BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494429
Length=2618
Score E
Sequences producing significant alignments: (Bits) Value
AT5G45540.1 | Symbols: | Protein of unknown function (DUF594) ... 3886 0.0
> AT5G45540.1 | Symbols: | Protein of unknown function (DUF594)
| chr5:18458154-18460821 REVERSE LENGTH=2668
Length=2668
Score = 3886 bits (2104), Expect = 0.0
Identities = 2488/2663 (93%), Gaps = 68/2663 (3%)
Strand=Plus/Plus
Query 1 AAACTGTATGTGAAAGAAACGTTCACTAACCTTTGACACTTCTGTGAACATCCACAGTTT 60
||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| |
Sbjct 17 AAACTTTATGTGAAAGAAACGTTCACTAACCTTTGACACTACTGTGAACATCCACAG--T 74
Query 61 GAAACAAAGTACAGTCTCGTGGTCTAACGAAGAAGAAGACAAGATGACTGACATGATTCC 120
|||| |||| |||| | | |||| |||||||||||||||||||||||||||||||||||
Sbjct 75 -AAACCAAGTGCAGTTTTGCGGTCCAACGAAGAAGAAGACAAGATGACTGACATGATTCC 133
Query 121 ACCACATTTGAGGAAACTTTGGGACAAATGGAACATTCGTGGAGTCATAATACTCAGTCT 180
||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 134 ACCACATCTGAGGAAACTTTGGGACAAATGGAACATACGTGGAGTCATAATACTCAGTCT 193
Query 181 CTTCCTCCAAACAATCCTTATTTTCTTTGCACCTAGCAGAAGACGCACCGCAAAGAAGCT 240
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 194 TTTCCTCCAAACAATCCTTATTTTCTTTGCACCTAGCCGAAGACGCACCGCAAAGAAGCT 253
Query 241 CTTCCTTGTCCTCATATGGTCAGCTTATCTTCTTGCTGATTGGGCAGCTGATTACGCGGT 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 254 CTTCCTTGTCCTCATATGGTCAGCTTATCTTCTTGCTGATTGGGCAGCTGATTACGCGGT 313
Query 301 TGGGCAAATCTCAGACAGTCAAGAAGAAGAAGCTGCATCAAACAAA-CAGTCCAAGAACC 359
||||||||||||||||||||||||||||||||||| |||||||||| || ||||||||||
Sbjct 314 TGGGCAAATCTCAGACAGTCAAGAAGAAGAAGCTGAATCAAACAAACCA-TCCAAGAACC 372
Query 360 GTGAGCTGCTAGCTTTTTGGTCACCGTTTCTTCTCTTGCACCTTGGAGGTCCAGACACCA 419
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 373 GTGAGCTGCTAGCATTTTGGTCACCGTTTCTTCTCTTGCACCTTGGAGGTCCAGATACCA 432
Query 420 TTACAGCACTTGCCCTGGAGGATAATGAGCTTTGGGACAGACATC-TGTTTAGTCTTGTC 478
|||||||||||||| |||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 433 TTACAGCACTTGCCTTGGAGGATAATGAGCTTTGGGACAGACA-CTTGTTTAGTCTTGTC 491
Query 479 TGTCAAGCAGTCGCCACTGTGTATGTGATCTTGTTGTCTATACCAAATAGGCTTCTGACT 538
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 492 TGTCAAGCGGTAGCCACTGTGTATGTGATCTTGTTGTCTATACCAAATAGGCTTCTGACT 551
Query 539 CCAACATTAATCATGTTTGTGGGCGGAGTGATCAAGTATGTCGAGAGAACAGCTGCATTG 598
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 552 CCAACATTAATCATGTTTGTGGGAGGAGTGATCAAGTATGTCGAGAGAACAGCTGCGTTG 611
Query 599 TTCTCAGCGAGTCTTGGCAAGTTCAAGGATTCTATGCTCCACGATCCTGATCCTGGTGCT 658
|||||||||||||||| |||||||||||| ||||||||| |||||||||| |||||||||
Sbjct 612 TTCTCAGCGAGTCTTGACAAGTTCAAGGACTCTATGCTCGACGATCCTGACCCTGGTGCT 671
Query 659 AATTACGC-AAAGCTCATGAAGGAATATGAAGCTAAGAAGAATATGAATATGCCAAC--- 714
|||||||| ||| |||||| ||||||||||||||| |||||| ||||||||||||||
Sbjct 672 AATTACGCGAAA-CTCATGGAGGAATATGAAGCTAGGAAGAAGATGAATATGCCAACTGA 730
Query 715 TG--AT-GTGGTGAAGGATCCAGAGAAAGGACGGGAAGGCAATACTCCGA-TTAGGCCCG 770
|| || ||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 731 TGTAATAGTGGTGAAGGATCCAGAGAAAGGACGGGAAGGCAATACTCC-AGTTAGGCCCG 789
Query 771 ACAAT-ACCTTGACCGCACTTCAAGTTATTCAGTATGCTTACAAGTACTTTAACATCTTC 829
||||| | ||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 790 ACAATGA-ATTGACCGCACTACAAGTTATTCAGTATGCTTACAAATACTTTAACATCTTC 848
Query 830 AAAGGTCTTATTGTTGATCTAATCTTCACCAATCAACAGCGCGATGAGAGCAGGAAATTC 889
|||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct 849 AAAGGTCTTATTGTTGATCTAATCTTCACCAATCAAGAGCGCGACGAGAGCAGGAAATTC 908
Query 890 TTTGACAAGCTGAGTGCAGAAGAAGCTTTACGTATCATCGAAGTCGAGCTCGGCCTCATC 949
||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 909 TTTGACAAGCTGACTGCAGAAGAAGCTTTACGTATCATCGAAGTCGAGCTCGGACTCATC 968
Query 950 TATGATTGTCTGTTCACCAAAGCAGAGATTCTGCATAACTGGACTGGAGCTGTGTTCCGG 1009
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 969 TATGATTGTCTGTTCACCAAAGCAGAGATTCTGCATAACTGGACTGGAGCTGTGTTCCGG 1028
Query 1010 TTTATAGCTTTGGGGTGCCTTGTTGCGTCTCTCTGCCTCTTCAAGATGAATAAGAAAGAT 1069
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1029 TTTATAGCTTTGGGGTGCCTTGTTGCATCTCTCTGCCTCTTCAAGATGAATAAGAAAGAT 1088
Query 1070 CAATATGATGGATTCGATGTCGTCCTTACTTACGCATTGCTCATATGTGGAATAGCTCTT 1129
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1089 CAATATGATGGATTCGATGTCGTCCTTACTTACGCATTGCTCATATGTGGAATAGCTCTT 1148
Query 1130 GATTCCATTGCTCTTCTCATGTTCTGTGTTTCTGACTGGACCATCGCTAGACTGAGGAAA 1189
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1149 GATTCCATTGCTCTTCTCATGTTCTGTGTATCTGACTGGACCATCGCTAGACTGAGGAAA 1208
Query 1190 CTAAAGGAAGACCTGGAAGAGAAAGACACCA-GAACAGACAGAGTTCTCAACTGGATCCT 1248
|||||||| ||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 1209 CTAAAGGAGGACCTGGAAGAGAAAGACACCTTGA-CAGACAGAGTTCTCAACTGGATCCT 1267
Query 1249 CGATTTCAAGACGCTGAGATG-------T-----T-T-CC-AGGATAGACATGAAGTGCT 1293
|||||||||||||||||| || | | | || ||||| ||||| |||||||
Sbjct 1268 CGATTTCAAGACGCTGAGGTGGAAAAGATCCAAATGTTCCCAGGATGGACATCAAGTGCT 1327
Query 1294 CAACAGAAACTTTATGTTTCGCAGGTGGTCTGAGTATGTTCATGCTTACAACATGATTGG 1353
|||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||
Sbjct 1328 CAACAGAAACTTTATGTTTCGCAGATGGTCTGAGTATGTTCATGCTTACAACTTGATTGG 1387
Query 1354 ATTCTGCTTGGGGATACGTCCCACGAGAATCCATTATACCAAGGGTAAGATACACAGTTT 1413
||||| ||||| |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1388 CTTCTGTTTGGGAATACGTCCCAAGAGAATCCATTATACCAAGGGTAAGATACACAGTTT 1447
Query 1414 CTTTCACCAGATCATTCACATTTTGTCCATAGATACTGCCATCGAAAATGCCACCAGAGG 1473
||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1448 CTTTCACCAGACCGTTCACATTTTGTCCATAGATACTGCCATCGAAAATGCCACCAGAGG 1507
Query 1474 AGCTCGCCAGTTTCAGAATTGGATTGGTCGCTCTCTCAGTAATTTGTCCAAAAGAGACAA 1533
| ||||||||||||| || ||||||||||||| |||||| ||||||||||||||||||||
Sbjct 1508 AACTCGCCAGTTTCATAACTGGATTGGTCGCTTTCTCAGCAATTTGTCCAAAAGAGACAA 1567
Query 1534 TTCGGTAATCCGTACCGGTCTTAGATGGTTTCTCTTTTTTCCTCACCTCCTCGGACTTTT 1593
||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 1568 TTCGGTAATCCGTACAGGTCTTAGATGGTTTCTCTTTTTCCCTCAACTCCTCGGACTTTT 1627
Query 1594 GATCTACAAGTTCCTAGACTTCTTCGGTATCAAAGATTTGGTTGAAGAGATAAGATTCAC 1653
||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1628 GATCTACAACTTCCTCGACTTTTTCGGTATCAAAGATTTGGTTGAAGAGATAAGATTCAC 1687
Query 1654 AGTCAGTGATCGCCTCACCAGAGAACTATGGGAGTTCATATTCACAGAGGTGCAACAAAA 1713
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1688 GGTCAGTGATCGCCTCACCAGAGAACTATGGGAGTTCATATTCACAGAGGTGCAACAAAA 1747
Query 1714 ACACCAATTTGCTGAAGACCAAGAAAGTGCAAAGGATATATCTTCAGCTAGAGGAAACTG 1773
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1748 ACACCGATTTGCTGAAGACCAAGAAAGTGCAAAGGGTATATCTTCAGCTAGAGGAAACTG 1807
Query 1774 GACTCTACTTCAAACATCAAGCaaaaa-aaGAGAATACGGATCAGACCATGCGAAACTTC 1832
|||||||||| |||||||||||||||| || |||| ||||| |||||||| |||||||||
Sbjct 1808 GACTCTACTTGAAACATCAAGCAAAAAGAA-AGAAGACGGAACAGACCATACGAAACTTC 1866
Query 1833 TGCAGTATGTGACAGAAAAGGATTACGATCAGAGCATTCTACTGTGGCACATCGCCACAG 1892
||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1867 TGCAGTACGTGACGGAGAAGGATTACGATCAGAGCATTCTACTGTGGCACATCGCCACAG 1926
Query 1893 AACTCTTATACCAAAAGTCAATAGACCAAGAAGTGACAACAGAGAAACAAGAACACCGTA 1952
||||||||||||||||| |||||||| || |||| || |||||||| |||||||| |||
Sbjct 1927 AACTCTTATACCAAAAGCCAATAGACAAAAAAGT--CA-CAGAGAAAGAAGAACACAGTA 1983
Query 1953 --AGC-GAGAGAAAGATGAACACAGTAACCGAGAGTTCAGCAAAATCCTTTCGGACTACA 2009
| | |||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1984 CTAACCGAGAGAAAGAAGAACACAGTAACCGAGAGTTCAGCAAAATCCTTTCGGACTACA 2043
Query 2010 TGATGTACCTCCTTATAGTGCAGCCAACTCTGATGTCAGCTGTTTCTGGAATCATAAAGA 2069
|||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 2044 TGATGTACCTCCTTATAGTGCAGCCAACTCTGATGTCAGCTGTTTCCGGAATCGCAAAGA 2103
Query 2070 TACGTTTCAGAGACACATGCGAAGAGGCAAAGGACTTTTTCCGGAGGAGGCATATCGACA 2129
|||||||||||||||||||||||||||||||||||||||||| |||||| ||| ||||||
Sbjct 2104 TACGTTTCAGAGACACATGCGAAGAGGCAAAGGACTTTTTCCAGAGGAGACATGTCGACA 2163
Query 2130 AATCAAGGTATG-aaaaaaaCAACCTTGTGAAAGAAGCCTGTCGAGCTATTCTCTCTGTC 2188
||||||| |||| ||||||| ||||| |||||||||| |||||||||||||||||||||
Sbjct 2164 AATCAAGATATGTAAAAAAA-AACCTCATGAAAGAAGCATGTCGAGCTATTCTCTCTGTC 2222
Query 2189 AACACAGAAATCGATCCAATGGCTGTGAAAGGAGACAGAAGCAAATCCGTGCTGTTT-GA 2247
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 2223 AACACAGAAATCGATCCAATGGCTGTGAAAGGAGACAGAAGCAAATCCGTGCT-TTTCGA 2281
Query 2248 TGCAAGCGTGCTTGCAAAGGAGCTAGA-GAAAGAAGGCGGAAACATGTGGGAAGTAGTGA 2306
|||||||||||| ||||| |||||| | ||| ||||| | ||||||||||||||||||||
Sbjct 2282 TGCAAGCGTGCTCGCAAAAGAGCTA-ATGAATGAAGGTGAAAACATGTGGGAAGTAGTGA 2340
Query 2307 GCAAAGTGTGGGTTGAGTTACTTTGCTATGCATCACTTCATTGTAACTCTCAAGAACATG 2366
||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct 2341 GCAAAGTGTGGGTTGAGTTGCTTTGCTATGCATCACTTCATTGTGACTCTCAAGAACATG 2400
Query 2367 CTTCTCAACTCAGCAAAGGCGGTGAACTCATCAACTTTGTTTGGCTATTAATGGCTCATT 2426
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 2401 CTTCTCAACTTAGCAAAGGCGGTGAACTTATCAACTTTGTTTGGCTATTAATGGCTCATT 2460
Query 2427 TTGGACTCGGAGATCAATTCCAAATCAACAGAGATGATGCAAGAGCCAAACTCATTGTCG 2486
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 2461 TTGGACTCGGAGATCAATTCCAAATCAACAGAGATGATGCAAGAGCCAAACTTATAGTCG 2520
Query 2487 CCAATTGAT----CA-CACAAACTCGGTTTCTTCATCTACTTTACTTCCTTGAATAA-TC 2540
|||| |||| || ||||||| | | ||| || | ||||||||||||||||| ||
Sbjct 2521 CCAACTGATTTATCAACACAAAC-CTGCA-CTT-ATGT--TTTACTTCCTTGAATAAATC 2575
Query 2541 TGCACTTGTAGTGTAGTAAACTTC---C-T-AGTCTATGCTTATGAACATGAAAATCATC 2595
|||||| ||||||||||| ||| | | | ||||||||||||||||||||||||||
Sbjct 2576 TGCACTAATAGTGTAGTAA-CTTTAGTCATCA-TCTATGCTTATGAACATGAAAATCATA 2633
Query 2596 TCCTTTGTTATCAATTTCATTCA 2618
|||||||||||||||||||||||
Sbjct 2634 TCCTTTGTTATCAATTTCATTCA 2656
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 129982549313
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5