BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg494429 Length=2618 Score E Sequences producing significant alignments: (Bits) Value AT5G45540.1 | Symbols: | Protein of unknown function (DUF594) ... 3886 0.0 > AT5G45540.1 | Symbols: | Protein of unknown function (DUF594) | chr5:18458154-18460821 REVERSE LENGTH=2668 Length=2668 Score = 3886 bits (2104), Expect = 0.0 Identities = 2488/2663 (93%), Gaps = 68/2663 (3%) Strand=Plus/Plus Query 1 AAACTGTATGTGAAAGAAACGTTCACTAACCTTTGACACTTCTGTGAACATCCACAGTTT 60 ||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| | Sbjct 17 AAACTTTATGTGAAAGAAACGTTCACTAACCTTTGACACTACTGTGAACATCCACAG--T 74 Query 61 GAAACAAAGTACAGTCTCGTGGTCTAACGAAGAAGAAGACAAGATGACTGACATGATTCC 120 |||| |||| |||| | | |||| ||||||||||||||||||||||||||||||||||| Sbjct 75 -AAACCAAGTGCAGTTTTGCGGTCCAACGAAGAAGAAGACAAGATGACTGACATGATTCC 133 Query 121 ACCACATTTGAGGAAACTTTGGGACAAATGGAACATTCGTGGAGTCATAATACTCAGTCT 180 ||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 134 ACCACATCTGAGGAAACTTTGGGACAAATGGAACATACGTGGAGTCATAATACTCAGTCT 193 Query 181 CTTCCTCCAAACAATCCTTATTTTCTTTGCACCTAGCAGAAGACGCACCGCAAAGAAGCT 240 |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 194 TTTCCTCCAAACAATCCTTATTTTCTTTGCACCTAGCCGAAGACGCACCGCAAAGAAGCT 253 Query 241 CTTCCTTGTCCTCATATGGTCAGCTTATCTTCTTGCTGATTGGGCAGCTGATTACGCGGT 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 254 CTTCCTTGTCCTCATATGGTCAGCTTATCTTCTTGCTGATTGGGCAGCTGATTACGCGGT 313 Query 301 TGGGCAAATCTCAGACAGTCAAGAAGAAGAAGCTGCATCAAACAAA-CAGTCCAAGAACC 359 ||||||||||||||||||||||||||||||||||| |||||||||| || |||||||||| Sbjct 314 TGGGCAAATCTCAGACAGTCAAGAAGAAGAAGCTGAATCAAACAAACCA-TCCAAGAACC 372 Query 360 GTGAGCTGCTAGCTTTTTGGTCACCGTTTCTTCTCTTGCACCTTGGAGGTCCAGACACCA 419 ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 373 GTGAGCTGCTAGCATTTTGGTCACCGTTTCTTCTCTTGCACCTTGGAGGTCCAGATACCA 432 Query 420 TTACAGCACTTGCCCTGGAGGATAATGAGCTTTGGGACAGACATC-TGTTTAGTCTTGTC 478 |||||||||||||| |||||||||||||||||||||||||||| | |||||||||||||| Sbjct 433 TTACAGCACTTGCCTTGGAGGATAATGAGCTTTGGGACAGACA-CTTGTTTAGTCTTGTC 491 Query 479 TGTCAAGCAGTCGCCACTGTGTATGTGATCTTGTTGTCTATACCAAATAGGCTTCTGACT 538 |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 492 TGTCAAGCGGTAGCCACTGTGTATGTGATCTTGTTGTCTATACCAAATAGGCTTCTGACT 551 Query 539 CCAACATTAATCATGTTTGTGGGCGGAGTGATCAAGTATGTCGAGAGAACAGCTGCATTG 598 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| Sbjct 552 CCAACATTAATCATGTTTGTGGGAGGAGTGATCAAGTATGTCGAGAGAACAGCTGCGTTG 611 Query 599 TTCTCAGCGAGTCTTGGCAAGTTCAAGGATTCTATGCTCCACGATCCTGATCCTGGTGCT 658 |||||||||||||||| |||||||||||| ||||||||| |||||||||| ||||||||| Sbjct 612 TTCTCAGCGAGTCTTGACAAGTTCAAGGACTCTATGCTCGACGATCCTGACCCTGGTGCT 671 Query 659 AATTACGC-AAAGCTCATGAAGGAATATGAAGCTAAGAAGAATATGAATATGCCAAC--- 714 |||||||| ||| |||||| ||||||||||||||| |||||| |||||||||||||| Sbjct 672 AATTACGCGAAA-CTCATGGAGGAATATGAAGCTAGGAAGAAGATGAATATGCCAACTGA 730 Query 715 TG--AT-GTGGTGAAGGATCCAGAGAAAGGACGGGAAGGCAATACTCCGA-TTAGGCCCG 770 || || ||||||||||||||||||||||||||||||||||||||||| | ||||||||| Sbjct 731 TGTAATAGTGGTGAAGGATCCAGAGAAAGGACGGGAAGGCAATACTCC-AGTTAGGCCCG 789 Query 771 ACAAT-ACCTTGACCGCACTTCAAGTTATTCAGTATGCTTACAAGTACTTTAACATCTTC 829 ||||| | ||||||||||| ||||||||||||||||||||||| ||||||||||||||| Sbjct 790 ACAATGA-ATTGACCGCACTACAAGTTATTCAGTATGCTTACAAATACTTTAACATCTTC 848 Query 830 AAAGGTCTTATTGTTGATCTAATCTTCACCAATCAACAGCGCGATGAGAGCAGGAAATTC 889 |||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| Sbjct 849 AAAGGTCTTATTGTTGATCTAATCTTCACCAATCAAGAGCGCGACGAGAGCAGGAAATTC 908 Query 890 TTTGACAAGCTGAGTGCAGAAGAAGCTTTACGTATCATCGAAGTCGAGCTCGGCCTCATC 949 ||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 909 TTTGACAAGCTGACTGCAGAAGAAGCTTTACGTATCATCGAAGTCGAGCTCGGACTCATC 968 Query 950 TATGATTGTCTGTTCACCAAAGCAGAGATTCTGCATAACTGGACTGGAGCTGTGTTCCGG 1009 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 969 TATGATTGTCTGTTCACCAAAGCAGAGATTCTGCATAACTGGACTGGAGCTGTGTTCCGG 1028 Query 1010 TTTATAGCTTTGGGGTGCCTTGTTGCGTCTCTCTGCCTCTTCAAGATGAATAAGAAAGAT 1069 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1029 TTTATAGCTTTGGGGTGCCTTGTTGCATCTCTCTGCCTCTTCAAGATGAATAAGAAAGAT 1088 Query 1070 CAATATGATGGATTCGATGTCGTCCTTACTTACGCATTGCTCATATGTGGAATAGCTCTT 1129 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1089 CAATATGATGGATTCGATGTCGTCCTTACTTACGCATTGCTCATATGTGGAATAGCTCTT 1148 Query 1130 GATTCCATTGCTCTTCTCATGTTCTGTGTTTCTGACTGGACCATCGCTAGACTGAGGAAA 1189 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1149 GATTCCATTGCTCTTCTCATGTTCTGTGTATCTGACTGGACCATCGCTAGACTGAGGAAA 1208 Query 1190 CTAAAGGAAGACCTGGAAGAGAAAGACACCA-GAACAGACAGAGTTCTCAACTGGATCCT 1248 |||||||| ||||||||||||||||||||| || ||||||||||||||||||||||||| Sbjct 1209 CTAAAGGAGGACCTGGAAGAGAAAGACACCTTGA-CAGACAGAGTTCTCAACTGGATCCT 1267 Query 1249 CGATTTCAAGACGCTGAGATG-------T-----T-T-CC-AGGATAGACATGAAGTGCT 1293 |||||||||||||||||| || | | | || ||||| ||||| ||||||| Sbjct 1268 CGATTTCAAGACGCTGAGGTGGAAAAGATCCAAATGTTCCCAGGATGGACATCAAGTGCT 1327 Query 1294 CAACAGAAACTTTATGTTTCGCAGGTGGTCTGAGTATGTTCATGCTTACAACATGATTGG 1353 |||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| Sbjct 1328 CAACAGAAACTTTATGTTTCGCAGATGGTCTGAGTATGTTCATGCTTACAACTTGATTGG 1387 Query 1354 ATTCTGCTTGGGGATACGTCCCACGAGAATCCATTATACCAAGGGTAAGATACACAGTTT 1413 ||||| ||||| |||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1388 CTTCTGTTTGGGAATACGTCCCAAGAGAATCCATTATACCAAGGGTAAGATACACAGTTT 1447 Query 1414 CTTTCACCAGATCATTCACATTTTGTCCATAGATACTGCCATCGAAAATGCCACCAGAGG 1473 ||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1448 CTTTCACCAGACCGTTCACATTTTGTCCATAGATACTGCCATCGAAAATGCCACCAGAGG 1507 Query 1474 AGCTCGCCAGTTTCAGAATTGGATTGGTCGCTCTCTCAGTAATTTGTCCAAAAGAGACAA 1533 | ||||||||||||| || ||||||||||||| |||||| |||||||||||||||||||| Sbjct 1508 AACTCGCCAGTTTCATAACTGGATTGGTCGCTTTCTCAGCAATTTGTCCAAAAGAGACAA 1567 Query 1534 TTCGGTAATCCGTACCGGTCTTAGATGGTTTCTCTTTTTTCCTCACCTCCTCGGACTTTT 1593 ||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||| Sbjct 1568 TTCGGTAATCCGTACAGGTCTTAGATGGTTTCTCTTTTTCCCTCAACTCCTCGGACTTTT 1627 Query 1594 GATCTACAAGTTCCTAGACTTCTTCGGTATCAAAGATTTGGTTGAAGAGATAAGATTCAC 1653 ||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1628 GATCTACAACTTCCTCGACTTTTTCGGTATCAAAGATTTGGTTGAAGAGATAAGATTCAC 1687 Query 1654 AGTCAGTGATCGCCTCACCAGAGAACTATGGGAGTTCATATTCACAGAGGTGCAACAAAA 1713 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1688 GGTCAGTGATCGCCTCACCAGAGAACTATGGGAGTTCATATTCACAGAGGTGCAACAAAA 1747 Query 1714 ACACCAATTTGCTGAAGACCAAGAAAGTGCAAAGGATATATCTTCAGCTAGAGGAAACTG 1773 ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 1748 ACACCGATTTGCTGAAGACCAAGAAAGTGCAAAGGGTATATCTTCAGCTAGAGGAAACTG 1807 Query 1774 GACTCTACTTCAAACATCAAGCaaaaa-aaGAGAATACGGATCAGACCATGCGAAACTTC 1832 |||||||||| |||||||||||||||| || |||| ||||| |||||||| ||||||||| Sbjct 1808 GACTCTACTTGAAACATCAAGCAAAAAGAA-AGAAGACGGAACAGACCATACGAAACTTC 1866 Query 1833 TGCAGTATGTGACAGAAAAGGATTACGATCAGAGCATTCTACTGTGGCACATCGCCACAG 1892 ||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1867 TGCAGTACGTGACGGAGAAGGATTACGATCAGAGCATTCTACTGTGGCACATCGCCACAG 1926 Query 1893 AACTCTTATACCAAAAGTCAATAGACCAAGAAGTGACAACAGAGAAACAAGAACACCGTA 1952 ||||||||||||||||| |||||||| || |||| || |||||||| |||||||| ||| Sbjct 1927 AACTCTTATACCAAAAGCCAATAGACAAAAAAGT--CA-CAGAGAAAGAAGAACACAGTA 1983 Query 1953 --AGC-GAGAGAAAGATGAACACAGTAACCGAGAGTTCAGCAAAATCCTTTCGGACTACA 2009 | | |||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1984 CTAACCGAGAGAAAGAAGAACACAGTAACCGAGAGTTCAGCAAAATCCTTTCGGACTACA 2043 Query 2010 TGATGTACCTCCTTATAGTGCAGCCAACTCTGATGTCAGCTGTTTCTGGAATCATAAAGA 2069 |||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| Sbjct 2044 TGATGTACCTCCTTATAGTGCAGCCAACTCTGATGTCAGCTGTTTCCGGAATCGCAAAGA 2103 Query 2070 TACGTTTCAGAGACACATGCGAAGAGGCAAAGGACTTTTTCCGGAGGAGGCATATCGACA 2129 |||||||||||||||||||||||||||||||||||||||||| |||||| ||| |||||| Sbjct 2104 TACGTTTCAGAGACACATGCGAAGAGGCAAAGGACTTTTTCCAGAGGAGACATGTCGACA 2163 Query 2130 AATCAAGGTATG-aaaaaaaCAACCTTGTGAAAGAAGCCTGTCGAGCTATTCTCTCTGTC 2188 ||||||| |||| ||||||| ||||| |||||||||| ||||||||||||||||||||| Sbjct 2164 AATCAAGATATGTAAAAAAA-AACCTCATGAAAGAAGCATGTCGAGCTATTCTCTCTGTC 2222 Query 2189 AACACAGAAATCGATCCAATGGCTGTGAAAGGAGACAGAAGCAAATCCGTGCTGTTT-GA 2247 ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || Sbjct 2223 AACACAGAAATCGATCCAATGGCTGTGAAAGGAGACAGAAGCAAATCCGTGCT-TTTCGA 2281 Query 2248 TGCAAGCGTGCTTGCAAAGGAGCTAGA-GAAAGAAGGCGGAAACATGTGGGAAGTAGTGA 2306 |||||||||||| ||||| |||||| | ||| ||||| | |||||||||||||||||||| Sbjct 2282 TGCAAGCGTGCTCGCAAAAGAGCTA-ATGAATGAAGGTGAAAACATGTGGGAAGTAGTGA 2340 Query 2307 GCAAAGTGTGGGTTGAGTTACTTTGCTATGCATCACTTCATTGTAACTCTCAAGAACATG 2366 ||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| Sbjct 2341 GCAAAGTGTGGGTTGAGTTGCTTTGCTATGCATCACTTCATTGTGACTCTCAAGAACATG 2400 Query 2367 CTTCTCAACTCAGCAAAGGCGGTGAACTCATCAACTTTGTTTGGCTATTAATGGCTCATT 2426 |||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 2401 CTTCTCAACTTAGCAAAGGCGGTGAACTTATCAACTTTGTTTGGCTATTAATGGCTCATT 2460 Query 2427 TTGGACTCGGAGATCAATTCCAAATCAACAGAGATGATGCAAGAGCCAAACTCATTGTCG 2486 |||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| Sbjct 2461 TTGGACTCGGAGATCAATTCCAAATCAACAGAGATGATGCAAGAGCCAAACTTATAGTCG 2520 Query 2487 CCAATTGAT----CA-CACAAACTCGGTTTCTTCATCTACTTTACTTCCTTGAATAA-TC 2540 |||| |||| || ||||||| | | ||| || | ||||||||||||||||| || Sbjct 2521 CCAACTGATTTATCAACACAAAC-CTGCA-CTT-ATGT--TTTACTTCCTTGAATAAATC 2575 Query 2541 TGCACTTGTAGTGTAGTAAACTTC---C-T-AGTCTATGCTTATGAACATGAAAATCATC 2595 |||||| ||||||||||| ||| | | | |||||||||||||||||||||||||| Sbjct 2576 TGCACTAATAGTGTAGTAA-CTTTAGTCATCA-TCTATGCTTATGAACATGAAAATCATA 2633 Query 2596 TCCTTTGTTATCAATTTCATTCA 2618 ||||||||||||||||||||||| Sbjct 2634 TCCTTTGTTATCAATTTCATTCA 2656 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 129982549313 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5