BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494424
Length=1988
Score E
Sequences producing significant alignments: (Bits) Value
AT5G45610.1 | Symbols: SUV2 | protein dimerizations | chr5:1849... 2362 0.0
> AT5G45610.1 | Symbols: SUV2 | protein dimerizations | chr5:18496311-18499673
REVERSE LENGTH=2027
Length=2027
Score = 2362 bits (1279), Expect = 0.0
Identities = 1486/1588 (94%), Gaps = 5/1588 (0%)
Strand=Plus/Plus
Query 405 GGAACAAGAATGTTCTCAGCTTAAAAAGGGGAAAAACAAAGAAATGGAGTCTAAAAACTT 464
||| |||||||||||||||||||| |||||||||| |||||||| ||||||| ||||||
Sbjct 441 GGAGCAAGAATGTTCTCAGCTTAAGAAGGGGAAAAGCAAAGAAACAGAGTCTAGAAACTT 500
Query 465 GTGTGC---TGATAATAAAGGGCAATGTTCTACAGTTCATGCTTCTAAGAGAACAGACTT 521
|||||| |||||||| ||||||||||||||| ||||||||||||||||| | ||||||
Sbjct 501 GTGTGCTGATGATAATAGAGGGCAATGTTCTACGGTTCATGCTTCTAAGAGGATAGACTT 560
Query 522 GGAACCAGATGTTGCAACTTCTTCAGTAATTCATCGAGAAAATGAATCTACGATGGGGTT 581
|||||||||||| |||||||||||||||| |||||||||||| || |||| ||||| |||
Sbjct 561 GGAACCAGATGTCGCAACTTCTTCAGTAAATCATCGAGAAAACGACTCTAGGATGGCGTT 620
Query 582 AGATGATaaaaaaaGCTTCAAGACCGCCGGTGTTCAGGCGGATCTGGCCAATAATGCTGA 641
||||||||||| ||||||||||||| | ||||||||||| ||| |||||||| || ||||
Sbjct 621 AGATGATAAAAGAAGCTTCAAGACCACTGGTGTTCAGGCTGATGTGGCCAATCATTCTGA 680
Query 642 CCTTTCAAAGAAACTTCTAGATATCTGGTGCACCTCAAATTATCAAGATCCGAGGAAAAA 701
||||||||||||||| ||||| |||||| |||||||||||||||||||||||||||||||
Sbjct 681 CCTTTCAAAGAAACTGCTAGACATCTGGCGCACCTCAAATTATCAAGATCCGAGGAAAAA 740
Query 702 TCTAATCTCAGAGTTGCTACTGGCTTTTTCAACAGATCTCCAGATTATCTTTAGTTTTAT 761
|||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct 741 TCTAATCTCAGAGTTGCTACTGGCTTGTTCAACAGATCTCCAGATTCTCTTTAGTTTTAT 800
Query 762 GAAAATCAGTACGCCTCCCCAAGAAATTGACAAACACGAAGCCAAAACCTCGTCAGATAT 821
|||||||||||||||||| |||||| || ||||||| ||||||||||||||||||||||
Sbjct 801 GAAAATCAGTACGCCTCCTCAAGAACTTAACAAACAGGAAGCCAAAACCTCGTCAGATAG 860
Query 822 ACAATCTTCTAAAGCCTTAGAATCTGAAAAAGTGTATCATTTATACTCTGCAGTAACCAA 881
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||
Sbjct 861 ACAATCTTCTAAAGCCTTAGAATCTGAGAAAGTGTATCAATTATACTCTGCAGTAACAAA 920
Query 882 GATCAGCTATGGGTTTGTAAATTTGAAGTCCTTGGTTGAACCACTACTTGATCTTTGTAA 941
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 921 GATCAGCTATGGGTTTGTAAATTTGAAGACCTTGGTTGAACCACTACTTGATCTTTGTAA 980
Query 942 AGCGGAAACTGCCGTTCTTGTTCATAGATCTCTGCGTGTACTACATGTCCTGTTGGAACA 1001
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 981 AGCGGAAACTGCCGTTCTTGTTCATAGATCTCTGCGTGTACTACATGTGCTGTTGGAACA 1040
Query 1002 TATATGTGGTGTTGAAAAGAGATTTGAAGCCAGTTGGGATGCAAACTGGCATTCTCTGTT 1061
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1041 TATATGTGGTGATGAAAAGAGATTTGAAGCCAGTTGGGATGCAAACTGGCATTCTCTGTT 1100
Query 1062 TGAATTGATGAATCAAATTGCTAGCAGAAGAACCGAAGAGGATGTGAAGCTGGAAGCATT 1121
| |||||||||||||||||||||| | |||||||||| |||||||||| | |||||||||
Sbjct 1101 TAAATTGATGAATCAAATTGCTAGTAAAAGAACCGAACAGGATGTGAAACAGGAAGCATT 1160
Query 1122 GTCGATAATGAACATAATCGTGATGAGCACTGATGCTTATACCGCGAGAGAAACTTTTGT 1181
|||||||||||||||||||||||||||||| ||||||||||| || ||||||| ||||||
Sbjct 1161 GTCGATAATGAACATAATCGTGATGAGCACCGATGCTTATACTGCTAGAGAAAGTTTTGT 1220
Query 1182 CTCCAAGGAAGTGTTTGAGAGCATTTCATTACTTTTAAGAAAAGAAGGTGGCTTACATGT 1241
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1221 CTCCAAGGAAGTGTTTGAAAGCATTTCATTACTTTTAAGAAAAGAAGGTGGCTTACATGT 1280
Query 1242 ACGGAAAGAAGCTATTCATCTTTATTACTTGCTACTCAACTGCCCTAAACTATACGATAG 1301
||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct 1281 ACGGAAAGAAGCTATTCATCTTTTTTACTTGCTACTCAACTGTCCTAAACTATACGATAC 1340
Query 1302 ATTTGATTCTCTCCATGAGGAAAAGAACTCTTCAGATACTGAAAACGATAGTGAAGTAAA 1361
|||||||||||||||||||||||||||||| || |||||||||||||||||||||| |||
Sbjct 1341 ATTTGATTCTCTCCATGAGGAAAAGAACTCCTCTGATACTGAAAACGATAGTGAAGGAAA 1400
Query 1362 TCTCTTTGCTACAGAAGCATTTGGTAAGATCTTTGAAGGCTTAGCAGATTGTTTGACTTC 1421
| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1401 TTTCTTTGCTTTGGAAGCATTTGGTAAGATCTTTGAAGGCTTAGCAGATTGTTTGACTTC 1460
Query 1422 TCCCAGAAAGACATCAGAGGATCTGGAATTATGTCGGAATGTAATAATGATCTTGGC-CT 1480
|||||||||||||||||||||||||||| | ||| |||||||||||||||||||||| ||
Sbjct 1461 TCCCAGAAAGACATCAGAGGATCTGGAACTGTGTAGGAATGTAATAATGATCTTGGCTCT 1520
Query 1481 TAGCAGCTTCTTCAGGAAACTCTGGCTATGAACTGCTCTCAAATCACAAACTACCTCAAG 1540
||||||||||||||||||||||||||||||||| ||||||| |||||| ||||||||||
Sbjct 1521 -AGCAGCTTCTTCAGGAAACTCTGGCTATGAACTACTCTCAAGTCACAAGCTACCTCAAG 1579
Query 1541 ATACCAACTTTTTAATGGTGATACTTCATCTTTTAGTTGCAGAAATAGACTCGGAATCAA 1600
| | || ||| |||||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct 1580 ACAGCAGCTTCTTAATGCTGATACTTCATCTTTTAGTTGCTGAAATAGACTCGGAATCAA 1639
Query 1601 CAGAGTTTCGTCCAAAAGCGGAAATCTTGAAAGCGAGGACATTATTGATGAGAGAGATAC 1660
|||| |||| |||||||||||||||||| ||||| || ||| |||||||||||||||||
Sbjct 1640 CAGAATTTCATCCAAAAGCGGAAATCTTCAAAGCAAGAACACTATTGATGAGAGAGATAT 1699
Query 1661 TGATATTACTAAACAGACTTGTCTCTGGCTTGTCAAGCTCTGCTACTATTCTAAAAGAAC 1720
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1700 TGATATTACTAAACAGACTTGTCTCTGGCTTGTCAAGCTCTGCTACTATTCTAAAGGAAC 1759
Query 1721 TAACAAAGAGCAGAGACATGGCGAGTCTAACAGTTGATGCAGCCACAAGATTATCCCGTA 1780
|||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1760 TAACAACGAGCAGAGACATGGCGAGTCTAACGGTTGATGCAGCCACAAGATTATCCCGTA 1819
Query 1781 AAAGAAACTTACTAGGACAACCTGAAAACAGTGTTCAGAGAATGAGGAATACAGAAATCA 1840
||||||||||||| ||| ||||||||| ||||||| |||||||||||||||| |||||||
Sbjct 1820 AAAGAAACTTACTTGGAAAACCTGAAAGCAGTGTTGAGAGAATGAGGAATACCGAAATCA 1879
Query 1841 TGGATTTAGCCCGCATTTTCAAGAGACGGGTTTTCGCCTTCTTAGGCGACAATACTATAT 1900
|||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 1880 TGGATTTAGCCCGCATTTTCAAGAAACGGGTTTTCGCCTTCTTAGGTGACAATACTATAT 1939
Query 1901 AAATACAAACATTATCGGGGTTGTTGAGTTCATTGAGTTCTCTTTTTTGAGCATAGAGAA 1960
|| ||| |||||||||| ||||||||||||||| ||||||||||||||||| || | ||
Sbjct 1940 GAACACATACATTATCGGTGTTGTTGAGTTCATTCAGTTCTCTTTTTTGAGCGTAAATAA 1999
Query 1961 CTGCTAATTTTGATTGAAGGAGCATAGT 1988
||||||||||||||||||||||||||||
Sbjct 2000 CTGCTAATTTTGATTGAAGGAGCATAGT 2027
Score = 361 bits (195), Expect = 2e-98
Identities = 292/334 (87%), Gaps = 26/334 (8%)
Strand=Plus/Plus
Query 79 CGCCCCCTACCTCCTCCGTCTCTTCCAACGTTTGTACCGGCTCCTCCGGTATCGGAGATg 138
||||||||||||||||||| ||||||||||||| ||||||||||||| | |
Sbjct 88 CGCCCCCTACCTCCTCCGTATCTTCCAACGTTTCTACCGGCTCCTCC-G---C------- 136
Query 139 acgacgacgacgacgaTGATTTCATCGAATGTATCTCACCCTATGCAATTACAATCCTCC 198
| | |||||| | |||||||||| | |||||||||||||||| |||||||||||
Sbjct 137 -C-A--TCGACGA--A-GATTTCATCGTCTTTATCTCACCCTATGCAGTTACAATCCTCA 189
Query 199 GCGGGACAAAAACGGAAACAAATTCAAGTTCGTGATCCTTTCATCAGCTATTCTCCGCCG 258
||||||||| ||||||||||||||||||||| |||||||||| | |||||||||||||||
Sbjct 190 GCGGGACAACAACGGAAACAAATTCAAGTTCCTGATCCTTTCTTAAGCTATTCTCCGCCG 249
Query 259 AGAGAACTCTCTCAAAGAGTAG---GCGGTTTCAATGACTCGTTAATGGATTACTCTAAC 315
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 250 AGAGAACTCTCTCAAAGAGTAGTAAGCGGTTTCAATGACGCGTTAATGGATTACTCTAAC 309
Query 316 TCTAC-G--GTTACTGCTGCTAAACCAATCTCTCCGAACT-CTTCGAATCGTTGCTGTGA 371
||||| | ||||||||||||||||| |||||||||| || ||||||||||| |||||||
Sbjct 310 TCTACTGTTGTTACTGCTGCTAAACCTATCTCTCCGA-CTACTTCGAATCGTCGCTGTGA 368
Query 372 TAGTGAGAAAGATCTCGAAATTGATCGATTAAAG 405
||||||||||||||||||||||||||| ||||||
Sbjct 369 TAGTGAGAAAGATCTCGAAATTGATCGCTTAAAG 402
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 98493469290
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5