BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494434
Length=2327
Score E
Sequences producing significant alignments: (Bits) Value
AT5G45500.1 | Symbols: | RNI-like superfamily protein | chr5:1... 2191 0.0
> AT5G45500.1 | Symbols: | RNI-like superfamily protein | chr5:18432458-18435469
REVERSE LENGTH=2626
Length=2626
Score = 2191 bits (1186), Expect = 0.0
Identities = 1441/1562 (92%), Gaps = 26/1562 (2%)
Strand=Plus/Plus
Query 341 AGAAGGCCCGGACGATCATCATATTCCTAAGCTGCAACGTAATCTTCGTTTGCTCAAGGA 400
||||||||| || |||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 483 AGAAGGCCCAGATGATCATCATATTCCTAAGCTGCAACGAAATCTTCGTTTGCTTAAGGA 542
Query 401 AGACGTGGTTAAGCTGCAAGATCTTCGCACCGAAGTTGCAGAAGAGGTGTGGAAACATAT 460
||||||| |||||||||| |||| |||| ||||| ||||| |||||||||||||||||
Sbjct 543 GGACGTGGCTAAGCTGCAATATCTCCGCAGTGAAGTCGCAGAGGAGGTGTGGAAACATAT 602
Query 461 TCGTCCACTTGAATTGCTGCTTGATAAA-GTGG-AAAA-AG-GGGAGAAGGACCCTTCGA 516
|||||||||||||||||||||||| ||| |||| |||| || | |||| ||||| |||
Sbjct 603 TCGTCCACTTGAATTGCTGCTTGA-AAATGTGGCAAAAGAGCAGAAGAAAAACCCTACGA 661
Query 517 AACCCCCCTTGACCTTAGGTATGAAGAAAGACTTGGACGATATCAACAAGAAGATCTTTA 576
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 662 AACCCCCCTTGACCTTAGGTATGAAGAAAGACTTGGACGATATCAACAAGAAGATCTTTA 721
Query 577 ACTTGATGTGTCAAGTCCCCTTGTTGCCCAACAAGCGTAAAAATGCCAAAGGATTAGATG 636
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 722 ACTTGATGTGTCAAGTCCCCTTGTTGCCCAACAAGCGTAAAAAAGCCAAAGGATTGGATG 781
Query 637 CTGACGACGGTGA-GGGG--GATAATAACGGCAAAGGAATTGTTTGCCTTCCCGGGATCC 693
|||||| || || |||| |||||||||||||||||||||||||||| ||||||||||
Sbjct 782 ATGACGATGGCGACGGGGATAATAATAACGGCAAAGGAATTGTTTGCCTGCCCGGGATCC 841
Query 694 ATGCTAATAAAGAAGATCTTAAAAGACGCGCGGTTTTCAGATATGTACTAGGCGAATTCG 753
|||| ||||||| |||||||| ||| |||||||||||||||||||| ||| |||||||||
Sbjct 842 ATGCAAATAAAGCAGATCTTAGAAGTCGCGCGGTTTTCAGATATGTGCTACGCGAATTCG 901
Query 754 AGGAACTCAGTGATCAACAGAAGTTCTGCCTGCTGAGCTTTGCTGTCTTCCCTGAAAATC 813
||||||| |||||||||| |||| |||||||||||| ||| |||||||||||||||||||
Sbjct 902 AGGAACTTAGTGATCAACGGAAGATCTGCCTGCTGACCTTCGCTGTCTTCCCTGAAAATC 961
Query 814 AAGAGGTGAATAGAACGATGCTGATGTATTGGTGGATGGGGGAGGGCATTCTGAGTTCTC 873
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 962 AAGAGGTGAATAGAACGATGCTGATGTATTGGTGGATGGGGGAGGGCATTCTGAGTACTA 1021
Query 874 AAGACATACCATC-C--GA----A---AAG-GG-CATTCTCAAACCCGAAGATGTTGTGA 921
|||||||| |||| | || | ||| || ||||||||||||||||||||||||||
Sbjct 1022 AAGACATATCATCACAAGAGGGCACTGAAGAGGTCATTCTCAAACCCGAAGATGTTGTGA 1081
Query 922 AGGACATTCTTGATGATTTCAAGGATAGAAACTTGATTGAACCTGTTGAAATCAAACGCA 981
||| ||||||| | ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1082 AGGTCATTCTTAAGGATTTCACGGATAGAAACTTGATTGAACCTGTTGAAATCAAACGCA 1141
Query 982 AAG-AGAAGCCAAATAGCTATAAGATGGCCCCTTTTGTGCATTCTTCAGTGGTTCTTATC 1040
||| | |||||| |||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct 1142 AAGTCG-AGCCAAGTAGCTATAAGATGGCCCCCTTTGTGCATGCTTCAGTGGTTCTTATC 1200
Query 1041 TCCAAGGAGATAGGGCTATTTGATATGTATGATAAAAAAGAGAAGCCAACCATGAA-ACA 1099
||||||||||||||||| |||||||||||||||| ||| || |||||| |||||| | |
Sbjct 1201 TCCAAGGAGATAGGGCTTTTTGATATGTATGATATAAAGGACAAGCCAGTCATGAAGA-A 1259
Query 1100 ATCAGGACTGCACAAGGTATGCCTTGTGGAAGGGTCGTCAAGCCAGCAAGAAGCAAAAGC 1159
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1260 ATCAGGAATGCACAAGGTATGCCTTGTGGAAGGGTCGTCAAGCCAGCAAGAAGCAAAAGC 1319
Query 1160 TaaaaaaaTGGCAGATGTAGATCAGATTGAAACCGTGTTCAATGTTTCTGAGAGGTTTCC 1219
||||||||||| |||||||||||| |||||||| |||||||||||||| |||||||||||
Sbjct 1320 TAAAAAAATGGAAGATGTAGATCATATTGAAACTGTGTTCAATGTTTCGGAGAGGTTTCC 1379
Query 1220 GGATTTCACATTCAAGTGGTTTTTC-GAGGATAAACCAACACGAAATAAGCTGACTCTAT 1278
||||||||||||||||||| || || |||||||||||||| ||||||||| ||||||| |
Sbjct 1380 GGATTTCACATTCAAGTGG-TTCTCGGAGGATAAACCAACGCGAAATAAGTTGACTCTGT 1438
Query 1279 CAAAAGCTACGTATCCAAAGCTCAAGGTTTTCTATCTGGGAAGATGGGAGAGAACTGCTA 1338
|||||| |||||||| |||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 1439 CAAAAGTTACGTATCAAAAGCTCAAGGTGTTCTATCTGGGAAGATGGGAGAGAACTGCCA 1498
Query 1339 AGCGCCACATCGAGGTGGAGAATCCAGAGCTTATGAAAAACTTGAAGCATATGATTAAAC 1398
||||||||||||||||||||||||| |||||||||||||| ||||||| |||||||||||
Sbjct 1499 AGCGCCACATCGAGGTGGAGAATCCTGAGCTTATGAAAAATTTGAAGCGTATGATTAAAC 1558
Query 1399 TCAAGCTTCTGAGTTTTCAAGGGATCTCAAGAATTGAAAGACTTGACAATGCTGTCTGTA 1458
|||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |
Sbjct 1559 TCAAGCTTCTGAGTTTTCAAGGGATCTCAAGAATTGAACGACTTGACGATGCTGTCTGCA 1618
Query 1459 AGCTTCGTGAGCTGATCATCTTGGACCTCAGAGCTTGCTATAATCTTGAGAAACTTCCAG 1518
|||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1619 AGCTTCGTGACCTGATCATCTTGGACCTCAGAGCTTGCTATAATCTGGAGAAACTTCCAG 1678
Query 1519 ACAAGATAGATTCACTCAAGGCGCTTATCTACTTGGACATTACAGATTGCTACATGATAG 1578
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1679 ACAAGATAGATTCACTCAAGGCGCTTATCTACTTGGACATTACAGATTGCTACATGATAG 1738
Query 1579 ATCGCATGCCCAAGAGGTTGTCGTGGCTGGATAACTTGGAGGTTCTCAAGGGCTTTGTGG 1638
|||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||| |
Sbjct 1739 ATCGCATGCCCAAGAGGTTGTCATGGCTTGATAACTTAGAGGTTCTCAAGGGCTTTGTTG 1798
Query 1639 TCAGTGATGCTATTGATGATGAGACTGTCTGCACACTGGCTGAGTTGGTGGAGTTGAAGA 1698
|||||||||||| ||||| ||||| |||||||||||||||||||||||| | |||||||
Sbjct 1799 TCAGTGATGCTACAGATGAAGAGACGGTCTGCACACTGGCTGAGTTGGTGCACTTGAAGA 1858
Query 1699 AGCTGAGAAAGCTAAGTATTTCAATAAACAAAGAAGATTTCAGCATAGTTGATGTGTTCG 1758
||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct 1859 AGCTGAGAAAGCTAAGTATTTCAATAAACAAAGAAAATTTCAGCATAGATGATGTGTTCG 1918
Query 1759 TGGCTGTAAAGAATTTCAAAAAACTGGAAAAGTTGAAAGTGGCGTGGGGAGGTATAAATA 1818
|||||||||||| |||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 1919 TGGCTGTAAAGAGTTTCAAAAAACTGGAAAAGTTGAAGGTTGCGTGGGGAGGTATAAATA 1978
Query 1819 AACATCCTCAGGACAAAGGCGTAGATGGAGAAAAGGGGGTCGGAAAGGTTAAGCCAAAGG 1878
||||||||||| ||||||||||||| | |||||||||| || ||| |||||||||||||
Sbjct 1979 CACATCCTCAGGGCAAAGGCGTAGATAGCGAAAAGGGGGACGAAAATGTTAAGCCAAAGG 2038
Query 1879 AG 1880
||
Sbjct 2039 AG 2040
Score = 590 bits (319), Expect = 2e-167
Identities = 374/401 (93%), Gaps = 2/401 (0%)
Strand=Plus/Plus
Query 1928 GATCTTGGAAAGAGCGGCGACCATGTTCCGTAAGGAGAAAGGTCCCAAAGAGCCAGAGCT 1987
|||||||||||| || || |||||||||||||||||||||| ||||| || |||||||||
Sbjct 2049 GATCTTGGAAAGGGCTGCAACCATGTTCCGTAAGGAGAAAGATCCCACAGCGCCAGAGCT 2108
Query 1988 TCCGGAGACATTGAAGAAACTGGACCTGCAGTGTTTTCCTGGTGAACTTCTTCCTGAATG 2047
||| ||||||||||||||||||||||||| |||||||||||||||| ||||||||||||
Sbjct 2109 TCCAAAGACATTGAAGAAACTGGACCTGCAATGTTTTCCTGGTGAACATCTTCCTGAATG 2168
Query 2048 GCTTGAGCCTAATAATCTACGTAATGTGGAAAAACTCTACATTAAAGGAGGAACCGAACT 2107
|||||||||| ||||||||| |||||||||||||||||||||||||||||||| | ||||
Sbjct 2169 GCTTGAGCCTGATAATCTACTTAATGTGGAAAAACTCTACATTAAAGGAGGAATCAAACT 2228
Query 2108 TACTGGATTTGGAAAGTCACTACCTATCGAGGAA-ACGCACTGCAAAGTTACCGTTTTAC 2166
|||||||||||||||||||||||||| | | ||| || | |||||||||||||||||||
Sbjct 2229 TACTGGATTTGGAAAGTCACTACCTAGCCA-GAATTCGAAATGCAAAGTTACCGTTTTAC 2287
Query 2167 GACTGAAGTTTCTTCCAAAACTAAAAGTGGAGTGGAGGGATCTGAGCAAAAGGTACTTTC 2226
| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2288 GTCTGAAGTTTCTTCCAAAACTAAAAGTGGAGTGGAGGGATTTGAGCAAAAGGTACTTTC 2347
Query 2227 CAAAACTGAAGTTCTTGGAGAAGTATCAGTGCCCTCAAGTTAGTCTCTGCCCCTGCGATG 2286
| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2348 CGGAACTCAAGTTCTTGGAGAAGTATCAGTGCCCTCAAGTTAGTCTCTGCCCCTGCGATG 2407
Query 2287 GAATTGGAATCTGGCGCAAGCCTGAAGAAAATGAAGTCTAA 2327
||||||||||||||||||||||||||||| |||||||||||
Sbjct 2408 GAATTGGAATCTGGCGCAAGCCTGAAGAAGATGAAGTCTAA 2448
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 115511454045
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5