGATCCATCAGTTTATGC 591
Query 552 CAACTTCTATTGGGTGTCTTCTCAGTACCAT-AAGTCCCGTCAAGAATTTTCTGATTTCT 610
|||||||| |||||| ||||||||||||||| |||| ||||||||| || ||||| ||||
Sbjct 592 CAACTTCTTTTGGGTCTCTTCTCAGTACCATAAAGT-CCGTCAAGAGTTCTCTGAGTTCT 650
Query 611 ACAAAAGTGCTCTACTTTATCTTGCATACACGTCTGTGGAGGAC-CTCTCAGAATCGTTT 669
| |||| |||||| ||||| || || || ||||||||||| | ||||| ||||| |||
Sbjct 651 ATAAAAATGCTCTTCTTTACCTCGCTTATACGTCTGTGGA-CTCACTCTCGGAATCATTT 709
Query 670 AAGCTGGATTTGGCTTTCGATTTGTCACTTTCAGCTCTACTTGGGGAGAACATCTATAAC 729
||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||||
Sbjct 710 AAGCTGGATTTGGCTTTTGATTTGTCGCTTTCAGCTCTACTTGGGGAGAATATCTATAAC 769
Query 730 TTTGGGGAACTGTTAGCCCATCCCATTTTGAAAAGTCTCCTTGGAACAAATGTGGAATGG 789
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 770 TTTGGGGAACTGTTAGCCCATCCAATTTTGAAAAGTCTGCTTGGAACAAATGTGGAATGG 829
Query 790 CTCTACCACATTCTACAGGCATTCAATCATGGTGATTTAGTTCAATATCAAGAACTATGC 849
|| |||||||||||||| |||||||| || || ||||||||||| || |||||||| ||
Sbjct 830 CTTTACCACATTCTACAAGCATTCAACCACGGAGATTTAGTTCAGTACCAAGAACTCTGT 889
Query 850 CGTGTGCACAACGCATCCTTGATTGCGCAACCAGCACTGGTTGAGAACGAGAAGAAGCTT 909
||||||||||| ||||| |||| ||| |||||||||||||||||||| |||||||| ||
Sbjct 890 CGTGTGCACAATGCATCGTTGAGTGCTCAACCAGCACTGGTTGAGAATGAGAAGAAACTA 949
Query 910 TTGGAAAAGATCAACATTCTCTGCCTTATCGAGATCATCTTCAGCCGACCTGCTGAAGAT 969
|| || ||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 950 TTAGAGAAGATCAACATTCTCTGCCTTATTGAGATCATTTTCAGCCGACCTGCTGAAGAT 1009
Query 970 AGAACCATTCCTTTGAGTATCATCGCTGAGCGTACTAAACTTTCTATTGAAGATGTTGAG 1029
|| ||||| ||||||||| |||| || ||||||||||||||||| || ||||||||||||
Sbjct 1010 AGGACCATACCTTTGAGTGTCATTGCCGAGCGTACTAAACTTTCAATCGAAGATGTTGAG 1069
Query 1030 CACCTTCTCATGAAGAGCCTT-TCTGTGCATCTA-ATTGAGGGCAT-CATAGACCAAGTG 1086
|||||||||||||||||| || || ||||| || || ||||| || | |||| || |||
Sbjct 1070 CACCTTCTCATGAAGAGC-TTATCGGTGCA-CTTGATAGAGGGAATAC-TAGATCAGGTG 1126
Query 1087 AATGGAACAGTTTACGTCTCATGGGCACAACCGAGAGTACTAGGGATTCCACAGATCAAG 1146
|||||||||||||||||||||||||| |||||||| || |||| || || |||||||||
Sbjct 1127 AATGGAACAGTTTACGTCTCATGGGCGCAACCGAGGGTGTTAGGAATACCGCAGATCAAG 1186
Query 1147 GCTTTGAGGGATCAATTGGACAGTTGGGTTGACAAAGTTCACACCACTTTGCTATCTGTT 1206
| ||||||||||| | ||||| ||||| || || ||||||||||| ||| ||||||||
Sbjct 1187 TCATTGAGGGATCAGCTAGACAGCTGGGTCGATAAGGTTCACACCACATTGTTATCTGTT 1246
Query 1207 GAAGCCGAGACACCAGATCTTGTTGCCGCTTAA 1239
|| ||||||||||| ||||||||||| ||||||
Sbjct 1247 GAGGCCGAGACACCTGATCTTGTTGCAGCTTAA 1279
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68021738475
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5