BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494438
Length=1061
Score E
Sequences producing significant alignments: (Bits) Value
AT5G45440.1 | Symbols: | P-loop containing nucleoside triphosp... 695 0.0
AT5G45490.1 | Symbols: | P-loop containing nucleoside triphosp... 464 7e-130
> AT5G45440.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr5:18412308-18413555
REVERSE LENGTH=1248
Length=1248
Score = 695 bits (376), Expect = 0.0
Identities = 459/499 (92%), Gaps = 6/499 (1%)
Strand=Plus/Plus
Query 1 ttttttttGTTCCAACTTTTGCTTGGAAATGACTCAAGAAGATTCATCGCGTGGATTAAC 60
|||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 62 TTTTTTTTGTTCCAGCTTTTGCTTGGAAATGACTCAAGAAGATTCATCGCGCGGATTAAC 121
Query 61 AAGTGTAGGCAGAAACGACTTCACACATCGGTTCGCTGATAGATACAAGGAATGGTTAAG 120
||||||||||||| ||||||||| |||||||||||||||||||||| |||||| || |
Sbjct 122 AAGTGTAGGCAGAGTTGACTTCACAAATCGGTTCGCTGATAGATACAACGAATGGCTAGG 181
Query 121 GACAACTGGTGAAGAAACAAAACAGGAGGAGGATCGTGTGGAAACTAATTCTGAACTTCC 180
|||||||||||| ||||||||||||| ||||||||||||||||||| |||||| ||||||
Sbjct 182 GACAACTGGTGACGAAACAAAACAGGTGGAGGATCGTGTGGAAACTGATTCTGGACTTCC 241
Query 181 -GGCTTATGAAATCTATGGTTTCGAGAATGAGATCAAATCATTGCAACACTTCTTGTTGG 239
|| | |||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 242 AGG-TCATGATATCTATGGTTTCGAGAATGAGATCAAATCATTGCAACACTTCTTGTTGG 300
Query 240 ATCAAAAGGT-TTACAAGGAGTTCAAGAGTCTTGTGATTGTCGGAGAACACGGTGTTGGG 298
|||||||| | ||||||| |||||||||||||||| ||||||||||| |||||||||||
Sbjct 301 ATCAAAAG-TCTTACAAGCTGTTCAAGAGTCTTGTGGTTGTCGGAGAATACGGTGTTGGG 359
Query 299 AAGACAGCATTATGCCAGAAGATCTTCAATGATTATGATGTTAAGAGTGTTTATGCCCC- 357
|||||||||||||||||| |||||||||||||||||||||| | || || |||||||||
Sbjct 360 AAGACAGCATTATGCCAGCAGATCTTCAATGATTATGATGTGAGGAATGCTTATGCCCCG 419
Query 358 ATGGATTTGGGTTTCCATGCTTAGCAATGAATCTAAGGAGGGACTTGATGGGAAAATATG 417
| |||||||||| || |||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 420 A-GGATTTGGGTATCTATGCATAGCAATGAATCTAAGGAGGGACTTGATGGGAAGATATG 478
Query 418 TGTGTTGAAGAAGATCTTGAAGGCTCTCGGAGTTGAAGATTCGATGTTCGAATCCATCCG 477
||||||||||| ||||||||||| ||| ||||||||||| || ||||||||||||||||
Sbjct 479 TGTGTTGAAGACGATCTTGAAGGGTCTTGGAGTTGAAGAGTCAATGTTCGAATCCATCCA 538
Query 478 TAGAGAAGTAGTAGAAGAA 496
|||||||||||||||||||
Sbjct 539 TAGAGAAGTAGTAGAAGAA 557
Score = 579 bits (313), Expect = 2e-164
Identities = 492/573 (86%), Gaps = 33/573 (6%)
Strand=Plus/Plus
Query 493 AGAAACAGCGAAAGAGAAGGAGCTCTCTGCTCTGCTCTATGCACTTCACTTGAATCTGAG 552
||| || || |||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 593 AGAGACGGCTAAAGAGAAGGAGATCTCTGCTCTGCTCTATGCACTTCACTTGAATCTGAG 652
Query 553 GTGGAAGAAGTA-CATGATTGTGTTTGATGATGTGCGAGAAGA-GGATAATTGGAACGAG 610
|||||||||||| | ||||||||||||||||||| | || ||| ||||| ||| |||||
Sbjct 653 GTGGAAGAAGTATC-TGATTGTGTTTGATGATGT-CCAGGAGATCGATAACTGGGACGAG 710
Query 611 ATGCTTC-A-G-G--A--CGGTGA-GGAGAAGCAATGGGGAAAGTATCTTTCAGATGGAT 662
| | || | | | | | || || ||| |||||||||||||||||||||||||||
Sbjct 711 AAAC-TCGATGCGAAACTCAACGAGGGTGAA-AAATGGGGAAAGTATCTTTCAGATGGAT 768
Query 663 TCCCTACAGGATCTGGTGGGAGAGTCATATACACGACCAGAGATGAGAATCTAGCGAAGA 722
|||||| ||| ||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 769 TCCCTAAAGGGTCTGGTGGGAGGGTCATATACACGACCAGAGATGAGAATCTGGCGAAGA 828
Query 723 A-ATTAGTTGCAGAGAAACATGAGATTCATTGTCTTTGGCCGCTGTCTGATTCTTACAGT 781
| || |||| ||||||||||||| ||| ||||||||||||| ||||||||| |||||
Sbjct 829 ACCTT-GTTGTTCAGAAACATGAGATCCATCGTCTTTGGCCGCTATCTGATTCTAACAGT 887
Query 782 GTTTGGAAGATATACGAAGCAATTATCTTA-AAGAGAGAGAAAGAGCCTCCAAGGAACGA 840
|||||||||||||| |||||||| ||| | ||||||||||||||| |||||||||||||
Sbjct 888 GTTTGGAAGATATATGAAGCAATGATC-CAGAAGAGAGAGAAAGAGTCTCCAAGGAACGA 946
Query 841 CAAGAAATGTATAGATGAGCTGATGAACAAGTCTCGTGGTCTTCCTCTGGCTGCTAGACT 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 947 CAAGAAATGTATAGATGAGCTGATGAACAAGTCTCGTGGTCTTCCTCTGGCTGCTAGACT 1006
Query 901 GCTGGCTAAACTTGATCCTGTGTTGCTTGAAAATGAAAAAGCTGACCAGAACGGTTCTAA 960
| ||||| | |||||||| ||||| |||| ||| ||| ||| ||||||||||||||||
Sbjct 1007 GTTGGCTGAGCTTGATCCCATGTTGTTTGACGATGGAAAGGCTAACCAGAACGGTTCTAA 1066
Query 961 C--T--A----C----TCAGTCAACAACCCCACTTCAGAAGAGAATAAAACTACTCAACC 1008
| | | |||||| ||||||||| ||||||||||| |||||||| ||||
Sbjct 1067 AGATGGAAAAACCGACTCAGTCGACAACCCCAATTCAGAAGAGAGTAAAACTA---AACC 1123
Query 1009 TCTGTAGACTTTAGAAGATTGCAGAGCCCTTTT 1041
||||||||||||||||||||| |||||||||||
Sbjct 1124 TCTGTAGACTTTAGAAGATTGAAGAGCCCTTTT 1156
> AT5G45490.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr5:18431003-18432397
FORWARD LENGTH=1395
Length=1395
Score = 464 bits (251), Expect = 7e-130
Identities = 401/471 (85%), Gaps = 20/471 (4%)
Strand=Plus/Plus
Query 480 GAGAAGTAG-TAGAAGAAACAGCGAAAGAGAAGGAGCTCTCTGCTCTGCTCTATGCACTT 538
||||| | | ||| ||| || | |||||||||||||||||||||||||||||||||||||
Sbjct 588 GAGAAATTGATAG-AGAGACGGAGAAAGAGAAGGAGCTCTCTGCTCTGCTCTATGCACTT 646
Query 539 CACTTGAATCTGAGGTGGAAGAAGTA-CATGATTGTGTTTGATGATGTGCGAGAAGAGGA 597
||||||||||||||||||||||| || | ||||||||||||||||||| || ||| | ||
Sbjct 647 CACTTGAATCTGAGGTGGAAGAAATATC-TGATTGTGTTTGATGATGTTCGGGAAAACGA 705
Query 598 TAATTGGAACGAGATGCTTCA-G-GACGGT-GAGGA-GA--AGCAATGGGGAAAGTATCT 651
||| ||| |||| | |||| | | || | |||| || || ||||||||||||||||
Sbjct 706 TAACTGGGACGAAAAGCTTGATGCGAAACTCAAGGAGGATGAGAAATGGGGAAAGTATCT 765
Query 652 TTCAGATGGATTCCCTACAGGATCTGGTGGGAGAGTCATATACACGACCAGAGATGAGAA 711
||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 766 TTCAGATGGATTCCCTAAAGGGTCTGGTGGGAGAGTCATATACACGACCAGAGATGAGAA 825
Query 712 TCTAGCGAAGAAA-TTAGTTGCAGAGAAACATGAGATTCATTGTCTTTGGCCGCTGTCTG 770
||| |||||||| || ||||| ||||||||||||| ||| ||||||||||||||||||
Sbjct 826 TCTGGCGAAGAACCTT-GTTGCTCAGAAACATGAGATCCATCGTCTTTGGCCGCTGTCTG 884
Query 771 ATTCTT-ACAGTGTTTGGAAGATATACGAAGCAATTATCTTAAAGAGAGA--GAAAGAGC 827
|| | | | ||||| ||||||||||| || ||| | | | ||||| | | |||||||
Sbjct 885 AT-CATCAGAGTGTCTGGAAGATATATGATGCAGTGGT-T-AAAGATAAACAGAAAGAGT 941
Query 828 CTCCAAGGAACGACAAGAAATGTATAGATGAGCTGATGAACAAGTCTCGTGGTCTTCCTC 887
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 942 CACCAAGGAACGACAAGAAATGTATAGATGAGCTGATGAATAAGTCTCGTGGTCTTCCTC 1001
Query 888 TGGCTGCTAGACTGCTGGCTAAACTTGATCCTGTGTT-GCTTGAAAATGAA 937
||||||| |||||| ||||| | | |||||| || || | |||| |||||
Sbjct 1002 TGGCTGCCAGACTGTTGGCTGAGCGTGATCCCGTCTTTG-TTGACGATGAA 1051
Score = 342 bits (185), Expect = 3e-93
Identities = 256/290 (88%), Gaps = 6/290 (2%)
Strand=Plus/Plus
Query 170 TCTGAACTTCC-GGCTTATGAAATCTATGGTTTCGAGAATGAGATCAAATCATTGCAACA 228
||| ||||||| ||| |||| ||| | |||||||| || |||||||| |||||||||||
Sbjct 221 TCTAAACTTCCGGGC-CATGACATCCACGGTTTCGATAACGAGATCAAGTCATTGCAACA 279
Query 229 CTTCTTGTTGGATCAAAAGGTTTA-CAAGGAGTTCAAGAGTCTTGTGATTGTCGGAGAAC 287
||||||||||||||| |||| ||| | |||||||||||||||||||||||||||||||
Sbjct 280 CTTCTTGTTGGATCAGAAGG-TTAGGAGGGAGTTCAAGAGTCTTGTGATTGTCGGAGAAT 338
Query 288 ACGGTGTTGGGAAGACAGCATTATGCCAGAAGATCTTCAATGATTATGATGTTAAGAGTG 347
| |||||||||||||||||||||||||||||||||||||||||| | | ||| |||||||
Sbjct 339 ATGGTGTTGGGAAGACAGCATTATGCCAGAAGATCTTCAATGATGAAGCTGTGAAGAGTG 398
Query 348 TTTATGC-CCCATGGATTTGGGTTTCCATGCTTAGCAATGAATCTAAGGAGGGACTTGAT 406
||||||| |||| || ||||||| || ||| | ||| |||||||||||||||||||||
Sbjct 399 TTTATGCTCCCAGGG-TTTGGGTGTCTATGGAAAACAAAGAATCTAAGGAGGGACTTGAT 457
Query 407 GGGAAAATATGTGTGTTGAAGAAGATCTTGAAGGCTCTCGGAGTTGAAGA 456
||||| |||||||||||||||||||||||||||| ||| |||||||||||
Sbjct 458 GGGAAGATATGTGTGTTGAAGAAGATCTTGAAGGGTCTTGGAGTTGAAGA 507
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51957564075
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5