BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494425
Length=1031
Score E
Sequences producing significant alignments: (Bits) Value
AT5G45600.1 | Symbols: GAS41, TAF14B | YEATS family protein | c... 1580 0.0
> AT5G45600.1 | Symbols: GAS41, TAF14B | YEATS family protein |
chr5:18487902-18489869 FORWARD LENGTH=1167
Length=1167
Score = 1580 bits (855), Expect = 0.0
Identities = 978/1035 (94%), Gaps = 17/1035 (2%)
Strand=Plus/Plus
Query 1 GAAGAAGAAGAAGATGACCTTAATTTTATCTGAGTGAAATCTT-AAATTACCCAGAGAGA 59
||||||||||||||||||||||||||| ||||| ||||||||| ||||| |||||| |||
Sbjct 96 GAAGAAGAAGAAGATGACCTTAATTTTTTCTGAATGAAATCTTAAAATT-CCCAGAAAGA 154
Query 60 AGAATGACGAACAGTTCGTCATCGAAGAAACAAGCTCAAGATCAGCCTGAAACTAGCGAA 119
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 155 AGAATGACGAACAGCTCGTCATCGAAGAAACAAGCTCAAGATCAGCCAGAAACTAGCGAA 214
Query 120 CCAACTCTCAAATCACTCAAAGCCAAAATGACTAAATCCGACGAAAAGCAGAAGAAGCTT 179
|| ||||||||||| |||||| |||| |||||||||||||||||||||||||||||||||
Sbjct 215 CCCACTCTCAAATCTCTCAAAACCAAGATGACTAAATCCGACGAAAAGCAGAAGAAGCTT 274
Query 180 AAAGACATTGAAATAAGCGTTCCAATTGTGTATGGTAATGTAGCATTCTGGCTTGGCAAG 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 275 AAAGACATTGAAATAAGCGTTCCAATTGTGTATGGTAATGTAGCATTCTGGCTTGGCAAG 334
Query 240 AAGGCTAGTGAGTATCAATCACACAAGTGGGCAGTATATGTTCGAGGGGCAACAAATGAA 299
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 335 AAGGCTAGTGAGTATCAATCTCACAAGTGGGCAGTATATGTTCGAGGGGCAACAAATGAA 394
Query 300 GATATCAGTGTTGTAGTAAAGAAAGTTGTATTTCAGCTTCATTCTAGTTTTAATAACCCG 359
|||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct 395 GATATCAGTGTTGTAGTAAAGAAAGTTGTATTTCAGCTTCATTCTAGTTTCAATAGCCCG 454
Query 360 ACGAGAGTTATCGAGGAGCCTCCATTTGAGGTATCGGAATCTGGTTGGGGAGAATTCGAG 419
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 455 ACTAGAGTTATCGAGGAGCCTCCATTCGAGGTATCGGAATCTGGTTGGGGAGAATTCGAG 514
Query 420 ATTGCGATGACATTGCATTTCCACAGCGATGTCTGCGATAAGCCATTGAGTTTATATCAT 479
||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 515 ATTGCAATGACATTGCATTTCCACAGTGATGTCTGTGATAAGCCATTGAGTTTATATCAT 574
Query 480 CATTTAAAGTTATACCCGGAAGATGAATCAGGTCCTTTGACAATGAAGAAGCCTGTGGTT 539
||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 575 CATTTAAAGCTATACCCTGAAGATGAATCAGGTCCTTTGACAATGAAGAAGCCTGTGGTT 634
Query 540 GTGGAATCTTACGACGAGATTGTGTTTCCTGATCCTTCAGAAAGTTTTCTATCTAGGGTT 599
||||||||||| ||||||||||| |||||||||||||||||||||||| || ||||||||
Sbjct 635 GTGGAATCTTATGACGAGATTGTCTTTCCTGATCCTTCAGAAAGTTTTTTAGCTAGGGTT 694
Query 600 CAGAATCATCCGGCTTTGACATTTCCAAGATTACCCTCTGGTTACAACTTGCCTGCTCCT 659
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 695 CAGAATCATCCGGCTTTGACCTTTCCAAGATTACCCTCTGGTTACAACTTGCCTGCTCCT 754
Query 660 ATGCAAGTGGAGGATACCGGCAAAAAGAAGAGAGGAGATACGAAAGATCATAGTTTGGGA 719
|||||||| || |||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 755 ATGCAAGTCGAAGATACCGGGAAAAAGAAGAGAGGTGATACGAAAGATCATAGTTTGGGA 814
Query 720 CAATGGTTCATGAGTTTCTCTGAAGCAGATGAGTTATTACAGCTCGCGGCTGCTCGTCAA 779
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 815 CAATGGTTCATGAGTTTCTCTGAAGCAGATGAGTTATTACAGCTTGCAGCTGCTCGTCAA 874
Query 780 CAGGTTCAAGCTCATATTGCGAAACTGAGGCGACAAATAAGTTTGCTAGAGGGACAGAAT 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 875 CAGGTTCAAGCTCATATTGCGAAACTGAGGCGACAAATAAGTTTGCTAGAGGGACAGAAT 934
Query 840 CAGACCGTGAAAACAGGATCAGACCTGTGAATCTGATTCTGTAGCCATC-T-T-CCATTG 896
|||||||| |||||||||||||||||||||||||||||||||||||||| | | ||||||
Sbjct 935 CAGACCGTTAAAACAGGATCAGACCTGTGAATCTGATTCTGTAGCCATCATCTTCCATTG 994
Query 897 AGTTGGGAGATTGGTATGTTGTAACATTACTGTGTATTAGCATAGATTTCCATTTATCTT 956
|| |||||||||| |||||||||| | || |||||||||||||||||||| ||||
Sbjct 995 AGC-GGGAGATTGGCATGTTGTAAC-T----GT--ATTAGCATAGATTTCCATTTTTCTT 1046
Query 957 GTATTAATAAACAACAACAAAAAGATTAGTTTTAATTTCTTATTATAGGCTCTCTCTCCT 1016
||||||||||||| ||| | |||||||||| | || ||||||| |||||||||||| | |
Sbjct 1047 GTATTAATAAACA-CAA-ATAAAGATTAGTGTCAAGTTCTTATCATAGGCTCTCTC-C-T 1102
Query 1017 CTGTTCCCGTTTCAT 1031
||||||| |||||||
Sbjct 1103 CTGTTCCAGTTTCAT 1117
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50535551882
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5