BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494430
Length=2435
Score E
Sequences producing significant alignments: (Bits) Value
AT5G45530.1 | Symbols: | Protein of unknown function (DUF594) ... 3624 0.0
> AT5G45530.1 | Symbols: | Protein of unknown function (DUF594)
| chr5:18454316-18457277 REVERSE LENGTH=2452
Length=2452
Score = 3624 bits (1962), Expect = 0.0
Identities = 2281/2437 (94%), Gaps = 13/2437 (1%)
Strand=Plus/Plus
Query 1 AACGAGCTTAGTTTTTCCAGACAAAAAGAGTAATAACAATGCAAGTGATTCCACCaaaaa 60
||||||||||||||||||| || |||||||||| ||| |||||||||||||||||| ||
Sbjct 18 AACGAGCTTAGTTTTTCCACACCAAAAGAGTAACAACGATGCAAGTGATTCCACCAGCAA 77
Query 61 taaaaaaGATATTAGACAAGTGGAACATCAGAGGACTTGTGATATTATCTCTGTTGTTCC 120
||||||||||||||||||| |||||||||||||||||||||||| | |||||||||||||
Sbjct 78 TAAAAAAGATATTAGACAAATGGAACATCAGAGGACTTGTGATAATGTCTCTGTTGTTCC 137
Query 121 AAACGTCTCTTATCTTCCTTGCACCAATGCGGAAACGCACATCAAAGAAGTTGCTCGCTG 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 138 AAACGTCTCTTATCTTCCTTGCACCAATGCGGAAACGCACATCAAAGAAGTTGCTCGCCG 197
Query 181 CGTTTCTATGGACCGCATATCTTTTAGCGGATTGGACCGCTAATTATGCGGTGTCTCAGA 240
|| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 198 CGGTTCTATGGACAGCATATCTTTTAGCGGATTGGACCGCTAATTATGCGGTGTCTCAGA 257
Query 241 TCACTAAAAACCAAGGGAAAGAACCAGAACCTGACGATCCTCCAAAAAACAAGAAGCTTC 300
||||||| |||||||| |||||| ||||||||| ||||||||||||||||||||||||||
Sbjct 258 TCACTAAGAACCAAGGAAAAGAAACAGAACCTGGCGATCCTCCAAAAAACAAGAAGCTTC 317
Query 301 TTGCTCTATGGGCACCATTCTTGTTGTTGCATCTTGGTGGTCCGGACACGATAACCGCGT 360
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 318 TTGCTCTATGGGCACCATTCTTGTTGTTGCATCTTGGTGGGCCGGACACGATAACCGCGT 377
Query 361 TGGCTCTTGAGGATAATGCGTTATGGCAACGTCATTTGTTTGGCCTCGTCTCTCAAGCGC 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 378 TGGCTCTTGAGGATAATGCGTTATGGCAACGTCATTTGTTTGGCCTCGTCTCTCAAGCTC 437
Query 421 TTGCAGGTGTTTATGCGGTGGTGCAATCGCTAGAAAACGCACTATGGCCACCAATCACAC 480
||||||||||||||||||||||||||||||||||||||| | ||||||||||||| ||||
Sbjct 438 TTGCAGGTGTTTATGCGGTGGTGCAATCGCTAGAAAACGTATTATGGCCACCAATTACAC 497
Query 481 TTTTATTCATCACCGCAACGATTAAATACGTGGAGAGGTCACGAGCATTGTACTCAGCGA 540
||||||||||||| | ||||||||| |||||||||||| |||||||||||||||||||||
Sbjct 498 TTTTATTCATCACAGGAACGATTAAGTACGTGGAGAGGACACGAGCATTGTACTCAGCGA 557
Query 541 GCTTGGACAAATTCAAAGACAGAATGCTTCAACGAGCAGACGCTGGTCCTAACTACGCTA 600
|||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 558 GCTTAGACAAATTCAAAGACAGAATGCTTCAACGAGCAGACGCTGGTTCTAACTACGCTA 617
Query 601 AGCTAATGGAAGAATACGCTTCAAGAAAAGA-GTCAAATCTCCCAACTGAAATCTTCTTA 659
||||||||||||||| ||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 618 AGCTAATGGAAGAATTCGCTTCAAGAAAA-ATGTCAAATCTCCCAACTGAAATCTTCTTA 676
Query 660 ACCGACGAACCCGACAAGCACGAGAGACCCCCTACACTCGTTAAACCGGACCGAGATTTA 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 677 ACCGACGAACCCGACAAGCACGAGAGACCCCCTACACTCGTTAAACCGGACCGAGATTTA 736
Query 720 ACCGATCTCGAAATCGTTCAATACGGCTACAAATTCTTCAACACTTTCAAAGGTCTTGTT 779
|||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 737 ACCGATCTCGAAATCGTTCAATACGGTTTCAAATTCTTCAACACTTTCAAAGGTCTTGTT 796
Query 780 GTTGATCTTATTTTCAGTTTCCGTGAGCGAGACGAAAGCAGAGATTTCTTCAATA-AGTT 838
|||||||| ||||||||||||||||||||||||||||| |||||||||||||| | ||||
Sbjct 797 GTTGATCTCATTTTCAGTTTCCGTGAGCGAGACGAAAGTAGAGATTTCTTCAA-AGAGTT 855
Query 839 GAAACCGGGAGAAGCTCTTCGGATTATCGAAACCGAGCTTGGATTTCTATACGAATCGAT 898
|||||| |||||||||||||| ||||||||||||||||| || ||||| |||||||||||
Sbjct 856 GAAACCTGGAGAAGCTCTTCGAATTATCGAAACCGAGCTCGGTTTTCTTTACGAATCGAT 915
Query 899 GTATACGAAAACCGCAATTCTTCATACGGGAATCGGTACTCTGTTTCGGTTAATTTCCTT 958
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 916 GTATACCAAAACCGCAATTCTTCATACCGGAATCGGTACTCTGTTTCGGTTAATTTCCTT 975
Query 959 TGGATCGCTTCTTTCTTCCTTCTTTGTCTTCCATCGTAGGCCACTTAAGTCT-AAGGATT 1017
|||||| |||||||||||||||||||||||||||||||| || || ||||| ||| |||
Sbjct 976 TGGATCACTTCTTTCTTCCTTCTTTGTCTTCCATCGTAGACCGCTAAAGTCCGAAG-ATT 1034
Query 1018 TTCATGGAGCAGATGTTGTGATCACTTACATTTTGTTTATAGTTGGTATCGCACTTGATC 1077
|||||||||||||||| ||||| |||||| |||||||||||||||||||||| |||||||
Sbjct 1035 TTCATGGAGCAGATGTGGTGATTACTTACGTTTTGTTTATAGTTGGTATCGCGCTTGATC 1094
Query 1078 TTGCGTCAATGGTCATTTTCTTGCTCTCGGATTGGACATTCGCGGTATTGAGAAAGCTTA 1137
||||||||||||||||||||||||||||||||||||||||||| ||| | ||||| ||||
Sbjct 1095 TTGCGTCAATGGTCATTTTCTTGCTCTCGGATTGGACATTCGCAGTACTAAGAAACCTTA 1154
Query 1138 AGGATGATCCAGAGGAAAAGAATAATAGTTCTATCGACTTTTTACTCAATTGGTTTCTCG 1197
||||||||||||||||||||| || | | ||||||||| |||| |||| ||||||||||
Sbjct 1155 AGGATGATCCAGAGGAAAAGAGTACT--T-CTATCGACTCTTTATTCAACTGGTTTCTCG 1211
Query 1198 CGTTTAGGAAACCGCGTTGGAAGGAGCATACATGCAACGGAAACCAGACCCACAAGGTGC 1257
|||||||||||| ||||||||| |||||||||||||||||||||| |||||| |||| |
Sbjct 1212 AGTTTAGGAAACCCCGTTGGAAGAAGCATACATGCAACGGAAACCAAACCCACGAGGTAC 1271
Query 1258 TCTCGACGGGGTTTTTGT-CACGGAGATGGTCAGGCACGATCTACGGATTTAATTTCATC 1316
|||||||||||||||| | |||| ||||||||||||||||||||||||||||| ||||||
Sbjct 1272 TCTCGACGGGGTTTTT-TACACGTAGATGGTCAGGCACGATCTACGGATTTAACTTCATC 1330
Query 1317 GGATTTTGTCTGAAAGCCAAAGTTTCAAGAATCCATAAGAAGAGAAACTGCAATGTTTTA 1376
|| |||||||| ||||||||||||||||||||||| ||||||||||||| || | |||
Sbjct 1331 GGGTTTTGTCTTAAAGCCAAAGTTTCAAGAATCCACCAGAAGAGAAACTGTAACCTATTA 1390
Query 1377 GTGTGGGAATCCGTGGTTACACTATTCGATCTGGTGATCAGAAGAATCAAAATGTTGTTT 1436
|||||||| | ||||||| | ||||||||||| ||||| ||||||||| ||||| || ||
Sbjct 1391 GTGTGGGATTACGTGGTTTCGCTATTCGATCTAGTGATAAGAAGAATCCAAATGATGATT 1450
Query 1437 GGATCGATCAAGAATGTTAATAGATCAATAAGAAGCGTGCTCCGACGGTGGTCTAAAAAG 1496
|||| ||||||||||||||||||||||||||||||||||||||| | |||||||| |||
Sbjct 1451 GGATGGATCAAGAATGTTAATAGATCAATAAGAAGCGTGCTCCGGCAATGGTCTAAGAAG 1510
Query 1497 AATCGGATGATTCGTTACACGGTTTATCCGATAT-TCCTCGTATTCTTTGCCGGTATTCC 1555
|||| ||||||||||| ||| ||||| ||| ||| || |||| ||||| |||||||||||
Sbjct 1511 AATCCGATGATTCGTTGCACAGTTTACCCGTTATATC-TCGTGTTCTTCGCCGGTATTCC 1569
Query 1556 TGAAGTTTTTAGAGTCCTTTGGAAATACGTTGATCGAATCTTCAGTGTTAAAACTTACCT 1615
|||||| || |||||||||||||||||| ||||||||||||| ||||||| | |||| ||
Sbjct 1570 TGAAGTATTCAGAGTCCTTTGGAAATACATTGATCGAATCTTTAGTGTTACATCTTATCT 1629
Query 1616 AGACGAGATTAGGTTCATTTCGAGAGAGCCGTTGACGAAGAATCAATGGGAATTTATATT 1675
||||| |||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 1630 AGACGGGATTAGGTTCATTTCGAGAGAGCCTTTGACGAAGAATCAATGGGAGTTTATATT 1689
Query 1676 CAATGAGCTGAAGGATAAGTCCAGCTTTGCGGAAACACCTGAAGTTGCAAAGAAAGTGTC 1735
||||||| | ||||||||||| | ||||||||||| |||||||||||||||||||||||
Sbjct 1690 CAATGAGGTCAAGGATAAGTCGGGGTTTGCGGAAACGCCTGAAGTTGCAAAGAAAGTGTC 1749
Query 1736 TTGGGCGAGAGGAGAATGGGCTTTACGAGATTCAAAATTGGCGGAAGTTGATACATTGAT 1795
||||||||||||||||||||||||||||||||| |||||| |||||||||||| |||||
Sbjct 1750 TTGGGCGAGAGGAGAATGGGCTTTACGAGATTCGAAATTGATGGAAGTTGATACGTTGAT 1809
Query 1796 GCGTTATATAGAGAAAGTTGATTATGATCAAAGTCTCCTCCTTTGGCATATTGCTACTGA 1855
|||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 1810 GCGTTACATAGAGAAAGTTGATTATGATCAAAGTCTTCTCCTTTGGCACATTGCTACTGA 1869
Query 1856 GCTCTGTTTTCAAAAAGAAGATGATGGGAAGATGGAGAATCTGAGCAAAGAAAGTTATGA 1915
||||||||||||||||||||| | ||||||||||||||| ||||||| |||| |||||||
Sbjct 1870 GCTCTGTTTTCAAAAAGAAGAAGGTGGGAAGATGGAGAAGCTGAGCAGAGAAGGTTATGA 1929
Query 1916 TGACCGAGAATTCAGCAAGATTATATCGGATTACATGATGTATTTGTTGATAATGCGACC 1975
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1930 TGACCGAGAATTCAGCAAGATTATATCGGACTACATGATGTATTTGTTGATAATGCGACC 1989
Query 1976 GAAACTGATGTCGGAAGTGGCGGGAATCGGGACTATACGGTTCAGAGACACTAAAGCTGA 2035
||| || ||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 1990 GAAGCTAATGTCGGAAGTGGCGGGAATCGGGACTATACGGTTTAGAGATACTAAAGCTGA 2049
Query 2036 AGCTGAGAGGTTTTTCAAAGGACGGCAAATCAAGGACTTGAGAGATATGAAACGAGCGAG 2095
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2050 AGCTGAGAGGTTTTTCAAAGGAAGGCAAATCAAGGACTTGAGAGATATGAAACGAGCGAG 2109
Query 2096 TGAGACGGTTTTATTGGTTAGTACCGATATTGAACCGATTCTTGTGAAGGGAGATCGAAG 2155
|||||||||| |||||||||||| ||||||||| ||||| ||||||||||||||||||||
Sbjct 2110 TGAGACGGTTCTATTGGTTAGTAACGATATTGAGCCGATACTTGTGAAGGGAGATCGAAG 2169
Query 2156 CAAGTCGGTTCTTTTTGATGCGAGTATGTTGGCCAAAAAGCTTCAGAATTTGAAAGACAG 2215
||||||||||||||| ||||||||||||||||| ||| |||||||||| |||||||| ||
Sbjct 2170 CAAGTCGGTTCTTTTCGATGCGAGTATGTTGGCGAAAGAGCTTCAGAACTTGAAAGAGAG 2229
Query 2216 TAGTAATGAAGATGGGAAATGGAAAGTGTTGAGCAAAGTGTGGGTTGAGTTGCTATGTTA 2275
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2230 TAGTAATGAAGATGGGAAATGGAGAGTGTTGAGCAAAGTGTGGGTTGAGTTGCTATGTTA 2289
Query 2276 CGCAGCAAGTCATTGTAAAGCGACGGAACATGTGGCGCAACTTAGCAGAGGCGGTGAGCT 2335
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 2290 CGCAGCAAGTCATTGTAAAGCGACGGAGCATGTGGCGCAACTTAGCAGAGGTGGTGAGCT 2349
Query 2336 ACTTAACTTTGTTTGGTTGTTGATGGCTCACTTTGGATTAGGAGATCAGTTTCAGATCAA 2395
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2350 TCTTAACTTTGTTTGGTTGTTGATGGCTCACTTCGGATTAGGAGATCAGTTTCAGATCAA 2409
Query 2396 TAAAGGAGATGCTAGAGCTAAACTCGTTGTAGGAGAG 2432
|||||| ||||||||||||||||||||||||||||||
Sbjct 2410 TAAAGGTGATGCTAGAGCTAAACTCGTTGTAGGAGAG 2446
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 120933112905
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5